RLG00000031974

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012588
Physical Location & Seq
Reverse (-)
9934727 .. 9936507
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031974

Sequence Viewer

Length: 924 bp
ATGGGTGTTAGCTCTCTTCGGCATTCTGCATTATTTTTCCTGTTTCTCTTCTTTAGTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCTGCAGTGTCTGCTACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAACGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACTCCCATCACAACCCCGACGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACCACAACCCCGACGACTCCCAGTACAACCCCAACAACTCCCTATACAACTCCAACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAGCTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGACCCAAGTAGTGGTAGCTGTCGCTATCCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACCAGACTCCACCATCGACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

308

Amino Acids

31.55

Weight (kDa)

5.67

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 145 - 215 5.8e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 671
AciI CCGC 3 cut(s) 308, 326, 785
AclWI GGATC 2 cut(s) 576, 814
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 361, 718
AfiI CCNNNNNNNGG 1 cut(s) 671
AgsI TTSAA 3 cut(s) 66, 530, 589
AjnI CCWGG 1 cut(s) 799
AlwI GGATC 2 cut(s) 576, 814
AlwNI CAGNNNCTG 2 cut(s) 158, 467
Ama87I CYCGRG 1 cut(s) 712
ApeKI GCWGC 2 cut(s) 845, 908
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 513
AvaI CYCGRG 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 857, 920
BccI CCATC 5 cut(s) 284, 697, 748, 778, 835
BciT130I CCWGG 1 cut(s) 801
BcnI CCSGG 1 cut(s) 566
BfmI CTRYAG 3 cut(s) 150, 473, 625
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 2 cut(s) 846, 909
BlsI GCNGC 2 cut(s) 847, 910
Bme1390I CCNGG 2 cut(s) 566, 801
BmeT110I CYCGRG 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 566, 801
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 242, 422, 710
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 566
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 801
BseGI GGATG 3 cut(s) 233, 692, 770
BseLI CCNNNNNNNGG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 857, 920
BseYI CCCAGC 3 cut(s) 165, 229, 610
BsgI GTGCAG 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 712
Bsp143I GATC 2 cut(s) 568, 806
BspACI CCGC 3 cut(s) 308, 326, 785
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 154, 477
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 2 cut(s) 576, 814
BsrI ACTGG 1 cut(s) 357
BssMI GATC 2 cut(s) 568, 806
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 2 cut(s) 205, 518
Bst6I CTCTTC 2 cut(s) 21, 53
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 448, 869
BstF5I GGATG 3 cut(s) 233, 692, 770
BstKTI GATC 2 cut(s) 571, 809
BstMBI GATC 2 cut(s) 568, 806
BstMWI GCNNNNNNNGC 2 cut(s) 158, 581
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 564, 799
BstSFI CTRYAG 3 cut(s) 150, 473, 625
BstV1I GCAGC 2 cut(s) 857, 920
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 233, 692, 770
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 657
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 448, 869
CaiI CAGNNNCTG 2 cut(s) 158, 467
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 2 cut(s) 360, 717
CviAII CATG 3 cut(s) 125, 256, 868
CviQI GTAC 2 cut(s) 360, 717
DpnI GATC 2 cut(s) 570, 808
DpnII GATC 2 cut(s) 568, 806
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 799
FaeI CATG 3 cut(s) 128, 259, 871
FaqI GGGAC 1 cut(s) 820
FatI CATG 3 cut(s) 124, 255, 867
FauI CCCGC 3 cut(s) 315, 333, 792
Fnu4HI GCNGC 2 cut(s) 846, 909
FokI GGATG 3 cut(s) 220, 679, 757
Fsp4HI GCNGC 2 cut(s) 846, 909
GluI GCNGC 2 cut(s) 846, 909
GsaI CCCAGC 3 cut(s) 169, 233, 614
GsuI CTGGAG 1 cut(s) 783
HapII CCGG 1 cut(s) 565
Hin1II CATG 3 cut(s) 128, 259, 871
HpaII CCGG 1 cut(s) 565
HphI GGTGA 1 cut(s) 513
Hpy166II GTNNAC 3 cut(s) 521, 719, 882
Hpy188I TCNGA 3 cut(s) 463, 832, 923
Hpy188III TCNNGA 2 cut(s) 125, 485
Hpy8I GTNNAC 3 cut(s) 521, 719, 882
Hpy99I CGWCG 2 cut(s) 292, 352
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 2 cut(s) 205, 518
HpyCH4V TGCA 7 cut(s) 29, 152, 413, 475, 512, 867, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 581
Hsp92II CATG 3 cut(s) 128, 259, 871
Kzo9I GATC 2 cut(s) 568, 806
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 857, 920
LweI GCATC 3 cut(s) 242, 422, 710
MaeIII GTNAC 2 cut(s) 205, 897
MalI GATC 2 cut(s) 570, 808
MboI GATC 2 cut(s) 568, 806
MboII GAAGA 4 cut(s) 8, 40, 217, 616
MluCI AATT 3 cut(s) 525, 813, 912
MlyI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 727, 842
MmeI TCCRAC 4 cut(s) 124, 224, 413, 641
MnlI CCTC 4 cut(s) 93, 409, 500, 629
MspA1I CMGCKG 1 cut(s) 624
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 2 cut(s) 566, 801
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 2 cut(s) 158, 581
NciI CCSGG 1 cut(s) 566
NdeII GATC 2 cut(s) 568, 806
NlaIII CATG 3 cut(s) 128, 259, 871
NmuCI GTSAC 1 cut(s) 897
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 712
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 121, 173, 178
PflMI CCANNNNNTGG 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 2 cut(s) 847, 910
PleI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 727, 841
PpsI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 727, 841
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 799
PspFI CCCAGC 3 cut(s) 165, 229, 610
PspGI CCWGG 1 cut(s) 799
PspXI VCTCGAGB 1 cut(s) 712
PstI CTGCAG 2 cut(s) 154, 477
PstNI CAGNNNCTG 2 cut(s) 158, 467
PvuII CAGCTG 1 cut(s) 624
RsaI GTAC 2 cut(s) 361, 718
RsaNI GTAC 2 cut(s) 360, 717
SatI GCNGC 2 cut(s) 846, 909
Sau3AI GATC 2 cut(s) 568, 806
SbfI CCTGCAGG 1 cut(s) 477
SchI GAGTC 7 cut(s) 205, 286, 307, 325, 346, 727, 842
ScrFI CCNGG 2 cut(s) 566, 801
SdaI CCTGCAGG 1 cut(s) 477
SfaNI GCATC 3 cut(s) 242, 422, 710
SfcI CTRYAG 3 cut(s) 150, 473, 625
Sfr274I CTCGAG 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
SphI GCATGC 1 cut(s) 871
Sse8387I CCTGCAGG 1 cut(s) 477
Sse9I AATT 3 cut(s) 525, 813, 912
SsiI CCGC 3 cut(s) 308, 326, 785
StyD4I CCNGG 2 cut(s) 564, 799
TaaI ACNGT 2 cut(s) 205, 518
TaqI TCGA 3 cut(s) 176, 713, 743
TasI AATT 3 cut(s) 525, 813, 912
TatI WGTACW 2 cut(s) 359, 716
TfiI GAWTC 3 cut(s) 121, 173, 178
TscAI CASTG 2 cut(s) 159, 664
TseFI GTSAC 1 cut(s) 897
TseI GCWGC 2 cut(s) 845, 908
Tsp45I GTSAC 1 cut(s) 897
TspDTI ATGAA 2 cut(s) 113, 141
TspRI CASTG 2 cut(s) 159, 664
Van91I CCANNNNNTGG 1 cut(s) 671
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XhoI CTCGAG 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.