RchiOBHm_Chr5g0012981

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012588
Physical Location & Seq
Reverse (-)
8807332 .. 8809779
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29353

Sequence Viewer

Length: 648 bp
ATGACAACCCCCACCACTCCCACCACAACCCCAACGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCACTACAACCCCGACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACAGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTACTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGATCCAAGTAGTGGTAGCTGTCGCTATTCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACCAGACTCCACCATCAACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

215

Amino Acids

21.72

Weight (kDa)

4.32

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 53 - 123 6.1e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 395
AciI CCGC 3 cut(s) 53, 71, 509
AclWI GGATC 3 cut(s) 300, 380, 538
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 254, 313
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 7 cut(s) 182, 206, 267, 338, 348, 402, 435
AluI AGCT 7 cut(s) 182, 206, 267, 338, 348, 402, 435
AlwI GGATC 3 cut(s) 300, 380, 538
Ama87I CYCGRG 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 569, 632
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 436
BbvI GCAGC 2 cut(s) 581, 644
BccI CCATC 3 cut(s) 472, 502, 559
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 197, 349
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 2 cut(s) 570, 633
BlsI GCNGC 2 cut(s) 571, 634
Bme1390I CCNGG 2 cut(s) 290, 525
BmeT110I CYCGRG 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 290, 525
BmsI GCATC 2 cut(s) 146, 434
BpmI CTGGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 525
BseGI GGATG 2 cut(s) 416, 494
BseLI CCNNNNNNNGG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 581, 644
BseYI CCCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 436
Bsp143I GATC 3 cut(s) 292, 385, 530
BspACI CCGC 3 cut(s) 53, 71, 509
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 3 cut(s) 300, 380, 538
BssMI GATC 3 cut(s) 292, 385, 530
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 172, 593
BstF5I GGATG 2 cut(s) 416, 494
BstKTI GATC 3 cut(s) 295, 388, 533
BstMBI GATC 3 cut(s) 292, 385, 530
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 288, 523
BstSFI CTRYAG 2 cut(s) 197, 349
BstV1I GCAGC 2 cut(s) 581, 644
BstXI CCANNNNNNTGG 1 cut(s) 616
BtsCI GGATG 2 cut(s) 416, 494
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 172, 593
Csp6I GTAC 1 cut(s) 441
CviAII CATG 1 cut(s) 592
CviQI GTAC 1 cut(s) 441
DpnI GATC 3 cut(s) 294, 387, 532
DpnII GATC 3 cut(s) 292, 385, 530
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 523
FaeI CATG 1 cut(s) 595
FaiI YATR 9 cut(s) 167, 216, 228, 273, 306, 482, 515, 543, 593
FaqI GGGAC 1 cut(s) 544
FatI CATG 1 cut(s) 591
FauI CCCGC 3 cut(s) 60, 78, 516
Fnu4HI GCNGC 2 cut(s) 570, 633
FokI GGATG 2 cut(s) 403, 481
Fsp4HI GCNGC 2 cut(s) 570, 633
GluI GCNGC 2 cut(s) 570, 633
GsaI CCCAGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 507
HapII CCGG 1 cut(s) 289
Hin1II CATG 1 cut(s) 595
HinfI GANTC 6 cut(s) 37, 58, 76, 97, 457, 557
HpaII CCGG 1 cut(s) 289
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 3 cut(s) 245, 443, 606
Hpy188I TCNGA 3 cut(s) 187, 556, 647
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 3 cut(s) 245, 443, 606
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 5 cut(s) 137, 199, 236, 591, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 595
Kzo9I GATC 3 cut(s) 292, 385, 530
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 2 cut(s) 581, 644
LweI GCATC 2 cut(s) 146, 434
MaeIII GTNAC 1 cut(s) 621
MalI GATC 3 cut(s) 294, 387, 532
MboI GATC 3 cut(s) 292, 385, 530
MboII GAAGA 1 cut(s) 340
MluCI AATT 3 cut(s) 249, 537, 636
MlyI GAGTC 6 cut(s) 31, 52, 70, 91, 451, 566
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 3 cut(s) 133, 224, 353
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 290, 525
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 290
NdeII GATC 3 cut(s) 292, 385, 530
NlaIII CATG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 621
NspI RCATGY 1 cut(s) 595
PaeI GCATGC 1 cut(s) 595
PaeR7I CTCGAG 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 395
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 2 cut(s) 571, 634
PleI GAGTC 6 cut(s) 31, 52, 70, 91, 451, 565
PpsI GAGTC 6 cut(s) 31, 52, 70, 91, 451, 565
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 523
PspXI VCTCGAGB 1 cut(s) 436
PstI CTGCAG 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 348
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SatI GCNGC 2 cut(s) 570, 633
Sau3AI GATC 3 cut(s) 292, 385, 530
SbfI CCTGCAGG 1 cut(s) 201
SchI GAGTC 6 cut(s) 31, 52, 70, 91, 451, 566
ScrFI CCNGG 2 cut(s) 290, 525
SdaI CCTGCAGG 1 cut(s) 201
SfaNI GCATC 2 cut(s) 146, 434
SfcI CTRYAG 2 cut(s) 197, 349
Sfr274I CTCGAG 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SphI GCATGC 1 cut(s) 595
Sse8387I CCTGCAGG 1 cut(s) 201
Sse9I AATT 3 cut(s) 249, 537, 636
SsiI CCGC 3 cut(s) 53, 71, 509
StyD4I CCNGG 2 cut(s) 288, 523
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 437
TasI AATT 3 cut(s) 249, 537, 636
TatI WGTACW 1 cut(s) 440
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 2 cut(s) 569, 632
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 395
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XhoI CTCGAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.