Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010837.1

Orthogroup ID

OG0012588

Physical Location & Seq

Genomic Coordinates Forward (+)

81 .. 1222

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgactcccacacttgtcttcccagcatccccaccaccaccaaccaccatgacaacccccaccacaaccccgatgactcccactacaatcccgccgactccccctatcccgccgactcccactacaaccccgacgactcccactacaaccccgacgactcccactacaactccaacgactcccttcacaactccctccacaacccctgcatcatcaggtggtagtggtagttggtgtatagcaagccaatcagcttcagaaactgccctgcaggtagctcttgattatgcttgtggctatggaggtgcagactgttcaccaattcaaccaagtggaagctgttataacccaaacactctccgggatcacgcttcctatgccttcaataactattaccagaagaacccagctccaaccagctgtagttttggaggaacagcacaactgaccaccactgacccaagtagtggtagctgtcgctattcatcatccacagcatcaaccagctcgagtacaccaccttaccagactccaccatcgacgccgacaagtatgacaacgccaccatccccgaccaccccgcttatagatactccaggtggatcaacaatttatggttcgccatcagagtcccccaacgcagccaactctatctcatcttgcatgcttctgctgtccaccacactcttgggttcactacttgcagcaatttacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

239

Amino Acids

24.24

Weight (kDa)

4.32

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06330 FvH4_3g06330 FvH4_3g06330 FvH4_3g06330
malus_domestica	MD05G1291200.v1.1 MD10G1266900.v1.1
prunus_persica	Prupe.4G074400_v2.0.a1
pyrus_communis	pycom05g26770 pycom10g22310
rosa_chinensis	RchiOBHm_Chr5g0012981
rosa_laevigata	RLG00000031974
rosa_multiflora	Rmu_sc0005409.1_g000019 Rmu_sc0010837.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063600
rosa_rugosa	Rorug05G0005700
rosa_samantha	Rh5AG100100 Rh5BG096800 Rh5DG095700
rosa_wichuraiana	Rw5G008750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	3 cut(s)	92, 110, 581
AclWI	GGATC	2 cut(s)	372, 610
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	326, 385
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	254, 278, 339, 410, 420, 474, 507
AluI	AGCT	7 cut(s)	254, 278, 339, 410, 420, 474, 507
AlwI	GGATC	2 cut(s)	372, 610
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	641, 704
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	653, 716
BccI	CCATC	3 cut(s)	544, 574, 631
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	362
BfmI	CTRYAG	2 cut(s)	269, 421
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	642, 705
BlsI	GCNGC	2 cut(s)	643, 706
Bme1390I	CCNGG	2 cut(s)	362, 597
BmeT110I	CYCGRG	1 cut(s)	508
BmrFI	CCNGG	2 cut(s)	362, 597
BmsI	GCATC	3 cut(s)	35, 218, 506
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	26, 488, 566
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	653, 716
BseYI	CCCAGC	2 cut(s)	22, 406
BsgI	GTGCAG	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	616
BsoBI	CYCGRG	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	364, 602
BspACI	CCGC	3 cut(s)	92, 110, 581
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	372, 610
BssMI	GATC	2 cut(s)	364, 602
BssNI	GRCGYC	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	244, 665
BstF5I	GGATG	3 cut(s)	26, 488, 566
BstKTI	GATC	2 cut(s)	367, 605
BstMBI	GATC	2 cut(s)	364, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	360, 595
BstSFI	CTRYAG	2 cut(s)	269, 421
BstV1I	GCAGC	2 cut(s)	653, 716
BstV2I	GAAGAC	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	26, 488, 566
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	244, 665
CaiI	CAGNNNCTG	1 cut(s)	263
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	2 cut(s)	49, 664
CviQI	GTAC	1 cut(s)	513
DpnI	GATC	2 cut(s)	366, 604
DpnII	GATC	2 cut(s)	364, 602
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	2 cut(s)	52, 667
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	2 cut(s)	48, 663
FauI	CCCGC	3 cut(s)	99, 117, 588
Fnu4HI	GCNGC	2 cut(s)	642, 705
FokI	GGATG	3 cut(s)	13, 475, 553
Fsp4HI	GCNGC	2 cut(s)	642, 705
GluI	GCNGC	2 cut(s)	642, 705
GsaI	CCCAGC	2 cut(s)	26, 410
GsuI	CTGGAG	1 cut(s)	579
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	2 cut(s)	52, 667
HinfI	GANTC	9 cut(s)	4, 76, 97, 115, 136, 157, 178, 529, 629
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	4 cut(s)	317, 515, 678, 695
Hpy188I	TCNGA	3 cut(s)	259, 628, 719
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	4 cut(s)	317, 515, 678, 695
Hpy99I	CGWCG	3 cut(s)	136, 157, 544
HpyAV	CCTTC	2 cut(s)	193, 391
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	5 cut(s)	209, 271, 308, 663, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	2 cut(s)	52, 667
Kzo9I	GATC	2 cut(s)	364, 602
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	653, 716
LweI	GCATC	3 cut(s)	35, 218, 506
MalI	GATC	2 cut(s)	366, 604
MboI	GATC	2 cut(s)	364, 602
MboII	GAAGA	2 cut(s)	10, 412
MluCI	AATT	3 cut(s)	321, 609, 708
MlyI	GAGTC	8 cut(s)	70, 91, 109, 130, 151, 172, 523, 638
MmeI	TCCRAC	2 cut(s)	197, 437
MnlI	CCTC	3 cut(s)	205, 296, 425
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	362, 597
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	2 cut(s)	364, 602
NlaIII	CATG	2 cut(s)	52, 667
NspI	RCATGY	1 cut(s)	667
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	508
PflMI	CCANNNNNTGG	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	643, 706
PleI	GAGTC	8 cut(s)	70, 91, 109, 130, 151, 172, 523, 637
PpsI	GAGTC	8 cut(s)	70, 91, 109, 130, 151, 172, 523, 637
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	2 cut(s)	22, 406
PspGI	CCWGG	1 cut(s)	595
PspXI	VCTCGAGB	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SatI	GCNGC	2 cut(s)	642, 705
Sau3AI	GATC	2 cut(s)	364, 602
SbfI	CCTGCAGG	1 cut(s)	273
SchI	GAGTC	8 cut(s)	70, 91, 109, 130, 151, 172, 523, 638
ScrFI	CCNGG	2 cut(s)	362, 597
SdaI	CCTGCAGG	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	35, 218, 506
SfcI	CTRYAG	2 cut(s)	269, 421
Sfr274I	CTCGAG	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
SphI	GCATGC	1 cut(s)	667
Sse8387I	CCTGCAGG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	321, 609, 708
SsiI	CCGC	3 cut(s)	92, 110, 581
StyD4I	CCNGG	2 cut(s)	360, 595
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	509, 539
TasI	AATT	3 cut(s)	321, 609, 708
TatI	WGTACW	1 cut(s)	512
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	2 cut(s)	641, 704
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	467
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.