MD05G1291200.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012588
Physical Location & Seq
Forward (+)
42280857 .. 42282721
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1291200.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGGTGTTGGCTCGCTTCGGCATTCTGCGTTGTTTTTCTTGTTTTTTTGCTTTAGTTCGGGTTCAAGTGTTCCAAAGAATCCTCTTTTGGAAGCAACCCACCAAAGAAGAACGCAAGTGAATCAAGAAAAGCATATACTTTCTGCATCTTCGGTGTATACTACGCAGCTCGATAATATTCCCACCGTCAATCCAAGTACTCTACCAACAACTCCCACACCGTTTGTGAACCCGACATACCCACCATCACCAACCACAACAGACCCAACCACAACTCCAATCCCAATACCACCGACCCTGACCCCGACAACTCCCACCACGACTCCCACCACGACTCCATCATCAGGTGGTACTTGGTGTATTGCAAGCCAATCTGCGGCACAGAATGCCTTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGCTGCAGACTGTTCAGCAATTAATCAGGGTGGAAGCTGTTATAACCCAAACACTCTTCAAGGTCATGCTTCCTACGCCTTCAATGACTACTATCAGAAGCACCCATCTCCTACCAGCTGCAGTTTCGGCGGAACAGCTCAACTCAGCAACACTGACCCAAGTACTGGTAGCTGTCGCTTTGCAGCTTCCTCATCATCAACCAGCATGAACTCACCACCAACGCCAACAATGTCGCCACCAACGCCAATGATGTCAACAACGCCATCAACACCAACAATGCCAACAACAACAACATCACCATACACCCCAAGCATCGCTACACCAGGTGGAGGATCAACAATTTATGGTGACTCGCCAACAGATTCCCCGAACTCAGCAACCTCAATCTCATCTTGCATGTTGCTGCTATTCATCATGACTGGGATCTTGGGGTCACTTCTCGCAGAAAATTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

295

Amino Acids

30.54

Weight (kDa)

5.57

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 118 - 188 2.2e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 1 cut(s) 158
AciI CCGC 2 cut(s) 377, 555
AclWI GGATC 2 cut(s) 766, 857
AdeI CACNNNGTG 1 cut(s) 752
AfaI GTAC 3 cut(s) 199, 352, 589
AfiI CCNNNNNNNGG 4 cut(s) 344, 376, 590, 755
AgsI TTSAA 3 cut(s) 66, 485, 508
AjnI CCWGG 1 cut(s) 748
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 8 cut(s) 169, 401, 428, 462, 543, 563, 597, 611
AluI AGCT 8 cut(s) 169, 401, 428, 462, 543, 563, 597, 611
AlwI GGATC 2 cut(s) 766, 857
ApeKI GCWGC 5 cut(s) 166, 428, 543, 608, 829
AseI ATTAAT 1 cut(s) 447
AsuHPI GGTGA 4 cut(s) 240, 630, 714, 785
BbvI GCAGC 5 cut(s) 178, 415, 530, 620, 816
BccI CCATC 4 cut(s) 253, 346, 538, 697
BciT130I CCWGG 1 cut(s) 750
BfmI CTRYAG 2 cut(s) 429, 544
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 6 cut(s) 167, 378, 429, 544, 609, 830
BlsI GCNGC 6 cut(s) 168, 379, 430, 545, 610, 831
BmcAI AGTACT 2 cut(s) 199, 589
Bme1390I CCNGG 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 750
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 2 cut(s) 155, 747
BmuI ACTGGG 1 cut(s) 855
BsaXI ACNNNNNCTCC 6 cut(s) 259, 289, 307, 319, 337, 349
Bsc4I CCNNNNNNNGG 4 cut(s) 344, 376, 590, 755
Bse1I ACTGG 2 cut(s) 595, 850
BseBI CCWGG 1 cut(s) 750
BseLI CCNNNNNNNGG 4 cut(s) 344, 376, 590, 755
BseMII CTCAG 2 cut(s) 583, 813
BseNI ACTGG 2 cut(s) 595, 850
BseXI GCAGC 5 cut(s) 178, 415, 530, 620, 816
BslI CCNNNNNNNGG 4 cut(s) 344, 376, 590, 755
BsmI GAATGC 2 cut(s) 22, 391
Bsp143I GATC 2 cut(s) 758, 849
BspACI CCGC 2 cut(s) 377, 555
BspCNI CTCAG 2 cut(s) 582, 812
BspHI TCATGA 1 cut(s) 840
BspMAI CTGCAG 2 cut(s) 433, 548
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 766, 857
BsrI ACTGG 2 cut(s) 595, 850
BssMI GATC 2 cut(s) 758, 849
BssNAI GTATAC 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 3 cut(s) 187, 222, 437
Bst6I CTCTTC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 14, 367
BstDEI CTNAG 2 cut(s) 569, 799
BstKTI GATC 2 cut(s) 761, 852
BstMBI GATC 2 cut(s) 758, 849
BstMWI GCNNNNNNNGC 4 cut(s) 386, 500, 552, 667
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 2 cut(s) 429, 544
BstV1I GCAGC 5 cut(s) 178, 415, 530, 620, 816
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
BstZ17I GTATAC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 724
BtsIMutI CAGTG 1 cut(s) 576
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 14, 367
CciI TCATGA 1 cut(s) 840
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 3 cut(s) 198, 351, 588
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 4 cut(s) 491, 631, 823, 841
CviQI GTAC 3 cut(s) 198, 351, 588
DdeI CTNAG 2 cut(s) 569, 799
DpnI GATC 2 cut(s) 760, 851
DpnII GATC 2 cut(s) 758, 849
DraIII CACNNNGTG 1 cut(s) 752
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
EciI GGCGGA 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 748
FaeI CATG 4 cut(s) 494, 634, 826, 844
FatI CATG 4 cut(s) 490, 630, 822, 840
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 6 cut(s) 167, 378, 429, 544, 609, 830
Fsp4HI GCNGC 6 cut(s) 167, 378, 429, 544, 609, 830
GluI GCNGC 6 cut(s) 167, 378, 429, 544, 609, 830
Hin1II CATG 4 cut(s) 494, 634, 826, 844
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HinfI GANTC 6 cut(s) 79, 121, 322, 334, 776, 788
HphI GGTGA 4 cut(s) 240, 630, 714, 785
Hpy166II GTNNAC 3 cut(s) 159, 229, 681
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 3 cut(s) 125, 404, 841
Hpy8I GTNNAC 3 cut(s) 159, 229, 681
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 3 cut(s) 187, 222, 437
HpyCH4V TGCA 7 cut(s) 146, 365, 394, 431, 546, 608, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 500, 552, 667
HpyF3I CTNAG 2 cut(s) 569, 799
Hsp92II CATG 4 cut(s) 494, 634, 826, 844
Kzo9I GATC 2 cut(s) 758, 849
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 5 cut(s) 178, 415, 530, 620, 816
LweI GCATC 2 cut(s) 155, 747
MabI ACCWGGT 1 cut(s) 748
MaeIII GTNAC 2 cut(s) 773, 858
MalI GATC 2 cut(s) 760, 851
MboI GATC 2 cut(s) 758, 849
MboII GAAGA 3 cut(s) 120, 141, 473
MflI RGATCY 1 cut(s) 849
MluCI AATT 3 cut(s) 444, 765, 874
MlyI GAGTC 3 cut(s) 316, 328, 770
MnlI CCTC 4 cut(s) 93, 625, 749, 817
MseI TTAA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 2 cut(s) 22, 391
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 386, 500, 552, 667
NdeII GATC 2 cut(s) 758, 849
NlaIII CATG 4 cut(s) 494, 634, 826, 844
NmuCI GTSAC 2 cut(s) 773, 858
NspI RCATGY 1 cut(s) 826
PagI TCATGA 1 cut(s) 840
PctI GAATGC 2 cut(s) 22, 391
PfeI GAWTC 3 cut(s) 79, 121, 788
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 6 cut(s) 168, 379, 430, 545, 610, 831
PleI GAGTC 3 cut(s) 316, 328, 770
PpsI GAGTC 3 cut(s) 316, 328, 770
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PstI CTGCAG 2 cut(s) 433, 548
PsuI RGATCY 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 543
RsaI GTAC 3 cut(s) 199, 352, 589
RsaNI GTAC 3 cut(s) 198, 351, 588
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 6 cut(s) 167, 378, 429, 544, 609, 830
Sau3AI GATC 2 cut(s) 758, 849
ScaI AGTACT 2 cut(s) 199, 589
SchI GAGTC 3 cut(s) 316, 328, 770
ScrFI CCNGG 1 cut(s) 750
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 2 cut(s) 155, 747
SfcI CTRYAG 2 cut(s) 429, 544
Sse9I AATT 3 cut(s) 444, 765, 874
SsiI CCGC 2 cut(s) 377, 555
SspI AATATT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 3 cut(s) 187, 222, 437
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 444, 765, 874
TatI WGTACW 2 cut(s) 197, 587
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 79, 121, 788
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 773, 858
TseI GCWGC 5 cut(s) 166, 428, 543, 608, 829
Tsp45I GTSAC 2 cut(s) 773, 858
TspDTI ATGAA 2 cut(s) 647, 826
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 1 cut(s) 590
VspI ATTAAT 1 cut(s) 447
XceI RCATGY 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 158
ZrmI AGTACT 2 cut(s) 199, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.