Rw5G008750

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012588
Physical Location & Seq
Reverse (-)
9471687 .. 9473467
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008750.1

Sequence Viewer

Length: 915 bp
ATGGGTGTTAGCTCTCTTCGGCATTCTGCATTATTTTTCCTGTTTCTCTTCTTTAGTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCTGCAGTGTCTACGACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAATGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACAACCCCGATGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCACTACAACTCCAACGACTCCCTTCACAACTCCAACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGACCCAAGTAGTGGTAGCTGTCGCTATTCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACCAGACTCCACCATCGACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGTTCACTACTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

304

Amino Acids

31.34

Weight (kDa)

5.67

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 142 - 212 1.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 662
AccI GTMKAC 1 cut(s) 158
AciI CCGC 3 cut(s) 299, 317, 776
AclWI GGATC 2 cut(s) 567, 805
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 3 cut(s) 66, 521, 580
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 9 cut(s) 12, 169, 449, 473, 534, 605, 615, 669, 702
AluI AGCT 9 cut(s) 12, 169, 449, 473, 534, 605, 615, 669, 702
AlwI GGATC 2 cut(s) 567, 805
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 703
ApeKI GCWGC 2 cut(s) 836, 899
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 504
AvaI CYCGRG 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 848, 911
BccI CCATC 3 cut(s) 739, 769, 826
BciT130I CCWGG 1 cut(s) 792
BcnI CCSGG 1 cut(s) 557
BfmI CTRYAG 3 cut(s) 150, 464, 616
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 2 cut(s) 837, 900
BlsI GCNGC 2 cut(s) 838, 901
Bme1390I CCNGG 2 cut(s) 557, 792
BmeT110I CYCGRG 1 cut(s) 703
BmrFI CCNGG 2 cut(s) 557, 792
BmsI GCATC 3 cut(s) 242, 413, 701
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 774
BpuMI CCSGG 1 cut(s) 557
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 792
BseGI GGATG 3 cut(s) 233, 683, 761
BseLI CCNNNNNNNGG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 848, 911
BseYI CCCAGC 3 cut(s) 165, 229, 601
BsgI GTGCAG 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 1 cut(s) 556
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 811
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 2 cut(s) 559, 797
BspACI CCGC 3 cut(s) 299, 317, 776
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 154, 468
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 2 cut(s) 567, 805
BssMI GATC 2 cut(s) 559, 797
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 205, 509
Bst6I CTCTTC 2 cut(s) 21, 53
BstC8I GCNNGC 2 cut(s) 439, 860
BstF5I GGATG 3 cut(s) 233, 683, 761
BstKTI GATC 2 cut(s) 562, 800
BstMBI GATC 2 cut(s) 559, 797
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 2 cut(s) 555, 790
BstSFI CTRYAG 3 cut(s) 150, 464, 616
BstV1I GCAGC 2 cut(s) 848, 911
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 883
BtsCI GGATG 3 cut(s) 233, 683, 761
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 648
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 439, 860
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 708
CviAII CATG 3 cut(s) 125, 256, 859
CviQI GTAC 1 cut(s) 708
DpnI GATC 2 cut(s) 561, 799
DpnII GATC 2 cut(s) 559, 797
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 790
FaeI CATG 3 cut(s) 128, 259, 862
FaqI GGGAC 1 cut(s) 811
FatI CATG 3 cut(s) 124, 255, 858
FauI CCCGC 3 cut(s) 306, 324, 783
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 837, 900
FokI GGATG 3 cut(s) 220, 670, 748
Fsp4HI GCNGC 2 cut(s) 837, 900
GluI GCNGC 2 cut(s) 837, 900
GsaI CCCAGC 3 cut(s) 169, 233, 605
GsuI CTGGAG 1 cut(s) 774
HapII CCGG 1 cut(s) 556
Hin1II CATG 3 cut(s) 128, 259, 862
HpaII CCGG 1 cut(s) 556
HphI GGTGA 1 cut(s) 504
Hpy166II GTNNAC 5 cut(s) 159, 512, 710, 873, 890
Hpy188I TCNGA 3 cut(s) 454, 823, 914
Hpy188III TCNNGA 2 cut(s) 125, 476
Hpy8I GTNNAC 5 cut(s) 159, 512, 710, 873, 890
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 379, 586
HpyCH4III ACNGT 2 cut(s) 205, 509
HpyCH4V TGCA 7 cut(s) 29, 152, 404, 466, 503, 858, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
Hsp92II CATG 3 cut(s) 128, 259, 862
Kzo9I GATC 2 cut(s) 559, 797
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 2 cut(s) 848, 911
LweI GCATC 3 cut(s) 242, 413, 701
MalI GATC 2 cut(s) 561, 799
MboI GATC 2 cut(s) 559, 797
MboII GAAGA 4 cut(s) 8, 40, 217, 607
MluCI AATT 3 cut(s) 516, 804, 903
MlyI GAGTC 8 cut(s) 205, 277, 298, 316, 337, 358, 718, 833
MmeI TCCRAC 5 cut(s) 124, 224, 383, 404, 632
MnlI CCTC 4 cut(s) 93, 400, 491, 620
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 557, 792
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 557
NdeII GATC 2 cut(s) 559, 797
NlaIII CATG 3 cut(s) 128, 259, 862
NspI RCATGY 1 cut(s) 862
PaeI GCATGC 1 cut(s) 862
PaeR7I CTCGAG 1 cut(s) 703
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 121, 173, 178
PflMI CCANNNNNTGG 1 cut(s) 662
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 2 cut(s) 838, 901
PleI GAGTC 8 cut(s) 205, 277, 298, 316, 337, 358, 718, 832
PpsI GAGTC 8 cut(s) 205, 277, 298, 316, 337, 358, 718, 832
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 165, 229, 601
PspGI CCWGG 1 cut(s) 790
PspXI VCTCGAGB 1 cut(s) 703
PstI CTGCAG 2 cut(s) 154, 468
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 615
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SatI GCNGC 2 cut(s) 837, 900
Sau3AI GATC 2 cut(s) 559, 797
SbfI CCTGCAGG 1 cut(s) 468
SchI GAGTC 8 cut(s) 205, 277, 298, 316, 337, 358, 718, 833
ScrFI CCNGG 2 cut(s) 557, 792
SdaI CCTGCAGG 1 cut(s) 468
SfaNI GCATC 3 cut(s) 242, 413, 701
SfcI CTRYAG 3 cut(s) 150, 464, 616
Sfr274I CTCGAG 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SphI GCATGC 1 cut(s) 862
Sse8387I CCTGCAGG 1 cut(s) 468
Sse9I AATT 3 cut(s) 516, 804, 903
SsiI CCGC 3 cut(s) 299, 317, 776
StyD4I CCNGG 2 cut(s) 555, 790
TaaI ACNGT 2 cut(s) 205, 509
TaqI TCGA 3 cut(s) 176, 704, 734
TasI AATT 3 cut(s) 516, 804, 903
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 3 cut(s) 121, 173, 178
TscAI CASTG 2 cut(s) 159, 655
TseI GCWGC 2 cut(s) 836, 899
TspDTI ATGAA 3 cut(s) 113, 141, 669
TspRI CASTG 2 cut(s) 159, 655
Van91I CCANNNNNTGG 1 cut(s) 662
XceI RCATGY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.