Rroxscaffold_1G00063600

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012588
Physical Location & Seq
Forward (+)
85425798 .. 85428558
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063600.1

Sequence Viewer

Length: 951 bp
ATGAGTTCCCCTCATACAAATCCTAGCAACTTCTCCAATGATTTCAATTCAAAAGAAAAAGGAACTTACCATGCTTTCAATTTCTTCAGGTTCAAGTGTTCCAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATTTACTTTTCTCATCTGCAGTGTCTACGACCCAGCTTGATTCGATTCCTATCGTAAATCCAAGTCCAAATGTAATGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACTCCCACCACAACCCCGACCACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCACTATAACCCCAACAACTCCCTATACAACTCCAACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCATGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGACCCAAGTAGTGGTAGCTGTCGCTATCCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACCAGACTCCACCATCGACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACACAGCCAACTCCATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTACTTGCAGCAATTTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

316

Amino Acids

32.9

Weight (kDa)

6.16

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 154 - 224 1.3e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 1 cut(s) 185
AciI CCGC 3 cut(s) 335, 353, 812
AclWI GGATC 2 cut(s) 603, 841
AcuI CTGAAG 2 cut(s) 70, 471
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 6 cut(s) 46, 51, 79, 94, 557, 616
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 8 cut(s) 196, 485, 509, 570, 641, 651, 705, 738
AluI AGCT 8 cut(s) 196, 485, 509, 570, 641, 651, 705, 738
AlwI GGATC 2 cut(s) 603, 841
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 739
ApeKI GCWGC 1 cut(s) 935
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 540
AvaI CYCGRG 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 947
BccI CCATC 5 cut(s) 724, 775, 805, 862, 890
BciT130I CCWGG 1 cut(s) 828
BcnI CCSGG 1 cut(s) 593
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 3 cut(s) 177, 500, 652
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 2 cut(s) 593, 828
BmeT110I CYCGRG 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 593, 828
BmsI GCATC 3 cut(s) 269, 449, 737
BpiI GAAGAC 1 cut(s) 244
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 1 cut(s) 828
BseGI GGATG 3 cut(s) 260, 719, 797
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 947
BseYI CCCAGC 3 cut(s) 192, 256, 637
BsgI GTGCAG 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 739
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 847
BslI CCNNNNNNNGG 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 847
BsoBI CYCGRG 1 cut(s) 739
Bsp143I GATC 2 cut(s) 595, 833
BspACI CCGC 3 cut(s) 335, 353, 812
BspHI TCATGA 1 cut(s) 151
BspMAI CTGCAG 2 cut(s) 181, 504
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 603, 841
BssMI GATC 2 cut(s) 595, 833
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 475, 896
BstF5I GGATG 3 cut(s) 260, 719, 797
BstKTI GATC 2 cut(s) 598, 836
BstMBI GATC 2 cut(s) 595, 833
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 591, 826
BstSFI CTRYAG 3 cut(s) 177, 500, 652
BstV1I GCAGC 1 cut(s) 947
BstV2I GAAGAC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 919
BtsCI GGATG 3 cut(s) 260, 719, 797
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 684
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 475, 896
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 151
Csp6I GTAC 1 cut(s) 744
CviAII CATG 5 cut(s) 71, 152, 283, 599, 895
CviQI GTAC 1 cut(s) 744
DpnI GATC 2 cut(s) 597, 835
DpnII GATC 2 cut(s) 595, 833
Eco57I CTGAAG 2 cut(s) 70, 471
Eco88I CYCGRG 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 826
FaeI CATG 5 cut(s) 74, 155, 286, 602, 898
FaqI GGGAC 1 cut(s) 847
FatI CATG 5 cut(s) 70, 151, 282, 598, 894
FauI CCCGC 3 cut(s) 342, 360, 819
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 3 cut(s) 247, 706, 784
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 936
GsaI CCCAGC 3 cut(s) 196, 260, 641
GsuI CTGGAG 1 cut(s) 810
HapII CCGG 1 cut(s) 592
Hin1II CATG 5 cut(s) 74, 155, 286, 602, 898
HinfI GANTC 9 cut(s) 148, 200, 205, 238, 340, 358, 379, 760, 860
HpaII CCGG 1 cut(s) 592
HphI GGTGA 1 cut(s) 540
Hpy166II GTNNAC 4 cut(s) 186, 548, 746, 909
Hpy188I TCNGA 3 cut(s) 490, 859, 950
Hpy188III TCNNGA 2 cut(s) 152, 512
Hpy8I GTNNAC 4 cut(s) 186, 548, 746, 909
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 622
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 179, 440, 502, 539, 894, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
Hsp92II CATG 5 cut(s) 74, 155, 286, 602, 898
Kzo9I GATC 2 cut(s) 595, 833
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 1 cut(s) 947
LweI GCATC 3 cut(s) 269, 449, 737
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 924
MalI GATC 2 cut(s) 597, 835
MboI GATC 2 cut(s) 595, 833
MboII GAAGA 3 cut(s) 76, 244, 643
MluCI AATT 5 cut(s) 46, 79, 552, 840, 939
MlyI GAGTC 6 cut(s) 232, 334, 352, 373, 754, 869
MmeI TCCRAC 3 cut(s) 151, 440, 668
MnlI CCTC 5 cut(s) 21, 120, 436, 527, 656
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 2 cut(s) 593, 828
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 1 cut(s) 608
NciI CCSGG 1 cut(s) 593
NdeII GATC 2 cut(s) 595, 833
NlaIII CATG 5 cut(s) 74, 155, 286, 602, 898
NmuCI GTSAC 1 cut(s) 924
NspI RCATGY 1 cut(s) 898
PaeI GCATGC 1 cut(s) 898
PaeR7I CTCGAG 1 cut(s) 739
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 3 cut(s) 148, 200, 205
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 6 cut(s) 232, 334, 352, 373, 754, 868
PpsI GAGTC 6 cut(s) 232, 334, 352, 373, 754, 868
PsiI TTATAA 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 826
PspFI CCCAGC 3 cut(s) 192, 256, 637
PspGI CCWGG 1 cut(s) 826
PspXI VCTCGAGB 1 cut(s) 739
PstI CTGCAG 2 cut(s) 181, 504
PstNI CAGNNNCTG 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 651
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 2 cut(s) 595, 833
SbfI CCTGCAGG 1 cut(s) 504
SchI GAGTC 6 cut(s) 232, 334, 352, 373, 754, 869
ScrFI CCNGG 2 cut(s) 593, 828
SdaI CCTGCAGG 1 cut(s) 504
SfaNI GCATC 3 cut(s) 269, 449, 737
SfcI CTRYAG 3 cut(s) 177, 500, 652
Sfr274I CTCGAG 1 cut(s) 739
SlaI CTCGAG 1 cut(s) 739
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SphI GCATGC 1 cut(s) 898
Sse8387I CCTGCAGG 1 cut(s) 504
Sse9I AATT 5 cut(s) 46, 79, 552, 840, 939
SsiI CCGC 3 cut(s) 335, 353, 812
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 591, 826
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 203, 740, 770
TasI AATT 5 cut(s) 46, 79, 552, 840, 939
TatI WGTACW 1 cut(s) 743
TfiI GAWTC 3 cut(s) 148, 200, 205
TscAI CASTG 2 cut(s) 186, 691
TseFI GTSAC 1 cut(s) 924
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 1 cut(s) 924
TspDTI ATGAA 2 cut(s) 140, 168
TspRI CASTG 2 cut(s) 186, 691
Van91I CCANNNNNTGG 1 cut(s) 698
XceI RCATGY 1 cut(s) 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XhoI CTCGAG 1 cut(s) 739
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.