Rh5AG100100

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012588
Physical Location & Seq
Reverse (-)
9228271 .. 9232101
3831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG100100.1

Sequence Viewer

Length: 924 bp
ATGGGTGTTAGCTCTCTTCGGCATTCTGCATTATTTTTCCTGTTTCTCTTCTTTAGTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCTGCAGTGTCTACTACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAACGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACAACCCCAACGACTCCCACTACAATCCCGCCAACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCACTACAACCCCGACAACTCCCTTTACAACTCCGACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGATCCAAGTAGTGGTAGCTGTCGCTATCCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACGGTCCTTACCAGACTCCACCATCAACACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCTGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

307

Amino Acids

31.61

Weight (kDa)

5.67

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 142 - 212 1.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 662
AccI GTMKAC 1 cut(s) 158
AciI CCGC 3 cut(s) 299, 317, 785
AclWI GGATC 3 cut(s) 567, 647, 814
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 662, 719
AgsI TTSAA 3 cut(s) 66, 521, 580
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 9 cut(s) 12, 169, 449, 473, 534, 605, 615, 669, 702
AluI AGCT 9 cut(s) 12, 169, 449, 473, 534, 605, 615, 669, 702
AlwI GGATC 3 cut(s) 567, 647, 814
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 703
ApeKI GCWGC 2 cut(s) 845, 908
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 504
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 857, 920
BccI CCATC 4 cut(s) 688, 748, 778, 835
BciT130I CCWGG 1 cut(s) 801
BcnI CCSGG 1 cut(s) 557
BfmI CTRYAG 3 cut(s) 150, 464, 616
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 2 cut(s) 846, 909
BlsI GCNGC 2 cut(s) 847, 910
Bme1390I CCNGG 2 cut(s) 557, 801
Bme18I GGWCC 1 cut(s) 722
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 722
BmrFI CCNGG 2 cut(s) 557, 801
BmsI GCATC 3 cut(s) 242, 413, 701
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 557
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 719
BseBI CCWGG 1 cut(s) 801
BseGI GGATG 3 cut(s) 233, 683, 770
BseLI CCNNNNNNNGG 2 cut(s) 662, 719
BseXI GCAGC 2 cut(s) 857, 920
BseYI CCCAGC 3 cut(s) 165, 229, 601
BsgI GTGCAG 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 1 cut(s) 556
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 2 cut(s) 662, 719
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 3 cut(s) 559, 652, 806
BspACI CCGC 3 cut(s) 299, 317, 785
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 154, 468
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 567, 647, 814
BssMI GATC 3 cut(s) 559, 652, 806
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 205, 509, 722
Bst6I CTCTTC 2 cut(s) 21, 53
BstC8I GCNNGC 2 cut(s) 439, 869
BstF5I GGATG 3 cut(s) 233, 683, 770
BstKTI GATC 3 cut(s) 562, 655, 809
BstMBI GATC 3 cut(s) 559, 652, 806
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 555, 799
BstSFI CTRYAG 3 cut(s) 150, 464, 616
BstV1I GCAGC 2 cut(s) 857, 920
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 233, 683, 770
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 648
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 439, 869
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 708
CviAII CATG 3 cut(s) 125, 256, 868
CviQI GTAC 1 cut(s) 708
DpnI GATC 3 cut(s) 561, 654, 808
DpnII GATC 3 cut(s) 559, 652, 806
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 799
FaeI CATG 3 cut(s) 128, 259, 871
FaqI GGGAC 1 cut(s) 820
FatI CATG 3 cut(s) 124, 255, 867
FauI CCCGC 3 cut(s) 306, 324, 792
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 846, 909
FokI GGATG 3 cut(s) 220, 670, 757
Fsp4HI GCNGC 2 cut(s) 846, 909
GluI GCNGC 2 cut(s) 846, 909
GsaI CCCAGC 3 cut(s) 169, 233, 605
GsuI CTGGAG 1 cut(s) 783
HapII CCGG 1 cut(s) 556
Hin1II CATG 3 cut(s) 128, 259, 871
HinfI GANTC 9 cut(s) 121, 173, 178, 211, 283, 322, 343, 733, 833
HpaII CCGG 1 cut(s) 556
HphI GGTGA 1 cut(s) 504
Hpy166II GTNNAC 4 cut(s) 159, 512, 710, 882
Hpy188I TCNGA 4 cut(s) 381, 454, 832, 923
Hpy188III TCNNGA 2 cut(s) 125, 476
Hpy8I GTNNAC 4 cut(s) 159, 512, 710, 882
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 205, 509, 722
HpyCH4V TGCA 7 cut(s) 29, 152, 404, 466, 503, 867, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
Hsp92II CATG 3 cut(s) 128, 259, 871
Kzo9I GATC 3 cut(s) 559, 652, 806
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 2 cut(s) 857, 920
LweI GCATC 3 cut(s) 242, 413, 701
MaeIII GTNAC 2 cut(s) 205, 897
MalI GATC 3 cut(s) 561, 654, 808
MboI GATC 3 cut(s) 559, 652, 806
MboII GAAGA 4 cut(s) 8, 40, 217, 607
MluCI AATT 3 cut(s) 516, 813, 912
MlyI GAGTC 6 cut(s) 205, 277, 316, 337, 727, 842
MmeI TCCRAC 4 cut(s) 124, 224, 404, 632
MnlI CCTC 4 cut(s) 93, 400, 491, 620
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 557, 801
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 557
NdeII GATC 3 cut(s) 559, 652, 806
NlaIII CATG 3 cut(s) 128, 259, 871
NmuCI GTSAC 1 cut(s) 897
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 703
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 121, 173, 178
PflMI CCANNNNNTGG 1 cut(s) 662
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 2 cut(s) 847, 910
PleI GAGTC 6 cut(s) 205, 277, 316, 337, 727, 841
PpsI GAGTC 6 cut(s) 205, 277, 316, 337, 727, 841
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 799
PspFI CCCAGC 3 cut(s) 165, 229, 601
PspGI CCWGG 1 cut(s) 799
PspPI GGNCC 1 cut(s) 722
PspXI VCTCGAGB 1 cut(s) 703
PstI CTGCAG 2 cut(s) 154, 468
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 615
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SatI GCNGC 2 cut(s) 846, 909
Sau3AI GATC 3 cut(s) 559, 652, 806
Sau96I GGNCC 1 cut(s) 722
SbfI CCTGCAGG 1 cut(s) 468
SchI GAGTC 6 cut(s) 205, 277, 316, 337, 727, 842
ScrFI CCNGG 2 cut(s) 557, 801
SdaI CCTGCAGG 1 cut(s) 468
SfaNI GCATC 3 cut(s) 242, 413, 701
SfcI CTRYAG 3 cut(s) 150, 464, 616
Sfr274I CTCGAG 1 cut(s) 703
SinI GGWCC 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SphI GCATGC 1 cut(s) 871
Sse8387I CCTGCAGG 1 cut(s) 468
Sse9I AATT 3 cut(s) 516, 813, 912
SsiI CCGC 3 cut(s) 299, 317, 785
StyD4I CCNGG 2 cut(s) 555, 799
TaaI ACNGT 3 cut(s) 205, 509, 722
TaqI TCGA 2 cut(s) 176, 704
TasI AATT 3 cut(s) 516, 813, 912
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 3 cut(s) 121, 173, 178
TscAI CASTG 2 cut(s) 159, 655
TseFI GTSAC 1 cut(s) 897
TseI GCWGC 2 cut(s) 845, 908
Tsp45I GTSAC 1 cut(s) 897
TspDTI ATGAA 2 cut(s) 113, 141
TspRI CASTG 2 cut(s) 159, 655
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 722
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XhoI CTCGAG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.