Rh5BG096800

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012588
Physical Location & Seq
Reverse (-)
8773834 .. 8775662
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG096800.1

Sequence Viewer

Length: 966 bp
ATGGGTGTTAGCTCTCTTCGGCATTCTGCATTATTTTTCCTGTTTCTCTTCTTTAGTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCTGCAGTGTCTACTACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAACGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACTCCCACCACAACCCCAACGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACGACTCCCACTACAACCCCGACGACTCCCACTACAACCCCAACAACTCCCTTTACAACTCCGACAACTCCCTCTACAACTCCGACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGATCCAAGTAGTGGTAGCTGTCGCTATCCATCATCCACAGCATCAACCAGCTCGAGTACACCACCTTACCAGACTCCACCATCGATACCGACAAGTATGACAACGCCACCATCCCCGACCACCCCGCTTATAGATACTCCAGGTGGATCAACAATTTATGGTTCGCCATCAGAGTCCCCCAACGCAGCCAACTCTATCTCATCTTGCATGCTTCTGCCGTCCACCACACTCTTGGGGTCACTTCTTGCAGCAATTTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

321

Amino Acids

32.97

Weight (kDa)

5.67

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 159 - 229 1.3e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
Acc36I ACCTGC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 158
AciI CCGC 3 cut(s) 308, 326, 827
AclWI GGATC 3 cut(s) 618, 698, 856
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 760
AfiI CCNNNNNNNGG 1 cut(s) 713
AgsI TTSAA 3 cut(s) 66, 572, 631
AjnI CCWGG 1 cut(s) 841
AluBI AGCT 9 cut(s) 12, 169, 500, 524, 585, 656, 666, 720, 753
AluI AGCT 9 cut(s) 12, 169, 500, 524, 585, 656, 666, 720, 753
AlwI GGATC 3 cut(s) 618, 698, 856
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 754
ApeKI GCWGC 2 cut(s) 887, 950
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 754
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 899, 962
BccI CCATC 4 cut(s) 739, 790, 820, 877
BceAI ACGGC 1 cut(s) 904
BciT130I CCWGG 1 cut(s) 843
BcnI CCSGG 1 cut(s) 608
BfmI CTRYAG 3 cut(s) 150, 515, 667
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 2 cut(s) 888, 951
BlsI GCNGC 2 cut(s) 889, 952
Bme1390I CCNGG 2 cut(s) 608, 843
BmeT110I CYCGRG 1 cut(s) 754
BmrFI CCNGG 2 cut(s) 608, 843
BmsI GCATC 3 cut(s) 242, 464, 752
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 785
Bsc4I CCNNNNNNNGG 1 cut(s) 713
BseBI CCWGG 1 cut(s) 843
BseCI ATCGAT 1 cut(s) 785
BseGI GGATG 3 cut(s) 233, 734, 812
BseLI CCNNNNNNNGG 1 cut(s) 713
BseXI GCAGC 2 cut(s) 899, 962
BseYI CCCAGC 3 cut(s) 165, 229, 652
BsgI GTGCAG 1 cut(s) 573
BshVI ATCGAT 1 cut(s) 785
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 1 cut(s) 607
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 862
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 754
Bsp143I GATC 3 cut(s) 610, 703, 848
BspACI CCGC 3 cut(s) 308, 326, 827
BspDI ATCGAT 1 cut(s) 785
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 154, 519
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 3 cut(s) 618, 698, 856
BssMI GATC 3 cut(s) 610, 703, 848
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 2 cut(s) 205, 560
Bst6I CTCTTC 2 cut(s) 21, 53
BstC8I GCNNGC 2 cut(s) 490, 911
BstF5I GGATG 3 cut(s) 233, 734, 812
BstKTI GATC 3 cut(s) 613, 706, 851
BstMBI GATC 3 cut(s) 610, 703, 848
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 843
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 2 cut(s) 606, 841
BstSFI CTRYAG 3 cut(s) 150, 515, 667
BstV1I GCAGC 2 cut(s) 899, 962
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 934
Bsu15I ATCGAT 1 cut(s) 785
BsuTUI ATCGAT 1 cut(s) 785
BtsCI GGATG 3 cut(s) 233, 734, 812
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 699
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 490, 911
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 785
Csp6I GTAC 1 cut(s) 759
CviAII CATG 3 cut(s) 125, 256, 910
CviQI GTAC 1 cut(s) 759
DpnI GATC 3 cut(s) 612, 705, 850
DpnII GATC 3 cut(s) 610, 703, 848
Eam1104I CTCTTC 2 cut(s) 21, 53
EarI CTCTTC 2 cut(s) 21, 53
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 841
FaeI CATG 3 cut(s) 128, 259, 913
FaqI GGGAC 1 cut(s) 862
FatI CATG 3 cut(s) 124, 255, 909
FauI CCCGC 3 cut(s) 315, 333, 834
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 888, 951
FokI GGATG 3 cut(s) 220, 721, 799
Fsp4HI GCNGC 2 cut(s) 888, 951
GluI GCNGC 2 cut(s) 888, 951
GsaI CCCAGC 3 cut(s) 169, 233, 656
GsuI CTGGAG 1 cut(s) 825
HapII CCGG 1 cut(s) 607
Hin1II CATG 3 cut(s) 128, 259, 913
HpaII CCGG 1 cut(s) 607
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 4 cut(s) 159, 563, 761, 924
Hpy188I TCNGA 5 cut(s) 411, 432, 505, 874, 965
Hpy188III TCNNGA 2 cut(s) 125, 527
Hpy8I GTNNAC 4 cut(s) 159, 563, 761, 924
Hpy99I CGWCG 2 cut(s) 352, 373
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 205, 560
HpyCH4V TGCA 7 cut(s) 29, 152, 455, 517, 554, 909, 950
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
Hsp92II CATG 3 cut(s) 128, 259, 913
Kzo9I GATC 3 cut(s) 610, 703, 848
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 2 cut(s) 899, 962
LweI GCATC 3 cut(s) 242, 464, 752
MaeIII GTNAC 2 cut(s) 205, 939
MalI GATC 3 cut(s) 612, 705, 850
MboI GATC 3 cut(s) 610, 703, 848
MboII GAAGA 4 cut(s) 8, 40, 217, 658
MluCI AATT 3 cut(s) 567, 855, 954
MlyI GAGTC 8 cut(s) 205, 286, 307, 325, 346, 367, 769, 884
MmeI TCCRAC 5 cut(s) 124, 224, 434, 455, 683
MnlI CCTC 5 cut(s) 93, 430, 451, 542, 671
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 1 cut(s) 607
MspR9I CCNGG 2 cut(s) 608, 843
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 843
MwoI GCNNNNNNNGC 1 cut(s) 623
NciI CCSGG 1 cut(s) 608
NdeII GATC 3 cut(s) 610, 703, 848
NlaIII CATG 3 cut(s) 128, 259, 913
NmuCI GTSAC 1 cut(s) 939
NspI RCATGY 1 cut(s) 913
PaeI GCATGC 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 754
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 121, 173, 178
PflMI CCANNNNNTGG 1 cut(s) 713
PfoI TCCNGGA 1 cut(s) 606
PkrI GCNGC 2 cut(s) 889, 952
PleI GAGTC 8 cut(s) 205, 286, 307, 325, 346, 367, 769, 883
PpsI GAGTC 8 cut(s) 205, 286, 307, 325, 346, 367, 769, 883
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 841
PspFI CCCAGC 3 cut(s) 165, 229, 652
PspGI CCWGG 1 cut(s) 841
PspXI VCTCGAGB 1 cut(s) 754
PstI CTGCAG 2 cut(s) 154, 519
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 1 cut(s) 760
RsaNI GTAC 1 cut(s) 759
SatI GCNGC 2 cut(s) 888, 951
Sau3AI GATC 3 cut(s) 610, 703, 848
SbfI CCTGCAGG 1 cut(s) 519
SchI GAGTC 8 cut(s) 205, 286, 307, 325, 346, 367, 769, 884
ScrFI CCNGG 2 cut(s) 608, 843
SdaI CCTGCAGG 1 cut(s) 519
SfaNI GCATC 3 cut(s) 242, 464, 752
SfcI CTRYAG 3 cut(s) 150, 515, 667
Sfr274I CTCGAG 1 cut(s) 754
SlaI CTCGAG 1 cut(s) 754
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SphI GCATGC 1 cut(s) 913
Sse8387I CCTGCAGG 1 cut(s) 519
Sse9I AATT 3 cut(s) 567, 855, 954
SsiI CCGC 3 cut(s) 308, 326, 827
StyD4I CCNGG 2 cut(s) 606, 841
TaaI ACNGT 2 cut(s) 205, 560
TaqI TCGA 3 cut(s) 176, 755, 785
TasI AATT 3 cut(s) 567, 855, 954
TatI WGTACW 1 cut(s) 758
TfiI GAWTC 3 cut(s) 121, 173, 178
TscAI CASTG 2 cut(s) 159, 706
TseFI GTSAC 1 cut(s) 939
TseI GCWGC 2 cut(s) 887, 950
Tsp45I GTSAC 1 cut(s) 939
TspDTI ATGAA 2 cut(s) 113, 141
TspRI CASTG 2 cut(s) 159, 706
Van91I CCANNNNNTGG 1 cut(s) 713
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XhoI CTCGAG 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.