Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012588

Physical Location & Seq

Genomic Coordinates Reverse (-)

3645292 .. 3648700

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G074400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGTGTTAGCTCTCTTCGGCATTCTGCGTTATTTTTCTTGTTTCTTTTCTTTAGTTCAGGTTCAAGTGCTCCAAAGAATCCTCCTGTGGAAGCAACCCACCGAAGCAACACACAAGTGAATCGTATGCTTTTCTCATCTTCGGTGTATGCTACCCAGCTTGATACAATCCCTGTAGTCAATCCAAGTCCAACTGGATTGACTCCCACACCTTTTGTGAACCCGACAACATCACCACCAGCACCTACCACAACAGACCCAATCACAACCCCAACCCCAACACCACCAACCACAACCCCAACCCCAACACCACCAACCACAACAGACCCAGGCACAATGCCAACGCCAACGCCACCAACCACAACCCTGACCCCGACCACTCCCACCACCACAACTCCTACATCATCAGGTGGAAATTGGTGTATTGCCAGCCAAGCAGCTTCACAAACTGCCTTACAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTGCAGCTATTCAACAAGGCGGAAGCTGTTATAACCCAAACACTCTCCGTGATCACGCTTCCTATGCCTTCAATGATTACTACCACAAGAACCCAGCTCCTACTAGCTGCAATTTTGGAGGAACAGCTCAAACCACCAACACTGACCCAAGTACCGGTAGTTGTCGCTATCCATCATCCACAGCATCAACCAGCACATATTCACCAGTTAACCCGTCACCACCACCCCCAACAACGATGACAACACCAACAATGCCGACAACTCCATACACCCCAAGCATTGCTACACCAGGTGGATCAACAATTTATGGTTCGGAACCAACAGAGTCCCCCAACTCAGCCACCTCTATCTCATCTTGCATGCTGCTGCTATTCACCACGACTGGGCTCTTGGGGTCACTTCTTGCAGCAAATTATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

307

Amino Acids

31.58

Weight (kDa)

5.33

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06330 FvH4_3g06330 FvH4_3g06330 FvH4_3g06330
malus_domestica	MD05G1291200.v1.1 MD10G1266900.v1.1
prunus_persica	Prupe.4G074400_v2.0.a1
pyrus_communis	pycom05g26770 pycom10g22310
rosa_chinensis	RchiOBHm_Chr5g0012981
rosa_laevigata	RLG00000031974
rosa_multiflora	Rmu_sc0005409.1_g000019 Rmu_sc0010837.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063600
rosa_rugosa	Rorug05G0005700
rosa_samantha	Rh5AG100100 Rh5BG096800 Rh5DG095700
rosa_wichuraiana	Rw5G008750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	1 cut(s)	802
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	2 cut(s)	653, 882
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	3 cut(s)	66, 512, 571
AjnI	CCWGG	2 cut(s)	328, 787
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	9 cut(s)	12, 160, 440, 464, 506, 525, 596, 606, 626
AluI	AGCT	9 cut(s)	12, 160, 440, 464, 506, 525, 596, 606, 626
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	802
ApeKI	GCWGC	6 cut(s)	437, 503, 606, 862, 865, 905
AsiGI	ACCGGT	1 cut(s)	653
AsuHPI	GGTGA	4 cut(s)	225, 693, 708, 865
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BanII	GRGCYC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	6 cut(s)	449, 515, 593, 849, 852, 917
BccI	CCATC	1 cut(s)	679
BciT130I	CCWGG	2 cut(s)	330, 789
BclI	TGATCA	1 cut(s)	550
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	6 cut(s)	438, 504, 607, 863, 866, 906
BlsI	GCNGC	6 cut(s)	439, 505, 608, 864, 867, 907
Bme1390I	CCNGG	2 cut(s)	330, 789
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	2 cut(s)	330, 789
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	1 cut(s)	692
BmuI	ACTGGG	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 882
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	3 cut(s)	199, 704, 886
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	330, 789
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	2 cut(s)	653, 882
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	3 cut(s)	199, 704, 886
BseXI	GCAGC	6 cut(s)	449, 515, 593, 849, 852, 917
BseYI	CCCAGC	2 cut(s)	156, 592
BsgI	GTGCAG	2 cut(s)	513, 522
BshTI	ACCGGT	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	2 cut(s)	653, 882
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	73, 888
Bsp143I	GATC	2 cut(s)	550, 794
BspACI	CCGC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	848
BspLI	GGNNCC	1 cut(s)	816
BspPI	GGATC	1 cut(s)	802
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	3 cut(s)	199, 704, 886
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	550, 794
Bst2UI	CCWGG	2 cut(s)	330, 789
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	430, 860
BstDEI	CTNAG	1 cut(s)	835
BstF5I	GGATG	1 cut(s)	674
BstKTI	GATC	2 cut(s)	553, 797
BstMBI	GATC	2 cut(s)	550, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 500, 563
BstNI	CCWGG	2 cut(s)	330, 789
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	2 cut(s)	328, 787
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	6 cut(s)	449, 515, 593, 849, 852, 917
BtsCI	GGATG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	430, 860
Cfr10I	RCCGGY	1 cut(s)	653
CsiI	ACCWGGT	1 cut(s)	787
Csp6I	GTAC	1 cut(s)	651
CspAI	ACCGGT	1 cut(s)	653
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	1 cut(s)	859
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	1 cut(s)	835
DpnI	GATC	2 cut(s)	552, 796
DpnII	GATC	2 cut(s)	550, 794
DraIII	CACNNNGTG	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	888
EcoRII	CCWGG	2 cut(s)	328, 787
EcoT38I	GRGCYC	1 cut(s)	888
FaeI	CATG	1 cut(s)	862
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	1 cut(s)	858
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	438, 504, 607, 863, 866, 906
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	888
Fsp4HI	GCNGC	6 cut(s)	438, 504, 607, 863, 866, 906
FspBI	CTAG	1 cut(s)	603
GluI	GCNGC	6 cut(s)	438, 504, 607, 863, 866, 906
GsaI	CCCAGC	2 cut(s)	160, 596
HapII	CCGG	1 cut(s)	654
Hin1II	CATG	1 cut(s)	862
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	79, 121, 202, 824
HpaI	GTTAAC	1 cut(s)	709
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	4 cut(s)	225, 693, 708, 865
Hpy166II	GTNNAC	2 cut(s)	220, 709
Hpy188I	TCNGA	1 cut(s)	814
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	2 cut(s)	220, 709
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	5 cut(s)	494, 503, 609, 858, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 500, 563
HpyF3I	CTNAG	1 cut(s)	835
Hsp92II	CATG	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	550, 794
LmnI	GCTCC	2 cut(s)	76, 601
Lsp1109I	GCAGC	6 cut(s)	449, 515, 593, 849, 852, 917
LweI	GCATC	1 cut(s)	692
MabI	ACCWGGT	1 cut(s)	787
MaeI	CTAG	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	714, 894
MalI	GATC	2 cut(s)	552, 796
MboI	GATC	2 cut(s)	550, 794
MboII	GAAGA	2 cut(s)	8, 132
MhlI	GDGCHC	2 cut(s)	73, 888
MluCI	AATT	4 cut(s)	415, 610, 801, 910
MlyI	GAGTC	2 cut(s)	196, 833
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	93, 482, 611, 853
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	2 cut(s)	330, 789
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	330, 789
MwoI	GCNNNNNNNGC	3 cut(s)	434, 500, 563
NdeII	GATC	2 cut(s)	550, 794
NlaIII	CATG	1 cut(s)	862
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	2 cut(s)	714, 894
NspI	RCATGY	1 cut(s)	862
OliI	CACNNNNGTG	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	862
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	79, 121
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	6 cut(s)	439, 505, 608, 864, 867, 907
PleI	GAGTC	2 cut(s)	196, 832
PpsI	GAGTC	2 cut(s)	196, 832
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	328, 787
PspFI	CCCAGC	2 cut(s)	156, 592
PspGI	CCWGG	2 cut(s)	328, 787
PspN4I	GGNNCC	1 cut(s)	816
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	6 cut(s)	438, 504, 607, 863, 866, 906
Sau3AI	GATC	2 cut(s)	550, 794
SchI	GAGTC	2 cut(s)	196, 833
ScrFI	CCNGG	2 cut(s)	330, 789
SduI	GDGCHC	2 cut(s)	73, 888
SexAI	ACCWGGT	1 cut(s)	787
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	862
Sse9I	AATT	4 cut(s)	415, 610, 801, 910
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	328, 787
TaaI	ACNGT	1 cut(s)	500
TasI	AATT	4 cut(s)	415, 610, 801, 910
TfiI	GAWTC	2 cut(s)	79, 121
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	2 cut(s)	714, 894
TseI	GCWGC	6 cut(s)	437, 503, 606, 862, 865, 905
Tsp45I	GTSAC	2 cut(s)	714, 894
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	646
XceI	RCATGY	1 cut(s)	862
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.