Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005409.1

Orthogroup ID

OG0012588

Physical Location & Seq

Genomic Coordinates Forward (+)

83071 .. 84400

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005409.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgatttcaattgaaaagaaaaaggaacttaccatgctttcaatttcttcaggttcaagtgttccaaaaaatcctccattggaagcaatccaacaaagcaaaagacaagtgattcatgaaaaccatatacttttctcatctgcagtgtctactacccagcttgattcgattcctgtcgtaaatccaagtccaactgtaacgactcccacacttgtcttcccagcatccccaccaccaccaaccaccatgacaacccccaccacaaccccaacgactcccactacaatcccgccgactccccctatcccgccgactcccactacaaccccgacaactcccactacaaccccgacaactccctttacaactccgacaactccctccacaacccctgcatcatcaggtggtagtggtagttggtgtatagcaagccaatcagcttcagaaactgccctgcaggtagctcttgattatgcttgtggctatggaggtgcagactgttcaccaattcaaccaagtggaagctgttataacccaaacactctccgggatcacgcttcctatgccttcaataactattaccagaagaacccagctccaaccagctgtagttttggaggaacagcacaactgaccaccactgatccaagtagtggtagctgtcgctatccatcatccacagcatcaaccagctcgagtacaccaccttacggtccttaccagactccaccatcaacaccgacaagtatgacaacgccaccatccccgaccaccccgcttatagatactccaggtggatcaacaatttatggttcgccatcagagtcccccaacgccgccaactctatctcatcttgcatgcttctgctgtccaccacactcttggggtcacttcttgcagcaatttacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

304

Amino Acids

31.25

Weight (kDa)

5.48

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06330 FvH4_3g06330 FvH4_3g06330 FvH4_3g06330
malus_domestica	MD05G1291200.v1.1 MD10G1266900.v1.1
prunus_persica	Prupe.4G074400_v2.0.a1
pyrus_communis	pycom05g26770 pycom10g22310
rosa_chinensis	RchiOBHm_Chr5g0012981
rosa_laevigata	RLG00000031974
rosa_multiflora	Rmu_sc0005409.1_g000019 Rmu_sc0010837.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063600
rosa_rugosa	Rorug05G0005700
rosa_samantha	Rh5AG100100 Rh5BG096800 Rh5DG095700
rosa_wichuraiana	Rw5G008750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	4 cut(s)	290, 308, 776, 837
AclWI	GGATC	3 cut(s)	558, 638, 805
AcuI	CTGAAG	2 cut(s)	33, 426
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	2 cut(s)	653, 710
AgsI	TTSAA	6 cut(s)	9, 14, 42, 57, 512, 571
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	8 cut(s)	160, 440, 464, 525, 596, 606, 660, 693
AluI	AGCT	8 cut(s)	160, 440, 464, 525, 596, 606, 660, 693
AlwI	GGATC	3 cut(s)	558, 638, 805
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	694
ApeKI	GCWGC	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	911
BccI	CCATC	4 cut(s)	679, 739, 769, 826
BciT130I	CCWGG	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	548
BfmI	CTRYAG	3 cut(s)	141, 455, 607
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	837, 900
BlsI	GCNGC	2 cut(s)	838, 901
Bme1390I	CCNGG	2 cut(s)	548, 792
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	713
BmrFI	CCNGG	2 cut(s)	548, 792
BmsI	GCATC	3 cut(s)	233, 404, 692
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 710
BseBI	CCWGG	1 cut(s)	792
BseGI	GGATG	3 cut(s)	224, 674, 761
BseLI	CCNNNNNNNGG	2 cut(s)	653, 710
BseXI	GCAGC	1 cut(s)	911
BseYI	CCCAGC	3 cut(s)	156, 220, 592
BsgI	GTGCAG	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	2 cut(s)	653, 710
BsmFI	GGGAC	1 cut(s)	811
BsoBI	CYCGRG	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	550, 643, 797
BspACI	CCGC	4 cut(s)	290, 308, 776, 837
BspHI	TCATGA	1 cut(s)	115
BspMAI	CTGCAG	2 cut(s)	145, 459
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	3 cut(s)	558, 638, 805
BssMI	GATC	3 cut(s)	550, 643, 797
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	196, 500, 713
BstC8I	GCNNGC	2 cut(s)	430, 860
BstF5I	GGATG	3 cut(s)	224, 674, 761
BstKTI	GATC	3 cut(s)	553, 646, 800
BstMBI	GATC	3 cut(s)	550, 643, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	2 cut(s)	546, 790
BstSFI	CTRYAG	3 cut(s)	141, 455, 607
BstV1I	GCAGC	1 cut(s)	911
BstV2I	GAAGAC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	883
BtsCI	GGATG	3 cut(s)	224, 674, 761
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 639
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	430, 860
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	4 cut(s)	34, 116, 247, 859
CviQI	GTAC	1 cut(s)	699
DpnI	GATC	3 cut(s)	552, 645, 799
DpnII	GATC	3 cut(s)	550, 643, 797
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	33, 426
Eco88I	CYCGRG	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	790
FaeI	CATG	4 cut(s)	37, 119, 250, 862
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	4 cut(s)	33, 115, 246, 858
FauI	CCCGC	3 cut(s)	297, 315, 783
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	837, 900
FokI	GGATG	3 cut(s)	211, 661, 748
Fsp4HI	GCNGC	2 cut(s)	837, 900
GluI	GCNGC	2 cut(s)	837, 900
GsaI	CCCAGC	3 cut(s)	160, 224, 596
GsuI	CTGGAG	1 cut(s)	774
HapII	CCGG	1 cut(s)	547
Hin1II	CATG	4 cut(s)	37, 119, 250, 862
HinfI	GANTC	9 cut(s)	112, 164, 169, 202, 274, 295, 313, 724, 824
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	4 cut(s)	150, 503, 701, 873
Hpy188I	TCNGA	4 cut(s)	372, 445, 823, 914
Hpy188III	TCNNGA	2 cut(s)	116, 467
Hpy8I	GTNNAC	4 cut(s)	150, 503, 701, 873
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	3 cut(s)	196, 500, 713
HpyCH4V	TGCA	6 cut(s)	143, 395, 457, 494, 858, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	37, 119, 250, 862
Kzo9I	GATC	3 cut(s)	550, 643, 797
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	911
LweI	GCATC	3 cut(s)	233, 404, 692
MaeIII	GTNAC	2 cut(s)	196, 888
MalI	GATC	3 cut(s)	552, 645, 799
MboI	GATC	3 cut(s)	550, 643, 797
MboII	GAAGA	3 cut(s)	39, 208, 598
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	5 cut(s)	9, 42, 507, 804, 903
MlyI	GAGTC	6 cut(s)	196, 268, 289, 307, 718, 833
MmeI	TCCRAC	4 cut(s)	115, 215, 395, 623
MnlI	CCTC	4 cut(s)	84, 391, 482, 611
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	2 cut(s)	548, 792
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	3 cut(s)	550, 643, 797
NlaIII	CATG	4 cut(s)	37, 119, 250, 862
NmuCI	GTSAC	1 cut(s)	888
NspI	RCATGY	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	862
PaeR7I	CTCGAG	1 cut(s)	694
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	112, 164, 169
PflMI	CCANNNNNTGG	1 cut(s)	653
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	838, 901
PleI	GAGTC	6 cut(s)	196, 268, 289, 307, 718, 832
PpsI	GAGTC	6 cut(s)	196, 268, 289, 307, 718, 832
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	3 cut(s)	156, 220, 592
PspGI	CCWGG	1 cut(s)	790
PspPI	GGNCC	1 cut(s)	713
PspXI	VCTCGAGB	1 cut(s)	694
PstI	CTGCAG	2 cut(s)	145, 459
PstNI	CAGNNNCTG	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	606
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
SatI	GCNGC	2 cut(s)	837, 900
Sau3AI	GATC	3 cut(s)	550, 643, 797
Sau96I	GGNCC	1 cut(s)	713
SbfI	CCTGCAGG	1 cut(s)	459
SchI	GAGTC	6 cut(s)	196, 268, 289, 307, 718, 833
ScrFI	CCNGG	2 cut(s)	548, 792
SdaI	CCTGCAGG	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	233, 404, 692
SfcI	CTRYAG	3 cut(s)	141, 455, 607
Sfr274I	CTCGAG	1 cut(s)	694
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
SphI	GCATGC	1 cut(s)	862
Sse8387I	CCTGCAGG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	9, 42, 507, 804, 903
SsiI	CCGC	4 cut(s)	290, 308, 776, 837
StyD4I	CCNGG	2 cut(s)	546, 790
TaaI	ACNGT	3 cut(s)	196, 500, 713
TaqI	TCGA	2 cut(s)	167, 695
TasI	AATT	5 cut(s)	9, 42, 507, 804, 903
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	3 cut(s)	112, 164, 169
TscAI	CASTG	2 cut(s)	150, 646
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	2 cut(s)	104, 132
TspRI	CASTG	2 cut(s)	150, 646
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	713
XceI	RCATGY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XhoI	CTCGAG	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.