Rh5DG095700

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012588
Physical Location & Seq
Reverse (-)
8736011 .. 8736697
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG095700.1

Sequence Viewer

Length: 687 bp
ATGATTTCAATTGAAAAGAAAAAGGAACTTACCATGCTTTCAATTTCTTCAGGTTCAAGTGTTCCAAAAAATCCTCCATTGGAAGCAATCCAACAAAGCAAAAGACAAGTGATTCATGAAAACCATATACTTTTCTCATCTGCAGTGTCTACTACCCAGCTTGATTCGATTCCTGTCGTAAATCCAAGTCCAACTGTAACGACTCCCACACTTGTCTTCCCAGCATCCCCACCACCACCAACCACCATGACAACCCCCACCACAACCCCAACGACTCCCACTACAATCCCGCCGACTCCCCCTATCCCGCCGACTCCCACTACAACCCCGACAACTCCCACTACAACCCCGACAACTCCCTTTACAACTCCGACAACTCCCTCCACAACCCCTGCATCATCAGGTGGTAGTGGTAGTTGGTGTATAGCAAGCCAATCAGCTTCAGAAACTGCCCTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGCAGACTGTTCACCAATTCAACCAAGTGGAAGCTGTTATAACCCAAACACTCTCCGGGATCACGCTTCCTATGCCTTCAATAACTATTACCAGAAGAACCCAGCTCCAACCAGCTGTAGTTTTGGAGGAACAGCACAACTGACCACCACTGATCCAAGTAAGACATCTATGAACTTTAATCCAGCAATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

228

Amino Acids

23.75

Weight (kDa)

6.25

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 139 - 209 6.8e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 531, 685
Acc36I ACCTGC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 149
AciI CCGC 2 cut(s) 290, 308
AclWI GGATC 2 cut(s) 558, 638
AcuI CTGAAG 2 cut(s) 33, 426
AgsI TTSAA 6 cut(s) 9, 14, 42, 57, 512, 571
AluBI AGCT 6 cut(s) 160, 440, 464, 525, 596, 606
AluI AGCT 6 cut(s) 160, 440, 464, 525, 596, 606
AlwI GGATC 2 cut(s) 558, 638
AlwNI CAGNNNCTG 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 548
BfmI CTRYAG 3 cut(s) 141, 455, 607
BfuAI ACCTGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 233, 404
BpiI GAAGAC 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 548
BseGI GGATG 1 cut(s) 224
BseYI CCCAGC 3 cut(s) 156, 220, 592
BsgI GTGCAG 1 cut(s) 513
BsiSI CCGG 1 cut(s) 547
Bsp143I GATC 2 cut(s) 550, 643
BspACI CCGC 2 cut(s) 290, 308
BspHI TCATGA 1 cut(s) 115
BspMAI CTGCAG 2 cut(s) 145, 459
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 2 cut(s) 558, 638
BssMI GATC 2 cut(s) 550, 643
Bst4CI ACNGT 2 cut(s) 196, 500
BstC8I GCNNGC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 2 cut(s) 553, 646
BstMBI GATC 2 cut(s) 550, 643
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 546
BstSFI CTRYAG 3 cut(s) 141, 455, 607
BstV2I GAAGAC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 639
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 115
CviAII CATG 3 cut(s) 34, 116, 247
CviJI RGCY 8 cut(s) 160, 432, 440, 464, 483, 525, 596, 606
CviKI_1 RGCY 8 cut(s) 160, 432, 440, 464, 483, 525, 596, 606
DpnI GATC 2 cut(s) 552, 645
DpnII GATC 2 cut(s) 550, 643
Eco57I CTGAAG 2 cut(s) 33, 426
FaeI CATG 3 cut(s) 37, 119, 250
FatI CATG 3 cut(s) 33, 115, 246
FauI CCCGC 2 cut(s) 297, 315
FblI GTMKAC 1 cut(s) 149
FokI GGATG 1 cut(s) 211
GsaI CCCAGC 3 cut(s) 160, 224, 596
HapII CCGG 1 cut(s) 547
Hin1II CATG 3 cut(s) 37, 119, 250
HinfI GANTC 7 cut(s) 112, 164, 169, 202, 274, 295, 313
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 2 cut(s) 150, 503
Hpy188I TCNGA 2 cut(s) 372, 445
Hpy188III TCNNGA 2 cut(s) 116, 467
Hpy8I GTNNAC 2 cut(s) 150, 503
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 2 cut(s) 196, 500
HpyCH4V TGCA 4 cut(s) 143, 395, 457, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
Hsp92II CATG 3 cut(s) 37, 119, 250
Kzo9I GATC 2 cut(s) 550, 643
LmnI GCTCC 1 cut(s) 601
LweI GCATC 2 cut(s) 233, 404
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 552, 645
MboI GATC 2 cut(s) 550, 643
MboII GAAGA 3 cut(s) 39, 208, 598
MfeI CAATTG 1 cut(s) 9
MluCI AATT 3 cut(s) 9, 42, 507
MlyI GAGTC 4 cut(s) 196, 268, 289, 307
MmeI TCCRAC 4 cut(s) 115, 215, 395, 623
MnlI CCTC 4 cut(s) 84, 391, 482, 611
MseI TTAA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 1 cut(s) 548
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 563
NciI CCSGG 1 cut(s) 548
NdeII GATC 2 cut(s) 550, 643
NlaIII CATG 3 cut(s) 37, 119, 250
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 3 cut(s) 112, 164, 169
PfoI TCCNGGA 1 cut(s) 546
PleI GAGTC 4 cut(s) 196, 268, 289, 307
PpsI GAGTC 4 cut(s) 196, 268, 289, 307
PsiI TTATAA 2 cut(s) 531, 685
PspFI CCCAGC 3 cut(s) 156, 220, 592
PstI CTGCAG 2 cut(s) 145, 459
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 606
SaqAI TTAA 1 cut(s) 669
Sau3AI GATC 2 cut(s) 550, 643
SbfI CCTGCAGG 1 cut(s) 459
SchI GAGTC 4 cut(s) 196, 268, 289, 307
ScrFI CCNGG 1 cut(s) 548
SdaI CCTGCAGG 1 cut(s) 459
SfaNI GCATC 2 cut(s) 233, 404
SfcI CTRYAG 3 cut(s) 141, 455, 607
Sse8387I CCTGCAGG 1 cut(s) 459
Sse9I AATT 3 cut(s) 9, 42, 507
SsiI CCGC 2 cut(s) 290, 308
SspI AATATT 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 196, 500
TaqI TCGA 1 cut(s) 167
TasI AATT 3 cut(s) 9, 42, 507
TfiI GAWTC 3 cut(s) 112, 164, 169
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 2 cut(s) 150, 646
TspDTI ATGAA 3 cut(s) 104, 132, 677
TspRI CASTG 2 cut(s) 150, 646
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.