FvH4_3g09510

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008716
Physical Location & Seq
Forward (+)
5538508 .. 5545960
7453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09510.t3

Sequence Viewer

Length: 3279 bp
ATGGGCAATCTGGCGCACCTCGAGAAAATGGGCAGAGAACTTAAGTGCCCCATTTGTTTGAGTCTATTTAGTTCTGCTGTTTCGCTGAATTGCAACCATGTCTTCTGCAATGCTTGTATTGTGAAGTCAATGAAATCGGGCTCCAATTGTCCTGTTTGTAAGATCCCATATCAGCGGAGAGAGGTTCGCCCTGCTCCTCATATGGACAATTTGGTTGGTATTTACAAAAACATGGAGGATGCTTCGGGTACTAACATATTTATGACTCAAAGTGCACCATCGACTAAATCAGCAGATGGAAAGCAGCAAGTTGAAGATGAGAATCCTGATGAGCAAGATCCTCCTAGACTTTCTCAGAATAGAGCTGGGAACCAGAAAACCGTCAGAGGGAAAAGATCAGGGAAAGCTAAATCCAACCTAAAGAACTCCAATTCTGTTTCAGTTAAACCTTCATTTCCAACCAAGAAAAGGGTTCAGGTTCCACAATCTCTTTCAGAAACCCCAACACGGCCTAAACAGTTACTGGGTGATTTGATTGAAGAAAAGTCAAAGCAGGATTCAACAACTCTGAAGGAGAAGCCTGTTTTTAATGAGAGGGGAGAACCGGTGCTTTCACCTTTCTTTTGGTTGAGTGATAAAGATGCTGAAAACTTGAGCGAGCCTTCTACCGGAGATCAGCTTGATGATATTCCATCTCCAAATGTTCCTACTTTCAGTGATATCAAGGACTCGGATGATGAAGACTGTACAAGATTGAGCCCACTGGGCGAAGTGCAGGGGAAATCTTCCAATGCTGCGGACATTTTTGATAGTGAAATGTTTGAATGGACGCAAATGCCATGCTCCCCTGAGCTCTTTGCAAGTCCTTCTAAGATGCAGGTTGCAGATAACGATCAAATTGATAGAATTCAAGTGAAGGAACTAAAAGAAGCCTCACAAAACAAGAAAATAGCTGAACAAGTCACTGCTGAAAAAGCAAGGTCCAGAAATTCTAGACAGAATAGTGGAAACTTGATCTTGCAGCCTTATCTTCCACATGATAATACTGAAGATGCTAATCATCAACTTTTTGGCAATCAATCTAACAAGAGAGGAAGACAAGCAAGAAACATAACTAAAAGTAAGTGTGCTACAAGTCATATGGACCTGGTTGAGGACAGAAATGCTAATTTTAAGGGTTCTGAAGACTCTTATCAAGAACACGGCTGCAAGAATAGGGACAGTTATGTGGCCAAGGCTGGCAAAAGGAGTAAGAAAGCTCATCCATCTCGGCTCGCAACTAAACCAACATCTGAAAGTGTTTGCACCCTCTCTACTGGGGCAGAAAGGCAGAATGAAGGCTGTGCTAAGAAGGGGTTAACTGAATTACCCCCCTCACTAGAAAAGGATGACGGCAATGATGAAGCTTTTGCCCAGGGGAAGGCTAAGAAAATCTGTACAAAGATAAATGCCAAGAACCCAATGCGTCGCTCAGCGAGGTCAAAGAAACAAAAGGTGGTCTCTATGCCTAACATGCTTGAGGAGGTATCAGGAATCGAGAAACAAGCGAATACAAATGTTACAAATGAGCACTCCCATGTAAATGTCCCTACAGATGAGAACAGGAAAGTCTCTGATGTCAAGAATAAATCCATGAAACTTGCTAGAGAAGCCAAGTCATGTGATCATGAATTGAAATTCAACAAAAAGGCCCAAGTTTCGTCCGGTGATGACTCAGAGGATAAGGAGGTATCAGAGATTAAGAAGCAAGCAAATAGGAGTGCTCCAACTGAGGTGTCCATAATTCTCCCTACAAATGTTAACAGGGAACTCTCAGAAGTTCGAAAACGAGCTAGAGAAGCCAAGTCATGTAATAGAGAATTGAAAATTACCAAAAAGGTGAAAGTTTCTTTTGATGGCAGTTCAAAAAATGAGGCTGTTATTGAGATTGGAGAGGGTCATCATAATGTTAATGAAAACGGTGACCAACCCACCGAGAAGAGCAAAGGCGATTCGAATAGTAGACTTTTTACTGACGGATCATCAATGCAGAAGCTTCCCACATTGAGGAATGATGTGGCTTTGAGGAGGTGTGATGCCATTGCTAGTAAAATTCAATGTGCCTTTTGTCTTTCATCAGAAGAATCAGAGGCATCAGGAGAGATAGTTCACTACTATAATGGCAAGCCTGTTGCTGCAGATCACAATGGAGGGTCCAAGGTTATACATTCACACAGGAACTGCACTGAATGGGCTCCCAACGTATATTTTGAAGATGATATTGCTATGAATCTTGAAGCTGAGTTAACTAGAAGTCGTAGAATTAAATGTTGTTGCTGTGGAATTAAAGGAGCATCTCTTGGGTGTTTTGAGAAGAGTTGTCGCAAGAGCTTTCATGTCAGCTGTGCAAAAATGACTCCTGAATGTCGATGGGATACAGATAATTTTGTTATGTTATGCCCCATTCATTCCTCTTCTAAGTTGCCAAATGAAAGTTCTGAATCTGAAGCAAGGAGGAAGAAGAGCACCCCTAGAAAACAACCTGGTGATGACTGTAAAAAAGTTCATGTTAAACAAGACAGCAACACCTCTCAGGATCTGAAATTTTGTGGATCATCCAAGAAGTTGGTTCTCTGTTGTTCAACTCTCACAAGTGCAGAGAGGGAATATGTAGCGGAATTTGAAAGATTATCTGGACTTACAGTCTTGAAGAAGTGGGACTCTACTATCACACATGTTATTGCACCAATAGATAAAAATGGAGCATGTAGAAGAACCCTCAAAGTATTGATGGGAATCTTGGAGGGGAAGTGGATACTGAGCATGGGATGGATTAAAGCTTGCATGGAAGCCATGAAACTAGTGAATGAGGAGCCTTATGAAATTAGCATTGACATTTATGGAATCAGGGATGGCCCTCGACTTGGTAGACTAAGACTACAAAACAAGGAACCAAAACTTTTTGATGGGCTTAAGTTTTACTTCATGGGAGATTATGTACCTTCGTACAAGGGGTATCTACAAGACCTTGTAATAGCTGCTGGAGGAACTGTTTTGCACAGAAAGCCTGTTCCAGAGAGTCAGAAAGGCTCATCTGGAAGTCCCCTCGAATGTCGAACCTTCATCATTTATAGTCTTGAGTTACCTGATCAATGTCATCCTAGCAAGAAGGGTACGATTTTCAATCAAAGACTGGCTGATGCAAAGTCTGTGGCAAGTTCTGCTGGAGCCAATGTAGCAAGCAATTCATGGATTTTGAACTCCATTGCTGCCTGCAAGCTACAACGTCTTTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006355 GO:0006357 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010638 GO:0010639 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045893 GO:0045922 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071944 GO:0080090 GO:0090068 GO:0090304 GO:0104004 GO:0140096 GO:1901360 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1905269 GO:1990234 GO:2000112 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 DYW_deaminase PPR zf-C3HC4_2 zf-HC5HC2H zf-RING_2

Protein Analysis

1093

Amino Acids

121.17

Weight (kDa)

8.85

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_6 PF14835 4 - 69 2.6e-06 zf-RING of BARD1-type protein
zf-C3HC4_3 PF13920 13 - 59 6.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 15 - 53 2.2e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 15 - 54 1.2e-07 Ring finger domain
zf-C3HC4 PF00097 16 - 53 4.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 16 - 51 3.7e-07 RING-type zinc-finger
zf-C3HC4_4 PF15227 16 - 53 1.8e-06 zinc finger of C3HC4-type, RING
zf-HC5HC2H_2 PF13832 741 - 803 9.2e-06 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 743 - 822 4.7e-09 PHD-like zinc-binding domain
BRCT PF00533 873 - 947 5.4e-09 BRCA1 C Terminus (BRCT) domain
BRCT_2 PF16589 984 - 1094 1e-06 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 868
AccI GTMKAC 2 cut(s) 2002, 2908
AciI CCGC 3 cut(s) 175, 797, 2654
AclWI GGATC 5 cut(s) 157, 332, 2026, 2583, 2599
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 6 cut(s) 906, 988, 1676, 2091, 2582, 2657
AcuI CTGAAG 4 cut(s) 590, 1068, 1203, 2505
AfaI GTAC 6 cut(s) 250, 748, 1438, 2979, 2987, 3154
AfiI CCNNNNNNNGG 8 cut(s) 387, 468, 507, 668, 1153, 1420, 2046, 2903
AflII CTTAAG 2 cut(s) 41, 2951
AflIII ACRYGT 1 cut(s) 2713
AgeI ACCGGT 1 cut(s) 604
AhdI GACNNNNNGTC 1 cut(s) 2681
AhlI ACTAGT 1 cut(s) 2839
AjnI CCWGG 3 cut(s) 1146, 1413, 2521
AjuI GAANNNNNNNTTGG 2 cut(s) 2458, 2490
AloI GAACNNNNNNTCC 2 cut(s) 2130, 2162
Alw21I GWGCWC 5 cut(s) 277, 855, 1572, 1765, 2507
Alw26I GTCTC 2 cut(s) 1504, 1615
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 5 cut(s) 157, 332, 2026, 2583, 2599
AlwNI CAGNNNCTG 3 cut(s) 523, 2220, 2578
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 4 cut(s) 509, 1230, 1689, 2893
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 7 cut(s) 304, 794, 1021, 1206, 2174, 3017, 3248
ApoI RAATTY 6 cut(s) 906, 988, 1676, 2091, 2582, 2657
AsiGI ACCGGT 1 cut(s) 604
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 5 cut(s) 981, 1144, 1690, 2193, 2894
AsuHPI GGTGA 6 cut(s) 539, 606, 1718, 1891, 1973, 2537
AsuII TTCGAA 2 cut(s) 1822, 1994
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 3 cut(s) 981, 1144, 2193
BaeGI GKGCMC 2 cut(s) 50, 277
BalI TGGCCA 1 cut(s) 1232
BanII GRGCYC 4 cut(s) 143, 761, 855, 2236
BbsI GAAGAC 4 cut(s) 94, 747, 1102, 1191
Bbv12I GWGCWC 5 cut(s) 277, 855, 1572, 1765, 2507
BbvI GCAGC 7 cut(s) 316, 781, 1033, 1193, 2161, 3004, 3235
BceAI ACGGC 3 cut(s) 524, 1219, 1408
BciT130I CCWGG 3 cut(s) 1148, 1415, 2523
BciVI GTATCC 2 cut(s) 2407, 2787
BclI TGATCA 2 cut(s) 1663, 3127
BcoDI GTCTC 2 cut(s) 1504, 1615
BcuI ACTAGT 1 cut(s) 2839
BfmI CTRYAG 2 cut(s) 1590, 2175
BfrI CTTAAG 2 cut(s) 41, 2951
BfuAI ACCTGC 1 cut(s) 868
BfuI GTATCC 2 cut(s) 2407, 2787
BglI GCCNNNNNGGC 1 cut(s) 765
BisI GCNGC 7 cut(s) 305, 795, 1022, 1207, 2175, 3018, 3249
BlpI GCTNAGC 1 cut(s) 1471
BlsI GCNGC 7 cut(s) 306, 796, 1023, 1208, 2176, 3019, 3250
Bme1390I CCNGG 3 cut(s) 1148, 1415, 2523
Bme18I GGWCC 3 cut(s) 981, 1144, 2193
BmeRI GACNNNNNGTC 1 cut(s) 2681
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 5 cut(s) 981, 1144, 1690, 2193, 2894
BmiI GGNNCC 8 cut(s) 142, 371, 480, 2194, 2235, 2853, 2931, 3208
BmrFI CCNGG 3 cut(s) 1148, 1415, 2523
BmrI ACTGGG 3 cut(s) 533, 773, 1326
BmsI GCATC 8 cut(s) 229, 631, 864, 1042, 2065, 2141, 2342, 3169
BmuI ACTGGG 3 cut(s) 533, 773, 1326
BpiI GAAGAC 4 cut(s) 94, 747, 1102, 1191
BpmI CTGGAG 2 cut(s) 3042, 3225
Bpu10I CCTNAGC 1 cut(s) 849
Bpu1102I GCTNAGC 1 cut(s) 1471
Bpu14I TTCGAA 2 cut(s) 1822, 1994
BpuEI CTTGAG 3 cut(s) 673, 1538, 3137
BsaBI GATNNNNATC 4 cut(s) 321, 891, 1056, 2774
BsaI GGTCTC 1 cut(s) 1504
BsaJI CCNNGG 4 cut(s) 1233, 1413, 1414, 2196
BsaWI WCCGGW 3 cut(s) 604, 668, 1703
Bsc4I CCNNNNNNNGG 8 cut(s) 387, 468, 507, 668, 1153, 1420, 2046, 2903
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 4 cut(s) 528, 768, 1321, 3177
Bse3DI GCAATG 4 cut(s) 115, 1402, 2079, 3243
Bse8I GATNNNNATC 4 cut(s) 321, 891, 1056, 2774
BseBI CCWGG 3 cut(s) 1148, 1415, 2523
BseDI CCNNGG 4 cut(s) 1233, 1413, 1414, 2196
BseGI GGATG 8 cut(s) 244, 739, 1261, 1393, 2594, 2813, 2896, 3136
BseJI GATNNNNATC 4 cut(s) 321, 891, 1056, 2774
BseLI CCNNNNNNNGG 8 cut(s) 387, 468, 507, 668, 1153, 1420, 2046, 2903
BseMI GCAATG 4 cut(s) 115, 1402, 2079, 3243
BseMII CTCAG 9 cut(s) 368, 840, 1485, 1728, 1761, 1827, 2271, 2585, 2789
BseNI ACTGG 4 cut(s) 528, 768, 1321, 3177
BseRI GAGGAG 4 cut(s) 186, 1535, 2080, 2864
BseSI GKGCMC 2 cut(s) 50, 277
BseXI GCAGC 7 cut(s) 316, 781, 1033, 1193, 2161, 3004, 3235
BseYI CCCAGC 1 cut(s) 365
BsgI GTGCAG 3 cut(s) 794, 2206, 2655
BshFI GGCC 4 cut(s) 511, 1232, 1691, 2895
BshTI ACCGGT 1 cut(s) 604
BsiHKAI GWGCWC 5 cut(s) 277, 855, 1572, 1765, 2507
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 3 cut(s) 605, 669, 1704
BslFI GGGAC 4 cut(s) 1232, 1571, 2711, 3066
BslI CCNNNNNNNGG 8 cut(s) 387, 468, 507, 668, 1153, 1420, 2046, 2903
BsmAI GTCTC 2 cut(s) 1504, 1615
BsmFI GGGAC 4 cut(s) 1232, 1571, 2711, 3066
BsnI GGCC 4 cut(s) 511, 1232, 1691, 2895
Bso31I GGTCTC 1 cut(s) 1504
BsoBI CYCGRG 1 cut(s) 20
Bsp119I TTCGAA 2 cut(s) 1822, 1994
Bsp1286I GDGCHC 9 cut(s) 50, 143, 277, 761, 855, 1572, 1765, 2236, 2507
Bsp1407I TGTACA 2 cut(s) 746, 1436
Bsp1720I GCTNAGC 1 cut(s) 1471
BspACI CCGC 3 cut(s) 175, 797, 2654
BspANI GGCC 4 cut(s) 511, 1232, 1691, 2895
BspCNI CTCAG 9 cut(s) 367, 841, 1484, 1727, 1762, 1826, 2272, 2584, 2790
BspHI TCATGA 1 cut(s) 1666
BspLI GGNNCC 8 cut(s) 142, 371, 480, 2194, 2235, 2853, 2931, 3208
BspMAI CTGCAG 1 cut(s) 2179
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 5 cut(s) 157, 332, 2026, 2583, 2599
BspQI GCTCTTC 2 cut(s) 1973, 2495
BspT104I TTCGAA 2 cut(s) 1822, 1994
BspTI CTTAAG 2 cut(s) 41, 2951
BspTNI GGTCTC 1 cut(s) 1504
BsrDI GCAATG 4 cut(s) 115, 1402, 2079, 3243
BsrFI RCCGGY 1 cut(s) 604
BsrGI TGTACA 2 cut(s) 746, 1436
BsrI ACTGG 4 cut(s) 528, 768, 1321, 3177
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 1233, 1413, 1414, 2196
BssT1I CCWWGG 2 cut(s) 1233, 2196
Bst2UI CCWGG 3 cut(s) 1148, 1415, 2523
Bst4CI ACNGT 8 cut(s) 382, 519, 746, 1223, 1961, 2534, 2683, 3031
Bst6I CTCTTC 4 cut(s) 1973, 2348, 2458, 2495
BstAFI CTTAAG 2 cut(s) 41, 2951
BstAPI GCANNNNNTGC 1 cut(s) 3200
BstAUI TGTACA 2 cut(s) 746, 1436
BstBI TTCGAA 2 cut(s) 1822, 1994
BstC8I GCNNGC 9 cut(s) 659, 1240, 1275, 1749, 2165, 2821, 3220, 3253, 3257
BstEII GGTNACC 1 cut(s) 1961
BstENI CCTNNNNNAGG 1 cut(s) 1151
BstF5I GGATG 8 cut(s) 244, 739, 1261, 1393, 2594, 2813, 2896, 3136
BstHHI GCGC 1 cut(s) 16
BstMAI GTCTC 2 cut(s) 1504, 1615
BstMWI GCNNNNNNNGC 8 cut(s) 765, 974, 1513, 1649, 1838, 3043, 3200, 3215
BstNI CCWGG 3 cut(s) 1148, 1415, 2523
BstNSI RCATGY 3 cut(s) 1516, 2717, 2748
BstPI GGTNACC 1 cut(s) 1961
BstSCI CCNGG 3 cut(s) 1146, 1413, 2521
BstSFI CTRYAG 2 cut(s) 1590, 2175
BstSLI GKGCMC 2 cut(s) 50, 277
BstV1I GCAGC 7 cut(s) 316, 781, 1033, 1193, 2161, 3004, 3235
BstV2I GAAGAC 4 cut(s) 94, 747, 1102, 1191
BstX2I RGATCY 3 cut(s) 162, 337, 2575
BstXI CCANNNNNNTGG 1 cut(s) 2605
BstYI RGATCY 3 cut(s) 162, 337, 2575
BsuI GTATCC 2 cut(s) 2407, 2787
BsuRI GGCC 4 cut(s) 511, 1232, 1691, 2895
BtsCI GGATG 8 cut(s) 244, 739, 1261, 1393, 2594, 2813, 2896, 3136
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 4 cut(s) 721, 761, 963, 2223
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 9 cut(s) 659, 1240, 1275, 1749, 2165, 2821, 3220, 3253, 3257
CaiI CAGNNNCTG 3 cut(s) 523, 2220, 2578
CciI TCATGA 1 cut(s) 1666
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 5 cut(s) 981, 1144, 1690, 2193, 2894
CseI GACGC 2 cut(s) 838, 1454
CsiI ACCWGGT 2 cut(s) 1146, 2521
Csp6I GTAC 6 cut(s) 249, 747, 1437, 2978, 2986, 3153
CspAI ACCGGT 1 cut(s) 604
CspCI CAANNNNNGTGG 2 cut(s) 3171, 3206
CviQI GTAC 6 cut(s) 249, 747, 1437, 2978, 2986, 3153
DriI GACNNNNNGTC 1 cut(s) 2681
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 4 cut(s) 1973, 2348, 2458, 2495
Eam1105I GACNNNNNGTC 1 cut(s) 2681
EarI CTCTTC 4 cut(s) 1973, 2348, 2458, 2495
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 2 cut(s) 1233, 2196
Eco24I GRGCYC 4 cut(s) 143, 761, 855, 2236
Eco31I GGTCTC 1 cut(s) 1504
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 3 cut(s) 981, 1144, 2193
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 4 cut(s) 590, 1068, 1203, 2505
Eco88I CYCGRG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 1961
EcoICRI GAGCTC 1 cut(s) 853
EcoNI CCTNNNNNAGG 1 cut(s) 1151
EcoO65I GGTNACC 1 cut(s) 1961
EcoRI GAATTC 1 cut(s) 906
EcoRII CCWGG 3 cut(s) 1146, 1413, 2521
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 2 cut(s) 1233, 2196
EcoT38I GRGCYC 4 cut(s) 143, 761, 855, 2236
ErhI CCWWGG 2 cut(s) 1233, 2196
FalI AAGNNNNNCTT 2 cut(s) 2945, 2977
FaqI GGGAC 4 cut(s) 1232, 1571, 2711, 3066
FauNDI CATATG 2 cut(s) 201, 1140
FbaI TGATCA 2 cut(s) 1663, 3127
FblI GTMKAC 2 cut(s) 2002, 2908
Fnu4HI GCNGC 7 cut(s) 305, 795, 1022, 1207, 2175, 3018, 3249
FokI GGATG 8 cut(s) 251, 746, 1248, 1400, 2581, 2820, 2903, 3123
FriOI GRGCYC 4 cut(s) 143, 761, 855, 2236
Fsp4HI GCNGC 7 cut(s) 305, 795, 1022, 1207, 2175, 3018, 3249
GlaI GCGC 1 cut(s) 15
GluI GCNGC 7 cut(s) 305, 795, 1022, 1207, 2175, 3018, 3249
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 3042, 3225
HaeIII GGCC 4 cut(s) 511, 1232, 1691, 2895
HapII CCGG 3 cut(s) 605, 669, 1704
HgaI GACGC 2 cut(s) 838, 1454
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 3 cut(s) 1359, 1801, 2286
HindII GTYRAC 3 cut(s) 1359, 1801, 2286
HindIII AAGCTT 3 cut(s) 1404, 2033, 2817
HpaI GTTAAC 3 cut(s) 1359, 1801, 2286
HpaII CCGG 3 cut(s) 605, 669, 1704
HphI GGTGA 6 cut(s) 539, 606, 1718, 1891, 1973, 2537
Hpy166II GTNNAC 7 cut(s) 275, 1359, 1801, 2003, 2149, 2286, 2909
Hpy8I GTNNAC 7 cut(s) 275, 1359, 1801, 2003, 2149, 2286, 2909
Hpy99I CGWCG 1 cut(s) 1470
HpyCH4III ACNGT 8 cut(s) 382, 519, 746, 1223, 1961, 2534, 2683, 3031
HpyCH4IV ACGT 2 cut(s) 2241, 3265
HpyF10VI GCNNNNNNNGC 8 cut(s) 765, 974, 1513, 1649, 1838, 3043, 3200, 3215
HpySE526I ACGT 2 cut(s) 2241, 3265
HspAI GCGC 1 cut(s) 14
Ksp22I TGATCA 2 cut(s) 1663, 3127
KspAI GTTAAC 3 cut(s) 1359, 1801, 2286
LguI GCTCTTC 2 cut(s) 1973, 2495
LmnI GCTCC 9 cut(s) 146, 199, 848, 1768, 2239, 2330, 2741, 2851, 3206
Lsp1109I GCAGC 7 cut(s) 316, 781, 1033, 1193, 2161, 3004, 3235
LweI GCATC 8 cut(s) 229, 631, 864, 1042, 2065, 2141, 2342, 3169
MabI ACCWGGT 2 cut(s) 1146, 2521
MaeII ACGT 2 cut(s) 2241, 3265
MaeIII GTNAC 5 cut(s) 519, 961, 1558, 1961, 3120
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 3 cut(s) 162, 337, 2575
MhlI GDGCHC 9 cut(s) 50, 143, 277, 761, 855, 1572, 1765, 2236, 2507
MlsI TGGCCA 1 cut(s) 1232
MluNI TGGCCA 1 cut(s) 1232
MlyI GAGTC 8 cut(s) 70, 259, 722, 1181, 1706, 2389, 2693, 3067
MmeI TCCRAC 3 cut(s) 438, 482, 1790
Mox20I TGGCCA 1 cut(s) 1232
MscI TGGCCA 1 cut(s) 1232
MslI CAYNNNNRTG 4 cut(s) 260, 1575, 1581, 1944
Msp20I TGGCCA 1 cut(s) 1232
MspA1I CMGCKG 2 cut(s) 175, 2382
MspCI CTTAAG 2 cut(s) 41, 2951
MspI CCGG 3 cut(s) 605, 669, 1704
MspR9I CCNGG 3 cut(s) 1148, 1415, 2523
MunI CAATTG 1 cut(s) 145
MvaI CCWGG 3 cut(s) 1148, 1415, 2523
MwoI GCNNNNNNNGC 8 cut(s) 765, 974, 1513, 1649, 1838, 3043, 3200, 3215
NdeI CATATG 2 cut(s) 201, 1140
NlaIV GGNNCC 8 cut(s) 142, 371, 480, 2194, 2235, 2853, 2931, 3208
NmeAIII GCCGAG 1 cut(s) 1249
NmuCI GTSAC 2 cut(s) 961, 1961
NspI RCATGY 3 cut(s) 1516, 2717, 2748
NspV TTCGAA 2 cut(s) 1822, 1994
PaeR7I CTCGAG 1 cut(s) 20
PagI TCATGA 1 cut(s) 1666
PasI CCCWGGG 1 cut(s) 1414
PciI ACATGT 1 cut(s) 2713
PciSI GCTCTTC 2 cut(s) 1973, 2495
PfeI GAWTC 9 cut(s) 322, 557, 1533, 1991, 2123, 2269, 2480, 2775, 2883
PinAI ACCGGT 1 cut(s) 604
PkrI GCNGC 7 cut(s) 306, 796, 1023, 1208, 2176, 3019, 3250
PleI GAGTC 8 cut(s) 69, 259, 722, 1181, 1706, 2389, 2693, 3066
PpsI GAGTC 8 cut(s) 69, 259, 722, 1181, 1706, 2389, 2693, 3066
PscI ACATGT 1 cut(s) 2713
Psp124BI GAGCTC 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 1146, 1413, 2521
PspEI GGTNACC 1 cut(s) 1961
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 3 cut(s) 1146, 1413, 2521
PspN4I GGNNCC 8 cut(s) 142, 371, 480, 2194, 2235, 2853, 2931, 3208
PspPI GGNCC 5 cut(s) 981, 1144, 1690, 2193, 2894
PstI CTGCAG 1 cut(s) 2179
PstNI CAGNNNCTG 3 cut(s) 523, 2220, 2578
PsuI RGATCY 3 cut(s) 162, 337, 2575
PvuII CAGCTG 1 cut(s) 2382
RsaI GTAC 6 cut(s) 250, 748, 1438, 2979, 2987, 3154
RsaNI GTAC 6 cut(s) 249, 747, 1437, 2978, 2986, 3153
RseI CAYNNNNRTG 4 cut(s) 260, 1575, 1581, 1944
SacI GAGCTC 1 cut(s) 855
SapI GCTCTTC 2 cut(s) 1973, 2495
SatI GCNGC 7 cut(s) 305, 795, 1022, 1207, 2175, 3018, 3249
Sau96I GGNCC 5 cut(s) 981, 1144, 1690, 2193, 2894
SchI GAGTC 8 cut(s) 70, 259, 722, 1181, 1706, 2389, 2693, 3067
ScrFI CCNGG 3 cut(s) 1148, 1415, 2523
SduI GDGCHC 9 cut(s) 50, 143, 277, 761, 855, 1572, 1765, 2236, 2507
SexAI ACCWGGT 2 cut(s) 1146, 2521
SfaNI GCATC 8 cut(s) 229, 631, 864, 1042, 2065, 2141, 2342, 3169
SfcI CTRYAG 2 cut(s) 1590, 2175
Sfr274I CTCGAG 1 cut(s) 20
SfuI TTCGAA 2 cut(s) 1822, 1994
SinI GGWCC 3 cut(s) 981, 1144, 2193
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 4 cut(s) 260, 1575, 1581, 1944
SmlI CTYRAG 6 cut(s) 20, 41, 652, 1517, 2951, 3116
SmoI CTYRAG 6 cut(s) 20, 41, 652, 1517, 2951, 3116
SpeI ACTAGT 1 cut(s) 2839
SsiI CCGC 3 cut(s) 175, 797, 2654
SstI GAGCTC 1 cut(s) 855
StyD4I CCNGG 3 cut(s) 1146, 1413, 2521
StyI CCWWGG 2 cut(s) 1233, 2196
TaaI ACNGT 8 cut(s) 382, 519, 746, 1223, 1961, 2534, 2683, 3031
TaiI ACGT 2 cut(s) 2244, 3268
TaqI TCGA 9 cut(s) 21, 281, 1536, 1822, 1994, 2407, 2899, 3087, 3094
TatI WGTACW 2 cut(s) 746, 1436
TfiI GAWTC 9 cut(s) 322, 557, 1533, 1991, 2123, 2269, 2480, 2775, 2883
TscAI CASTG 4 cut(s) 721, 768, 970, 2230
TseFI GTSAC 2 cut(s) 961, 1961
TseI GCWGC 7 cut(s) 304, 794, 1021, 1206, 2174, 3017, 3248
Tsp45I GTSAC 2 cut(s) 961, 1961
TspGWI ACGGA 1 cut(s) 2031
TspRI CASTG 4 cut(s) 721, 768, 970, 2230
Vha464I CTTAAG 2 cut(s) 41, 2951
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 3 cut(s) 981, 1144, 2193
XagI CCTNNNNNAGG 1 cut(s) 1151
XapI RAATTY 6 cut(s) 906, 988, 1676, 2091, 2582, 2657
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 3 cut(s) 1516, 2717, 2748
XhoI CTCGAG 1 cut(s) 20
XmiI GTMKAC 2 cut(s) 2002, 2908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.