Rh5AG118600

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008716
Physical Location & Seq
Forward (+)
11048244 .. 11054356
6113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG118600.1

Sequence Viewer

Length: 3111 bp
ATGGGCAATCTGGCGCACCTCGAGAAAATGGGCAGAGAACTCAAATGCCCAATATGTTTGAGTCTGTTTAGTTCAGCCGTTTCGCTGAATTGCAATCATGTCTTCTGCAACTCTTGTATTGTGAAATCAATGAAATCGGGTTCCAATTGCCCTGTTTGTAAGATCCCATATCAGCGGAGAGAGGTACGCCCTGCTCCTCATATGGACAATTTGGTTAGTATTTACAAAAGCATGGAGGATGCTTCAGGTATTAACATGTTTATGACTCAAAGTGTGCCGTCAGCTAAATCATCAGATGGAAAGCAGCAAGCTGAAGATGAGAACCCTGATGATCAAGATCCTCCTAAACTTTCTCAGAATAGAGCTGGGAACGGGAGAACCGTAAGAGGGAAAAGATCATGGAAAACTAAATCCAATCTAAAGAACTCTGAATCTGTTTCAGTTAAGCCTTCATTTCCAACCAAGAAAAGGGTTCAGGTTCCACAATGTCCTCCTTCAGAAACCCCTACACGGCCTAAACAGTTACCGGGTGGTTTTATTGATGAAAAGTCAAAGGAGGAGTCTACAACACTAAAGGAGAAGCCTGTTTTAAATGAAAAGGGAGAACCGGTGCTTTCACCTTTCTTTTGGTTGAGTGACAAAGATGCTGAAAATTTGAGTCAGCCTTCTAGTGGTGATCAGCTTAATGATATTCCATCTCCCAATGTTCCTACTTTCAGTGATATCAAGGAGTCAGATGATGAAGACTGTTCTAGATTGAGCCCACTGGGCAAAGTGCAGGGGAAATCTTCCAATGTTGCTGATTTTTTTGATAGTGAAATGTTCGAATGGACGCAAAGGCCGTGCTCCCCTGAGCTCTTTGCAAGTCCTTCTAAGATGCAGGTTGTGGATAGTGATCAAATTGATAGAATTCAAGTGAAGGAACTAAAAGAAGCTTTACTAAACAAGAAAATAGGTGAACAAGTCACTGCTGAAAAAGAAAGGTCCAGAAATTCTAGACAGAGTAGTGGAAACTTAATCTTGCTGCCTGATCTTCCACATGATAAAACTGAAGATGCTAATCTTCAATTTCTTTGCAAACCATCTAACAAGAAAGGCAGACAAGCAAGAAAAATAGCTAAAAGAAAGTGTGCTACAAGTCATATGGACCTGGTTGAGAATAGTAGTGCTAATTTGAAGGGTTCTGAAGATTTTTATCAAGAACACGGCTGCAAGAATAGTGACAGTTCTATGGCCAAGGCTGGCAAAAGGAATAAGAAAGCTCATCCGTCTCGGCTCGCAACTAAGCCAACATGTGAAAGTGTTTGCATCCTCTCTATTGGTGCTGAAAGGCAGAATGAAGGCAGTGCTGAGAAGGGGTTAACTGAATTACCTACTTCACTAGAAAAGAATGAAGGCAGTGATGAAGCTTTTGCCCAGGAGAAGGCTAAGAAAATATGTACGGAGATAAATGCCAAGAACCAGTGTTGCTCTGTAAGGTCAAGGAAACAAAAGGTGGTCTCTATGCCCAACATACTCGATGAGGTATCGGAAATCAAGAAGCAAGCAAATAAGAATACTACAACTGAGTCGTCCCATGTAACTGTCCCTACAGATGATAACAGGAAAGTCTCTAACGTCAAGAATGTATCCACAAAACTTGCTAGCGAAGCCAAGTCATCTGATCGAGAATTGAAATTCAACAAAAGGGTCAGAGTTTCCTCTGGTGATGACTCAAAGGATAAGGAGGTATCAGAGATCAAGAAGCAAGCAAATAAGAATGCTCCAACTGAGTTGCCCCGTAGAAATCTCCCTACAAATGTTAGCAGGGAACTATCAGGAGTCAGAAAATGTGCTAGAGAAGCCAAGTCATGTGATCGAAAAACTACCAAAAAGTTGAGAGTTTCCTTTGATGACAATTCAAAAGATGAGGCTGTTATTGAGATTCGAGAGGGTCAACATAATGTTAATGAAAATGGTAACCAACCCTCTGAGAAGAGCAAAGGCAATTCCAATGCTAGAATTTTTACTGACCGATCATCAATGCAGAAGCTTCCTACATTGAAGAATGATGTGGTTTTGAGGAGATGTGATGCAGTTACTAGTAACATTCAATGTGCCTTTTGTCTTTCATCAGAAGAATCAGAGGCATCAGGAGAAATGGTTCACTATTATAATGGCAAGCCTGTTGCCGCAGATCACAATGGAGGGTCCAAGGTTATACATTCACACAGGAACTGCACTGAATGGGCTCCCAACGTATATTTTGAAGATGATATTGCTATGAATCTTGAAGCTGAGCTAACTAGAAGTCGTAGAATTAAATGTTGTTGCTGTGGAATTAAAGGAGCATCTCTTGGGTGTTATGAGAAGAGTTGTCGTAAGAGCTTTCATGTTAGCTGTGCAAAGATGACTCCTGAATGTCGATGGGATTCTGATAATTTTGTTATGTTATGCCCCATTCATGCCTCTTCTAAGTTGCCAAATGAAAGTTCTGAATCTGAAGCAAGGAGGAAGAAGAGCAACCCTAGAAAACAACCTGGTGCTGATCATAATAAAGTTGCTGTTAAACAAGACAGCAATACCTGTCAGGATCTGAAATTTTGTGGATCATCCAAGAAATTGGTTCTCTGTTGTTCAACTCTCACAAATGCAGAGCAGGAATATGTTGCAGAATTTGAAAAATTATCTGGAGTTACAGTCTTAAAGAAGTGGGACTCTAGTATCACACATATTGTTGCGCCAATAGATGAAAATGGAGCATGCAGAAGAACCCTCAAAGTATTGTTGGGAATCTTGGAGGGGAAGTGGATACTGAGCATGGGATGGATTAAAGCTTGCATGGAAGCCATGAAACTAGTGAATGAGGAGCCTTATGAAATTAGCGTTGACATTTATGGAATCAGGGATGGCCCTCGACTTGGTAGACTAAGACTGCAGAACAAGCCAACAATGCTTGAAGGTAATAGTCACCAAAGTTCTGCACTTTTGAAAGATAGGAATGAAAACAAGAGCTTCCAAAATTATGTACATCCTTCCATTATCAACCTTGTTGATATCCAGGATGAACATGAAATGAGAAGAAAAATCGTTAGTTTACAACTCTTTTGGGCCACTGTAGATCCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006355 GO:0006357 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010638 GO:0010639 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045893 GO:0045922 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071944 GO:0080090 GO:0090068 GO:0090304 GO:0104004 GO:0140096 GO:1901360 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1905269 GO:1990234 GO:2000112 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 DYW_deaminase PPR zf-C3HC4_2 zf-HC5HC2H zf-RING_2

Protein Analysis

1036

Amino Acids

115.52

Weight (kDa)

8.83

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_6 PF14835 4 - 69 2.5e-06 zf-RING of BARD1-type protein
zf-C3HC4_3 PF13920 13 - 59 5.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 15 - 53 1.3e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 15 - 54 6.9e-08 Ring finger domain
zf-C3HC4 PF00097 16 - 53 2.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 16 - 51 2.6e-07 RING-type zinc-finger
zf-C3HC4_4 PF15227 16 - 53 9e-07 zinc finger of C3HC4-type, RING
zf-HC5HC2H_2 PF13832 735 - 797 8.5e-06 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 737 - 815 3.6e-09 PHD-like zinc-binding domain
BRCT PF00533 867 - 941 1.6e-07 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2154
Acc36I ACCTGC 1 cut(s) 871
AccI GTMKAC 2 cut(s) 563, 2905
AciI CCGC 2 cut(s) 175, 2172
AclWI GGATC 5 cut(s) 157, 332, 2580, 2596, 3095
AcoI YGGCCR 1 cut(s) 1233
AcsI RAATTY 7 cut(s) 652, 909, 991, 1676, 2001, 2579, 2654
AcuI CTGAAG 6 cut(s) 228, 333, 480, 1071, 1206, 2502
AfaI GTAC 3 cut(s) 186, 1441, 3009
AfiI CCNNNNNNNGG 6 cut(s) 387, 468, 510, 671, 1423, 2900
AflIII ACRYGT 2 cut(s) 255, 1292
AgeI ACCGGT 1 cut(s) 607
AhlI ACTAGT 2 cut(s) 2081, 2836
AjnI CCWGG 4 cut(s) 1149, 1416, 2518, 3039
AjuI GAANNNNNNNTTGG 2 cut(s) 2455, 2487
AloI GAACNNNNNNTCC 2 cut(s) 2127, 2159
Alw21I GWGCWC 2 cut(s) 848, 858
Alw26I GTCTC 3 cut(s) 1275, 1504, 1615
AlwI GGATC 5 cut(s) 157, 332, 2580, 2596, 3095
AlwNI CAGNNNCTG 2 cut(s) 2217, 2575
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 5 cut(s) 512, 839, 1233, 2890, 3090
ApeKI GCWGC 3 cut(s) 304, 1024, 1209
ApoI RAATTY 7 cut(s) 652, 909, 991, 1676, 2001, 2579, 2654
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AsiGI ACCGGT 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 2142
AspLEI GCGC 2 cut(s) 16, 2722
AspS9I GGNCC 5 cut(s) 984, 1147, 2190, 2891, 3090
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 5 cut(s) 609, 686, 968, 1718, 2942
AsuII TTCGAA 1 cut(s) 825
AsuNHI GCTAGC 1 cut(s) 1643
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 3 cut(s) 984, 1147, 2190
BaeI ACNNNNGTAYC 2 cut(s) 2686, 2719
BalI TGGCCA 1 cut(s) 1235
BanII GRGCYC 3 cut(s) 764, 858, 2233
BbsI GAAGAC 2 cut(s) 94, 750
Bbv12I GWGCWC 2 cut(s) 848, 858
BbvI GCAGC 3 cut(s) 316, 1011, 1196
BccI CCATC 6 cut(s) 290, 703, 1090, 2400, 2799, 2882
BceAI ACGGC 5 cut(s) 62, 262, 527, 826, 1222
BciT130I CCWGG 4 cut(s) 1151, 1418, 2520, 3041
BciVI GTATCC 2 cut(s) 1639, 2784
BclI TGATCA 4 cut(s) 331, 676, 895, 2527
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 3 cut(s) 1275, 1504, 1615
BcuI ACTAGT 2 cut(s) 2081, 2836
BfmI CTRYAG 3 cut(s) 1590, 2915, 3096
BfuAI ACCTGC 1 cut(s) 871
BfuI GTATCC 2 cut(s) 1639, 2784
BglI GCCNNNNNGGC 1 cut(s) 768
BisI GCNGC 4 cut(s) 305, 1025, 1210, 2172
BlpI GCTNAGC 1 cut(s) 2277
BlsI GCNGC 4 cut(s) 306, 1026, 1211, 2173
Bme1390I CCNGG 5 cut(s) 528, 1151, 1418, 2520, 3041
Bme18I GGWCC 3 cut(s) 984, 1147, 2190
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 5 cut(s) 984, 1147, 2190, 2891, 3090
BmiI GGNNCC 5 cut(s) 142, 480, 2191, 2232, 2850
BmrFI CCNGG 5 cut(s) 528, 1151, 1418, 2520, 3041
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 8 cut(s) 229, 634, 867, 1045, 1317, 2062, 2138, 2339
BmtI GCTAGC 1 cut(s) 1647
BmuI ACTGGG 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 94, 750
BpmI CTGGAG 1 cut(s) 2691
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 1 cut(s) 2277
Bpu14I TTCGAA 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 528
BsaBI GATNNNNATC 4 cut(s) 336, 894, 1059, 1194
BsaI GGTCTC 1 cut(s) 1504
BsaJI CCNNGG 3 cut(s) 1236, 1416, 2193
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 8 cut(s) 594, 624, 2127, 2157, 2664, 2694, 2771, 2801
Bsc4I CCNNNNNNNGG 6 cut(s) 387, 468, 510, 671, 1423, 2900
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 2 cut(s) 771, 1462
Bse8I GATNNNNATC 4 cut(s) 336, 894, 1059, 1194
BseBI CCWGG 4 cut(s) 1151, 1418, 2520, 3041
BseDI CCNNGG 3 cut(s) 1236, 1416, 2193
BseGI GGATG 8 cut(s) 244, 1264, 1308, 2591, 2810, 2893, 3010, 3049
BseJI GATNNNNATC 4 cut(s) 336, 894, 1059, 1194
BseLI CCNNNNNNNGG 6 cut(s) 387, 468, 510, 671, 1423, 2900
BseMII CTCAG 8 cut(s) 368, 843, 1341, 1557, 1761, 1962, 2268, 2786
BseNI ACTGG 2 cut(s) 771, 1462
BseRI GAGGAG 4 cut(s) 186, 572, 2077, 2861
BseXI GCAGC 3 cut(s) 316, 1011, 1196
BseYI CCCAGC 1 cut(s) 365
BsgI GTGCAG 3 cut(s) 797, 2203, 2946
BshFI GGCC 5 cut(s) 514, 841, 1235, 2892, 3092
BshTI ACCGGT 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 848, 858
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 2 cut(s) 527, 608
BslFI GGGAC 3 cut(s) 1558, 1571, 2708
BslI CCNNNNNNNGG 6 cut(s) 387, 468, 510, 671, 1423, 2900
BsmAI GTCTC 3 cut(s) 1275, 1504, 1615
BsmBI CGTCTC 1 cut(s) 1275
BsmFI GGGAC 3 cut(s) 1558, 1571, 2708
BsmI GAATGC 1 cut(s) 1765
BsnI GGCC 5 cut(s) 514, 841, 1235, 2892, 3092
Bso31I GGTCTC 1 cut(s) 1504
BsoBI CYCGRG 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 4 cut(s) 764, 848, 858, 2233
Bsp1407I TGTACA 1 cut(s) 3007
Bsp1720I GCTNAGC 1 cut(s) 2277
BspACI CCGC 2 cut(s) 175, 2172
BspANI GGCC 5 cut(s) 514, 841, 1235, 2892, 3092
BspCNI CTCAG 8 cut(s) 367, 844, 1342, 1558, 1762, 1963, 2269, 2787
BspLI GGNNCC 5 cut(s) 142, 480, 2191, 2232, 2850
BspMAI CTGCAG 1 cut(s) 2919
BspMI ACCTGC 1 cut(s) 871
BspOI GCTAGC 1 cut(s) 1647
BspPI GGATC 5 cut(s) 157, 332, 2580, 2596, 3095
BspQI GCTCTTC 2 cut(s) 1970, 2492
BspT104I TTCGAA 1 cut(s) 825
BspTNI GGTCTC 1 cut(s) 1504
BsrFI RCCGGY 1 cut(s) 607
BsrGI TGTACA 1 cut(s) 3007
BsrI ACTGG 2 cut(s) 771, 1462
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 1236, 1416, 2193
BssT1I CCWWGG 2 cut(s) 1236, 2193
Bst2UI CCWGG 4 cut(s) 1151, 1418, 2520, 3041
Bst4CI ACNGT 7 cut(s) 382, 522, 749, 1226, 1585, 2680, 3097
Bst6I CTCTTC 4 cut(s) 1970, 2345, 2455, 2492
BstAUI TGTACA 1 cut(s) 3007
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 9 cut(s) 309, 1243, 1278, 1545, 1645, 1749, 2162, 2743, 2818
BstEII GGTNACC 1 cut(s) 1958
BstF5I GGATG 8 cut(s) 244, 1264, 1308, 2591, 2810, 2893, 3010, 3049
BstHHI GCGC 2 cut(s) 16, 2722
BstMAI GTCTC 3 cut(s) 1275, 1504, 1615
BstMWI GCNNNNNNNGC 5 cut(s) 768, 1649, 1841, 2923, 2932
BstNI CCWGG 4 cut(s) 1151, 1418, 2520, 3041
BstNSI RCATGY 3 cut(s) 259, 1296, 2745
BstPI GGTNACC 1 cut(s) 1958
BstSCI CCNGG 5 cut(s) 526, 1149, 1416, 2518, 3039
BstSFI CTRYAG 3 cut(s) 1590, 2915, 3096
BstV1I GCAGC 3 cut(s) 316, 1011, 1196
BstV2I GAAGAC 2 cut(s) 94, 750
BstX2I RGATCY 4 cut(s) 162, 337, 2572, 3100
BstXI CCANNNNNNTGG 1 cut(s) 2602
BstYI RGATCY 4 cut(s) 162, 337, 2572, 3100
BsuI GTATCC 2 cut(s) 1639, 2784
BsuRI GGCC 5 cut(s) 514, 841, 1235, 2892, 3092
BtsCI GGATG 8 cut(s) 244, 1264, 1308, 2591, 2810, 2893, 3010, 3049
BtsI GCAGTG 3 cut(s) 966, 1351, 1405
BtsIMutI CAGTG 8 cut(s) 724, 764, 966, 1351, 1405, 1469, 2220, 3093
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 9 cut(s) 309, 1243, 1278, 1545, 1645, 1749, 2162, 2743, 2818
CaiI CAGNNNCTG 2 cut(s) 2217, 2575
CfoI GCGC 2 cut(s) 16, 2722
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 5 cut(s) 984, 1147, 2190, 2891, 3090
CseI GACGC 1 cut(s) 841
CsiI ACCWGGT 2 cut(s) 1149, 2518
Csp6I GTAC 3 cut(s) 185, 1440, 3008
CspAI ACCGGT 1 cut(s) 607
CspCI CAANNNNNGTGG 2 cut(s) 1621, 1656
CviQI GTAC 3 cut(s) 185, 1440, 3008
DraI TTTAAA 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 1233
Eam1104I CTCTTC 4 cut(s) 1970, 2345, 2455, 2492
EarI CTCTTC 4 cut(s) 1970, 2345, 2455, 2492
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 2 cut(s) 1236, 2193
Eco24I GRGCYC 3 cut(s) 764, 858, 2233
Eco31I GGTCTC 1 cut(s) 1504
Eco32I GATATC 2 cut(s) 724, 3037
Eco47I GGWCC 3 cut(s) 984, 1147, 2190
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 6 cut(s) 228, 333, 480, 1071, 1206, 2502
Eco88I CYCGRG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 1958
EcoICRI GAGCTC 1 cut(s) 856
EcoO65I GGTNACC 1 cut(s) 1958
EcoRI GAATTC 1 cut(s) 909
EcoRII CCWGG 4 cut(s) 1149, 1416, 2518, 3039
EcoRV GATATC 2 cut(s) 724, 3037
EcoT14I CCWWGG 2 cut(s) 1236, 2193
EcoT38I GRGCYC 3 cut(s) 764, 858, 2233
ErhI CCWWGG 2 cut(s) 1236, 2193
Esp3I CGTCTC 1 cut(s) 1275
FaqI GGGAC 3 cut(s) 1558, 1571, 2708
FauNDI CATATG 2 cut(s) 201, 1143
FbaI TGATCA 4 cut(s) 331, 676, 895, 2527
FblI GTMKAC 2 cut(s) 563, 2905
Fnu4HI GCNGC 4 cut(s) 305, 1025, 1210, 2172
FokI GGATG 8 cut(s) 251, 1251, 1295, 2578, 2817, 2900, 2997, 3056
FriOI GRGCYC 3 cut(s) 764, 858, 2233
Fsp4HI GCNGC 4 cut(s) 305, 1025, 1210, 2172
GlaI GCGC 2 cut(s) 15, 2721
GluI GCNGC 4 cut(s) 305, 1025, 1210, 2172
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 2691
HaeIII GGCC 5 cut(s) 514, 841, 1235, 2892, 3092
HapII CCGG 2 cut(s) 527, 608
HgaI GACGC 1 cut(s) 841
HhaI GCGC 2 cut(s) 16, 2722
Hin6I GCGC 2 cut(s) 14, 2720
HinP1I GCGC 2 cut(s) 14, 2720
HincII GTYRAC 3 cut(s) 1362, 1937, 2869
HindII GTYRAC 3 cut(s) 1362, 1937, 2869
HindIII AAGCTT 4 cut(s) 933, 1407, 2030, 2814
HpaI GTTAAC 1 cut(s) 1362
HpaII CCGG 2 cut(s) 527, 608
HphI GGTGA 5 cut(s) 609, 686, 968, 1718, 2942
Hpy166II GTNNAC 8 cut(s) 564, 959, 1362, 1937, 2146, 2869, 2906, 3077
Hpy8I GTNNAC 8 cut(s) 564, 959, 1362, 1937, 2146, 2869, 2906, 3077
HpyCH4III ACNGT 7 cut(s) 382, 522, 749, 1226, 1585, 2680, 3097
HpyCH4IV ACGT 2 cut(s) 1617, 2238
HpyF10VI GCNNNNNNNGC 5 cut(s) 768, 1649, 1841, 2923, 2932
HpySE526I ACGT 2 cut(s) 1617, 2238
HspAI GCGC 2 cut(s) 14, 2720
Ksp22I TGATCA 4 cut(s) 331, 676, 895, 2527
KspAI GTTAAC 1 cut(s) 1362
LguI GCTCTTC 2 cut(s) 1970, 2492
LmnI GCTCC 7 cut(s) 199, 851, 1768, 2236, 2327, 2738, 2848
Lsp1109I GCAGC 3 cut(s) 316, 1011, 1196
LweI GCATC 8 cut(s) 229, 634, 867, 1045, 1317, 2062, 2138, 2339
MabI ACCWGGT 2 cut(s) 1149, 2518
MaeII ACGT 2 cut(s) 1617, 2238
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 4 cut(s) 162, 337, 2572, 3100
MhlI GDGCHC 4 cut(s) 764, 848, 858, 2233
MlsI TGGCCA 1 cut(s) 1235
MluNI TGGCCA 1 cut(s) 1235
MmeI TCCRAC 2 cut(s) 482, 1790
Mox20I TGGCCA 1 cut(s) 1235
MroXI GAANNNNTTC 1 cut(s) 2142
MscI TGGCCA 1 cut(s) 1235
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 1235
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 527, 608
MspR9I CCNGG 5 cut(s) 528, 1151, 1418, 2520, 3041
MunI CAATTG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 1765
MvaI CCWGG 4 cut(s) 1151, 1418, 2520, 3041
MwoI GCNNNNNNNGC 5 cut(s) 768, 1649, 1841, 2923, 2932
NciI CCSGG 1 cut(s) 528
NdeI CATATG 2 cut(s) 201, 1143
NheI GCTAGC 1 cut(s) 1643
NlaIV GGNNCC 5 cut(s) 142, 480, 2191, 2232, 2850
NmeAIII GCCGAG 1 cut(s) 1252
NmuCI GTSAC 4 cut(s) 635, 964, 1220, 2948
NspI RCATGY 3 cut(s) 259, 1296, 2745
NspV TTCGAA 1 cut(s) 825
PaeI GCATGC 1 cut(s) 2745
PaeR7I CTCGAG 1 cut(s) 20
PciI ACATGT 2 cut(s) 255, 1292
PciSI GCTCTTC 2 cut(s) 1970, 2492
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 839
PctI GAATGC 1 cut(s) 1765
PdmI GAANNNNTTC 1 cut(s) 2142
PfeI GAWTC 8 cut(s) 431, 1924, 2120, 2266, 2411, 2477, 2772, 2880
PfoI TCCNGGA 1 cut(s) 3039
PinAI ACCGGT 1 cut(s) 607
PkrI GCNGC 4 cut(s) 306, 1026, 1211, 2173
PscI ACATGT 2 cut(s) 255, 1292
PsiI TTATAA 1 cut(s) 2154
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 4 cut(s) 1149, 1416, 2518, 3039
PspEI GGTNACC 1 cut(s) 1958
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 4 cut(s) 1149, 1416, 2518, 3039
PspN4I GGNNCC 5 cut(s) 142, 480, 2191, 2232, 2850
PspPI GGNCC 5 cut(s) 984, 1147, 2190, 2891, 3090
PstI CTGCAG 1 cut(s) 2919
PstNI CAGNNNCTG 2 cut(s) 2217, 2575
PsuI RGATCY 4 cut(s) 162, 337, 2572, 3100
RsaI GTAC 3 cut(s) 186, 1441, 3009
RsaNI GTAC 3 cut(s) 185, 1440, 3008
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 2 cut(s) 1970, 2492
SatI GCNGC 4 cut(s) 305, 1025, 1210, 2172
Sau96I GGNCC 5 cut(s) 984, 1147, 2190, 2891, 3090
ScrFI CCNGG 5 cut(s) 528, 1151, 1418, 2520, 3041
SduI GDGCHC 4 cut(s) 764, 848, 858, 2233
SexAI ACCWGGT 2 cut(s) 1149, 2518
SfaNI GCATC 8 cut(s) 229, 634, 867, 1045, 1317, 2062, 2138, 2339
SfcI CTRYAG 3 cut(s) 1590, 2915, 3096
Sfr274I CTCGAG 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 3 cut(s) 984, 1147, 2190
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 2 cut(s) 2081, 2836
SphI GCATGC 1 cut(s) 2745
SsiI CCGC 2 cut(s) 175, 2172
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 5 cut(s) 526, 1149, 1416, 2518, 3039
StyI CCWWGG 2 cut(s) 1236, 2193
TaaI ACNGT 7 cut(s) 382, 522, 749, 1226, 1585, 2680, 3097
TaiI ACGT 2 cut(s) 1620, 2241
TaqI TCGA 8 cut(s) 21, 825, 1518, 1666, 1858, 1927, 2404, 2896
TaqII GACCGA 1 cut(s) 2028
TatI WGTACW 1 cut(s) 3007
TauI GCSGC 1 cut(s) 2174
TfiI GAWTC 8 cut(s) 431, 1924, 2120, 2266, 2411, 2477, 2772, 2880
TscAI CASTG 8 cut(s) 724, 771, 973, 1351, 1405, 1469, 2227, 3100
TseFI GTSAC 4 cut(s) 635, 964, 1220, 2948
TseI GCWGC 3 cut(s) 304, 1024, 1209
Tsp45I GTSAC 4 cut(s) 635, 964, 1220, 2948
TspGWI ACGGA 2 cut(s) 1257, 1457
TspRI CASTG 8 cut(s) 724, 771, 973, 1351, 1405, 1469, 2227, 3100
VpaK11BI GGWCC 3 cut(s) 984, 1147, 2190
XapI RAATTY 7 cut(s) 652, 909, 991, 1676, 2001, 2579, 2654
XbaI TCTAGA 2 cut(s) 752, 995
XceI RCATGY 3 cut(s) 259, 1296, 2745
XhoI CTCGAG 1 cut(s) 20
XmiI GTMKAC 2 cut(s) 563, 2905
XmnI GAANNNNTTC 1 cut(s) 2142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.