Rorug05G0024400

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008716
Physical Location & Seq
Forward (+)
1551062 .. 1552974
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0024400.1

Sequence Viewer

Length: 990 bp
ATGGCTTCCAGAGCTCTCTTCTTCTTTGCTTTGCTATCTCTCTCAGCAGTGCTTTGCTTTGCTGAGAGCAATGAGGAAGACCCAGGTCTTGTTATGAATTTCTACAGTGACTCATGTCCTCAGGCTGAAGATATCGTCAGAGAGCAGGTCAAGCTCCTCTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCACTACTTTTGGACTCAACAAGGAGGTCTTTGTCTGAGAAAGAAATGGACAGAAGCTTTGGGATGAGAAATTTTAGGTACATTGAAGAGATCAAAGAAGCAATAGAGAGGGAGTGCCCTGGAGTTGTTTCTTGCTCAGATATTCTTGTTTTGTCAGCCAGAGAAGGAGTTGTTAGGCTAGGAGGCCCATTTATTCCTCTTAAAACCGGAAGGAGAGATGGTAGAAGGAGCAGAGCAGAGATCCTTGAGGAGTACCTTCCTGACCACAATGAGAGCATGTCAACTGTTCTTGAGAAGTTCTCTGCCATGGGCATTGACACCCCTGGAGTTGTTGCCCTTCTAGGAGCTCACAGTGTTGGAAGAACACACTGTGTGAAGCTGGTGCACCGTTTGTACCCAGAAGTTGACCCAGCTCTGAATCCAGACCACGTCCCCCACATGCTCAAGAAGTGCCCTGATGCTATCCCTGACCCCAAGGCAGTCCAGTACGTGAGAAATGACCGTGGTACCCCCATGATCTTCGACAACAACTACTACAGGAACATCTTGGACAACAAGGGTTTGATGATGGTGGATCACCAGCTTGCCACAGACAAGAGGACCAAGCCCTATGTCAAGAAAATGGCCAAAAGCCAAGACTACTTCTTCAAGGAGTTCACAAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTCACCGGAGACAAGGGGGAGATCAGGCAACAGTGCAATGTGGCCAACAAGCTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006355 GO:0006357 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010638 GO:0010639 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045893 GO:0045922 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071944 GO:0080090 GO:0090068 GO:0090304 GO:0104004 GO:0140096 GO:1901360 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1905269 GO:1990234 GO:2000112 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 DYW_deaminase PPR zf-C3HC4_2 zf-HC5HC2H zf-RING_2

Protein Analysis

329

Amino Acids

37.45

Weight (kDa)

7.6

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 290 3.6e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 136
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AclWI GGATC 2 cut(s) 472, 819
AcoI YGGCCR 2 cut(s) 861, 972
AcsI RAATTY 2 cut(s) 97, 307
AcuI CTGAAG 1 cut(s) 147
AdeI CACNNNGTG 2 cut(s) 608, 610
AfaI GTAC 5 cut(s) 317, 491, 632, 725, 745
AfiI CCNNNNNNNGG 1 cut(s) 935
AgsI TTSAA 2 cut(s) 323, 886
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 3 cut(s) 82, 355, 559
AluBI AGCT 8 cut(s) 14, 154, 294, 584, 616, 650, 820, 982
AluI AGCT 8 cut(s) 14, 154, 294, 584, 616, 650, 820, 982
Alw21I GWGCWC 3 cut(s) 16, 586, 624
Alw26I GTCTC 1 cut(s) 933
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 2 cut(s) 472, 819
AoxI GGCC 3 cut(s) 421, 861, 972
ApaLI GTGCAC 1 cut(s) 620
ApoI RAATTY 2 cut(s) 97, 307
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 422, 837
AsuHPI GGTGA 3 cut(s) 806, 898, 925
AvaII GGWCC 1 cut(s) 837
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 3 cut(s) 356, 624, 692
BaeI ACNNNNGTAYC 2 cut(s) 727, 760
BalI TGGCCA 2 cut(s) 863, 974
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 16, 586
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 3 cut(s) 16, 586, 624
BccI CCATC 2 cut(s) 449, 799
BciT130I CCWGG 3 cut(s) 84, 357, 561
BcoDI GTCTC 1 cut(s) 933
BfaI CTAG 3 cut(s) 416, 578, 988
BfmI CTRYAG 2 cut(s) 103, 772
BfoI RGCGCY 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 136
Bme1390I CCNGG 3 cut(s) 84, 357, 561
Bme18I GGWCC 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 2 cut(s) 422, 837
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 3 cut(s) 84, 357, 561
BmsI GCATC 2 cut(s) 223, 685
BoxI GACNNNNGTC 2 cut(s) 84, 114
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 2 cut(s) 378, 582
BpuEI CTTGAG 3 cut(s) 503, 548, 665
BsaAI YACGTR 1 cut(s) 727
BsaJI CCNNGG 6 cut(s) 82, 355, 543, 559, 711, 739
BsaWI WCCGGW 2 cut(s) 443, 935
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 935
Bse1I ACTGG 2 cut(s) 223, 721
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 76, 973
BseBI CCWGG 3 cut(s) 84, 357, 561
BseDI CCNNGG 6 cut(s) 82, 355, 543, 559, 711, 739
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 935
BseMI GCAATG 2 cut(s) 76, 973
BseMII CTCAG 6 cut(s) 54, 57, 134, 208, 264, 387
BseNI ACTGG 2 cut(s) 223, 721
BseRI GAGGAG 2 cut(s) 146, 500
BseSI GKGCMC 3 cut(s) 356, 624, 692
BseYI CCCAGC 1 cut(s) 646
BshFI GGCC 3 cut(s) 423, 863, 974
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 3 cut(s) 16, 586, 624
BsiSI CCGG 2 cut(s) 444, 936
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 935
BsmAI GTCTC 1 cut(s) 933
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 3 cut(s) 423, 863, 974
Bsp1286I GDGCHC 5 cut(s) 16, 356, 586, 624, 692
Bsp143I GATC 5 cut(s) 327, 477, 753, 811, 951
Bsp19I CCATGG 1 cut(s) 543
BspANI GGCC 3 cut(s) 423, 863, 974
BspCNI CTCAG 6 cut(s) 55, 56, 133, 207, 265, 386
BspLI GGNNCC 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 472, 819
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 2 cut(s) 76, 973
BsrI ACTGG 2 cut(s) 223, 721
BssECI CCNNGG 6 cut(s) 82, 355, 543, 559, 711, 739
BssMI GATC 5 cut(s) 327, 477, 753, 811, 951
BssT1I CCWWGG 2 cut(s) 543, 711
Bst2UI CCWGG 3 cut(s) 84, 357, 561
Bst4CI ACNGT 8 cut(s) 107, 215, 523, 590, 608, 626, 740, 963
Bst6I CTCTTC 2 cut(s) 23, 318
BstBAI YACGTR 1 cut(s) 727
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 6 cut(s) 43, 63, 120, 194, 273, 373
BstDSI CCRYGG 2 cut(s) 543, 739
BstF5I GGATG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 5 cut(s) 330, 480, 756, 814, 954
BstMAI GTCTC 1 cut(s) 933
BstMBI GATC 5 cut(s) 327, 477, 753, 811, 951
BstMWI GCNNNNNNNGC 2 cut(s) 11, 151
BstNI CCWGG 3 cut(s) 84, 357, 561
BstNSI RCATGY 2 cut(s) 517, 679
BstPAI GACNNNNGTC 2 cut(s) 84, 114
BstSCI CCNGG 3 cut(s) 82, 355, 559
BstSFI CTRYAG 2 cut(s) 103, 772
BstSLI GKGCMC 3 cut(s) 356, 624, 692
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 3 cut(s) 423, 863, 974
BtgI CCRYGG 2 cut(s) 543, 739
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 2 cut(s) 54, 177
BtsIMutI CAGTG 6 cut(s) 54, 112, 177, 595, 604, 968
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 822
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 422, 837
Csp6I GTAC 5 cut(s) 316, 490, 631, 724, 744
CviAII CATG 7 cut(s) 114, 209, 228, 514, 544, 676, 751
CviQI GTAC 5 cut(s) 316, 490, 631, 724, 744
DdeI CTNAG 6 cut(s) 43, 63, 120, 194, 273, 373
DpnI GATC 5 cut(s) 329, 479, 755, 813, 953
DpnII GATC 5 cut(s) 327, 477, 753, 811, 951
DraIII CACNNNGTG 2 cut(s) 608, 610
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 861, 972
Eam1104I CTCTTC 2 cut(s) 23, 318
EarI CTCTTC 2 cut(s) 23, 318
Ecl136II GAGCTC 2 cut(s) 14, 584
Eco130I CCWWGG 2 cut(s) 543, 711
Eco24I GRGCYC 2 cut(s) 16, 586
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 837
Eco53kI GAGCTC 2 cut(s) 14, 584
Eco57I CTGAAG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 120
EcoICRI GAGCTC 2 cut(s) 14, 584
EcoRII CCWGG 3 cut(s) 82, 355, 559
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 543, 711
EcoT38I GRGCYC 2 cut(s) 16, 586
ErhI CCWWGG 2 cut(s) 543, 711
FaeI CATG 7 cut(s) 117, 212, 231, 517, 547, 679, 754
FaiI YATR 9 cut(s) 95, 115, 210, 229, 515, 545, 677, 752, 849
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 113, 208, 227, 513, 543, 675, 750
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 16, 586
FspBI CTAG 3 cut(s) 416, 578, 988
GlaI GCGC 1 cut(s) 167
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 2 cut(s) 378, 582
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 3 cut(s) 423, 863, 974
HapII CCGG 2 cut(s) 444, 936
HhaI GCGC 1 cut(s) 168
Hin1II CATG 7 cut(s) 117, 212, 231, 517, 547, 679, 754
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 2 cut(s) 519, 643
HindII GTYRAC 2 cut(s) 519, 643
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 3 cut(s) 110, 251, 655
HpaII CCGG 2 cut(s) 444, 936
HphI GGTGA 3 cut(s) 806, 898, 925
Hpy166II GTNNAC 4 cut(s) 519, 622, 643, 894
Hpy188I TCNGA 6 cut(s) 140, 197, 274, 376, 654, 919
Hpy188III TCNNGA 6 cut(s) 9, 497, 527, 659, 682, 853
Hpy8I GTNNAC 4 cut(s) 519, 622, 643, 894
HpyAV CCTTC 6 cut(s) 395, 441, 456, 503, 584, 913
HpyCH4III ACNGT 8 cut(s) 107, 215, 523, 590, 608, 626, 740, 963
HpyCH4IV ACGT 2 cut(s) 666, 726
HpyCH4V TGCA 2 cut(s) 622, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 151
HpyF3I CTNAG 6 cut(s) 43, 63, 120, 194, 273, 373
HpySE526I ACGT 2 cut(s) 666, 726
Hsp92II CATG 7 cut(s) 117, 212, 231, 517, 547, 679, 754
HspAI GCGC 1 cut(s) 166
KpnI GGTACC 1 cut(s) 747
Kzo9I GATC 5 cut(s) 327, 477, 753, 811, 951
LmnI GCTCC 4 cut(s) 159, 465, 581, 987
LweI GCATC 2 cut(s) 223, 685
MaeI CTAG 3 cut(s) 416, 578, 988
MaeII ACGT 2 cut(s) 666, 726
MaeIII GTNAC 1 cut(s) 107
MalI GATC 5 cut(s) 329, 479, 755, 813, 953
MboI GATC 5 cut(s) 327, 477, 753, 811, 951
MboII GAAGA 9 cut(s) 10, 13, 89, 140, 196, 335, 609, 748, 874
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 5 cut(s) 16, 356, 586, 624, 692
MlsI TGGCCA 2 cut(s) 863, 974
MluCI AATT 2 cut(s) 97, 307
MluNI TGGCCA 2 cut(s) 863, 974
MlyI GAGTC 2 cut(s) 104, 245
MmeI TCCRAC 1 cut(s) 574
Mox20I TGGCCA 2 cut(s) 863, 974
MscI TGGCCA 2 cut(s) 863, 974
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 2 cut(s) 863, 974
MspI CCGG 2 cut(s) 444, 936
MspR9I CCNGG 3 cut(s) 84, 357, 561
MvaI CCWGG 3 cut(s) 84, 357, 561
MwoI GCNNNNNNNGC 2 cut(s) 11, 151
NcoI CCATGG 1 cut(s) 543
NdeII GATC 5 cut(s) 327, 477, 753, 811, 951
NlaIII CATG 7 cut(s) 117, 212, 231, 517, 547, 679, 754
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 2 cut(s) 517, 679
PfeI GAWTC 1 cut(s) 655
PflFI GACNNNGTC 1 cut(s) 665
PleI GAGTC 2 cut(s) 104, 245
PpsI GAGTC 2 cut(s) 104, 245
Ppu21I YACGTR 1 cut(s) 727
PshAI GACNNNNGTC 2 cut(s) 84, 114
Psp124BI GAGCTC 2 cut(s) 16, 586
Psp6I CCWGG 3 cut(s) 82, 355, 559
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 3 cut(s) 82, 355, 559
PspN4I GGNNCC 1 cut(s) 745
PspPI GGNCC 2 cut(s) 422, 837
PsuI RGATCY 1 cut(s) 477
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 5 cut(s) 317, 491, 632, 725, 745
RsaNI GTAC 5 cut(s) 316, 490, 631, 724, 744
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 2 cut(s) 16, 586
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 5 cut(s) 327, 477, 753, 811, 951
Sau96I GGNCC 2 cut(s) 422, 837
SchI GAGTC 2 cut(s) 104, 245
ScrFI CCNGG 3 cut(s) 84, 357, 561
SduI GDGCHC 5 cut(s) 16, 356, 586, 624, 692
SfaNI GCATC 2 cut(s) 223, 685
SfcI CTRYAG 2 cut(s) 103, 772
SinI GGWCC 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 482, 527, 680
SmoI CTYRAG 3 cut(s) 482, 527, 680
Sse9I AATT 2 cut(s) 97, 307
SspMI CTAG 3 cut(s) 416, 578, 988
SstI GAGCTC 2 cut(s) 16, 586
StyD4I CCNGG 3 cut(s) 82, 355, 559
StyI CCWWGG 2 cut(s) 543, 711
TaaI ACNGT 8 cut(s) 107, 215, 523, 590, 608, 626, 740, 963
TaiI ACGT 2 cut(s) 669, 729
TaqI TCGA 1 cut(s) 759
TasI AATT 2 cut(s) 97, 307
TfiI GAWTC 1 cut(s) 655
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 6 cut(s) 54, 112, 184, 595, 611, 968
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 6 cut(s) 54, 112, 184, 595, 611, 968
Tth111I GACNNNGTC 1 cut(s) 665
VneI GTGCAC 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 837
XapI RAATTY 2 cut(s) 97, 307
XceI RCATGY 2 cut(s) 517, 679
XspI CTAG 3 cut(s) 416, 578, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.