Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Reverse (-)

7422641 .. 7423544

Gene Structure 904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGTTATGGATTCAGATCAAGGTATTAAAGATTTTGTGGCGGTTTTGCGTCGCGTGTTTGATGATGTTTAATGCGTTCGCGATATTGAATGAGGAGAGGCTCCTTACTCCGAGAGGATACACATTGCGACGCAATCAACCATTATTGGCGGCGCTTATACCAGTGTGTCATACGGCCCGCTTCTTCAGTTTTCTTCTCATAGTGTTGAACACCATTGTCATGCTAGCCTTGTTCAACTCGACGATTGTCAAGTTCAATTTGTATTTTACGGTTCTATTACTCACAATTACTCTCTGCACGTACTTGAAGAGGTACATCCCCAAGTTTGTTGAAAGAAAACCCGGGTTTGAAGGGATTCCTTGGAAAGCAGCTAGAATTGGTGAACGCTTGAGCCCTTGGATTTCTGCTGGATGTCTTATATCTTCGATCATGTCGATGGAGCATCTTCCTACTGACCTTCTCCCCTCCCGCACCAAGGGACCGTTTTCACCTTTCTTGGAAAGCATTTCAACAATGGAAGGAGACTGCCATGAAGGAGGGCTCGCAGAGGGGTCCCTGAGAGATCGAGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

193

Amino Acids

21.93

Weight (kDa)

9.3

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yos1	PF08571	13 - 76	5e-07	Yos1-like
DUF1242	PF06842	91 - 122	2.5e-06	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	56, 83
AciI	CCGC	4 cut(s)	43, 152, 181, 472
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	305, 317
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	8 cut(s)	91, 211, 238, 259, 310, 335, 353, 513
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	519, 564
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	178, 482, 555
AsuC2I	CCSGG	2 cut(s)	345, 346
AsuHPI	GGTGA	2 cut(s)	395, 483
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	482, 555
BanII	GRGCYC	2 cut(s)	398, 546
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	2 cut(s)	345, 346
BcoDI	GTCTC	2 cut(s)	519, 564
BfaI	CTAG	2 cut(s)	227, 375
BfoI	RGCGCY	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	153, 372
BlsI	GCNGC	2 cut(s)	154, 373
Bme1390I	CCNGG	2 cut(s)	345, 346
Bme18I	GGWCC	2 cut(s)	482, 555
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	178, 482, 555
BmiI	GGNNCC	4 cut(s)	104, 483, 556, 557
BmrFI	CCNGG	2 cut(s)	345, 346
BmsI	GCATC	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	2 cut(s)	345, 346
BsaAI	YACGTR	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	344, 362, 398, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	344, 362, 398, 477
BseGI	GGATG	2 cut(s)	318, 419
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	56, 83
BshFI	GGCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	2 cut(s)	495, 541
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	519, 564
BsmFI	GGGAC	2 cut(s)	495, 541
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	398, 546
Bsp143I	GATC	3 cut(s)	18, 429, 565
Bsp68I	TCGCGA	1 cut(s)	83
BspACI	CCGC	4 cut(s)	43, 152, 181, 472
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	552
BspFNI	CGCG	2 cut(s)	56, 83
BspLI	GGNNCC	4 cut(s)	104, 483, 556, 557
BspOI	GCTAGC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	344, 362, 398, 477
BssMI	GATC	3 cut(s)	18, 429, 565
BssT1I	CCWWGG	3 cut(s)	362, 398, 477
Bst4CI	ACNGT	2 cut(s)	274, 486
Bst6I	CTCTTC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	181, 228, 546
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	318, 419
BstFNI	CGCG	2 cut(s)	56, 83
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	3 cut(s)	21, 432, 568
BstMAI	GTCTC	2 cut(s)	519, 564
BstMBI	GATC	3 cut(s)	18, 429, 565
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	343, 344
BstUI	CGCG	2 cut(s)	56, 83
BstV1I	GCAGC	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	318, 419
BtsIMutI	CAGTG	1 cut(s)	171
BtuMI	TCGCGA	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	181, 228, 546
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	178, 482, 555
Cfr9I	CCCGGG	1 cut(s)	344
CseI	GACGC	2 cut(s)	40, 141
Csp6I	GTAC	2 cut(s)	304, 316
CviAII	CATG	3 cut(s)	223, 433, 533
CviJI	RGCY	6 cut(s)	103, 179, 230, 374, 396, 544
CviKI_1	RGCY	6 cut(s)	103, 179, 230, 374, 396, 544
CviQI	GTAC	2 cut(s)	304, 316
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	20, 431, 567
DpnII	GATC	3 cut(s)	18, 429, 565
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	3 cut(s)	362, 398, 477
Eco24I	GRGCYC	2 cut(s)	398, 546
Eco31I	GGTCTC	1 cut(s)	564
Eco47I	GGWCC	2 cut(s)	482, 555
Eco57I	CTGAAG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	555
EcoT14I	CCWWGG	3 cut(s)	362, 398, 477
EcoT38I	GRGCYC	2 cut(s)	398, 546
ErhI	CCWWGG	3 cut(s)	362, 398, 477
FaeI	CATG	3 cut(s)	226, 436, 536
FaiI	YATR	8 cut(s)	10, 161, 174, 203, 224, 422, 434, 534
FaqI	GGGAC	2 cut(s)	495, 541
FatI	CATG	3 cut(s)	222, 432, 532
FauI	CCCGC	2 cut(s)	188, 479
Fnu4HI	GCNGC	2 cut(s)	153, 372
FokI	GGATG	2 cut(s)	305, 426
FriOI	GRGCYC	2 cut(s)	398, 546
Fsp4HI	GCNGC	2 cut(s)	153, 372
FspBI	CTAG	2 cut(s)	227, 375
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	153, 372
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	2 cut(s)	40, 141
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	226, 436, 536
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	2 cut(s)	13, 358
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	395, 483
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	3 cut(s)	18, 114, 578
Hpy188III	TCNNGA	2 cut(s)	82, 569
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	3 cut(s)	56, 135, 247
HpyAV	CCTTC	4 cut(s)	347, 470, 515, 530
HpyCH4III	ACNGT	2 cut(s)	274, 486
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	226, 436, 536
HspAI	GCGC	1 cut(s)	155
KflI	GGGWCCC	1 cut(s)	555
Kzo9I	GATC	3 cut(s)	18, 429, 565
LmnI	GCTCC	2 cut(s)	108, 442
LpnPI	CCDG	4 cut(s)	177, 358, 396, 572
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	227, 375
MaeII	ACGT	1 cut(s)	302
MalI	GATC	3 cut(s)	20, 431, 567
MboI	GATC	3 cut(s)	18, 429, 565
MboII	GAAGA	5 cut(s)	178, 188, 322, 417, 440
MhlI	GDGCHC	2 cut(s)	398, 546
MluCI	AATT	3 cut(s)	259, 288, 378
MnlI	CCTC	7 cut(s)	88, 93, 110, 306, 478, 533, 544
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	29, 72
MslI	CAYNNNNRTG	2 cut(s)	221, 437
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	345, 346
MvnI	CGCG	2 cut(s)	56, 83
NciI	CCSGG	2 cut(s)	345, 346
NdeII	GATC	3 cut(s)	18, 429, 565
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	226, 436, 536
NlaIV	GGNNCC	4 cut(s)	104, 483, 556, 557
NruI	TCGCGA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	13, 358
PkrI	GCNGC	2 cut(s)	154, 373
Ppu21I	YACGTR	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	555
PshAI	GACNNNNGTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	555
PspN4I	GGNNCC	4 cut(s)	104, 483, 556, 557
PspPI	GGNCC	3 cut(s)	178, 482, 555
PspPPI	RGGWCCY	1 cut(s)	555
RruI	TCGCGA	1 cut(s)	83
RsaI	GTAC	2 cut(s)	305, 317
RsaNI	GTAC	2 cut(s)	304, 316
RseI	CAYNNNNRTG	2 cut(s)	221, 437
SaqAI	TTAA	2 cut(s)	29, 72
SatI	GCNGC	2 cut(s)	153, 372
Sau3AI	GATC	3 cut(s)	18, 429, 565
Sau96I	GGNCC	3 cut(s)	178, 482, 555
ScrFI	CCNGG	2 cut(s)	345, 346
SduI	GDGCHC	2 cut(s)	398, 546
SetI	ASST	7 cut(s)	27, 305, 317, 376, 462, 496, 576
SfaNI	GCATC	1 cut(s)	454
SinI	GGWCC	2 cut(s)	482, 555
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	221, 437
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	259, 288, 378
SsiI	CCGC	4 cut(s)	43, 152, 181, 472
SspMI	CTAG	2 cut(s)	227, 375
StyD4I	CCNGG	2 cut(s)	343, 344
StyI	CCWWGG	3 cut(s)	362, 398, 477
TaaI	ACNGT	2 cut(s)	274, 486
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	4 cut(s)	242, 428, 437, 568
TasI	AATT	3 cut(s)	259, 288, 378
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	13, 358
Tru1I	TTAA	2 cut(s)	29, 72
Tru9I	TTAA	2 cut(s)	29, 72
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	482, 555
XmaI	CCCGGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	227, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.