Rh7BG084900

Involved in the early part of the secretory pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004822
Physical Location & Seq
Reverse (-)
6176416 .. 6177627
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG084900.1

Sequence Viewer

Length: 213 bp
ATGTCGGCGCTTTTCAATTTCAATTCGTTCTTGACGGTGGTGCTGCTCGTGATTTGCACGTGCACCTTCTTGAAGATGCAGTTCCCGGCCCTCCTGGAACAGAAAACTGGGTTTCGGGGATTTTTTTGGAAGGCCGCTAGAATAGGTGAACGCTTGAGCCCTTGGGTTGCTGCTGGATGCATTGCGATGGGTGTCTCAATTATACTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1242

Protein Analysis

70

Amino Acids

7.82

Weight (kDa)

9.5

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1242 PF06842 10 - 43 1.2e-16 Protein of unknown function (DUF1242)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcvI CACGTG 1 cut(s) 60
AgsI TTSAA 3 cut(s) 16, 22, 73
AjnI CCWGG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 61
AoxI GGCC 2 cut(s) 87, 132
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 43, 170
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 30, 157
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 138, 211
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 3 cut(s) 44, 135, 171
BlsI GCNGC 3 cut(s) 45, 136, 172
Bme1390I CCNGG 2 cut(s) 86, 95
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 86, 95
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 66, 167
BmuI ACTGGG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 30, 157
BshFI GGCC 2 cut(s) 89, 134
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 89, 134
Bsp1286I GDGCHC 2 cut(s) 65, 161
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 89, 134
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 161
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 60
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 84, 93
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 30, 157
BsuRI GGCC 2 cut(s) 89, 134
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 182
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 88
CviJI RGCY 3 cut(s) 89, 134, 159
CviKI_1 RGCY 3 cut(s) 89, 134, 159
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaiI YATR 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 44, 135, 171
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 44, 135, 171
FspBI CTAG 2 cut(s) 138, 211
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 44, 135, 171
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 89, 134
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 63, 149
Hpy188III TCNNGA 3 cut(s) 31, 49, 70
Hpy8I GTNNAC 2 cut(s) 63, 149
HpyAV CCTTC 2 cut(s) 76, 124
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 57, 63, 79, 180
HpySE526I ACGT 1 cut(s) 59
HspAI GCGC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 80, 93, 99, 107, 159
Lsp1109I GCAGC 2 cut(s) 30, 157
LweI GCATC 2 cut(s) 66, 167
MaeI CTAG 2 cut(s) 138, 211
MaeII ACGT 1 cut(s) 59
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 65, 161
MluCI AATT 3 cut(s) 16, 22, 198
MnlI CCTC 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 95
MvaI CCWGG 1 cut(s) 95
NciI CCSGG 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 45, 136, 172
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 3 cut(s) 44, 135, 171
Sau96I GGNCC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 86, 95
SduI GDGCHC 2 cut(s) 65, 161
SetI ASST 3 cut(s) 62, 68, 148
SfaNI GCATC 2 cut(s) 66, 167
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 3 cut(s) 16, 22, 198
SsiI CCGC 1 cut(s) 135
SspMI CTAG 2 cut(s) 138, 211
StyD4I CCNGG 2 cut(s) 84, 93
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 62
TasI AATT 3 cut(s) 16, 22, 198
TauI GCSGC 1 cut(s) 137
TseI GCWGC 2 cut(s) 43, 170
VneI GTGCAC 1 cut(s) 61
XspI CTAG 2 cut(s) 138, 211
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.