Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Reverse (-)

15707874 .. 15708494

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG149900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTAATGCCGATGGTTTTGATCGACGCTTTTCGGGTTTTGTGGCGATTCTGTGTGGCCTGGCTTATGCTCTTCAACGCATTTGGAATACTGAATGAGGAGAGGTTCCTTTCTCCGAGAGGGTACACAATGCGACACAGTCAATTGTTAGCGGCACTAAGAGAACGAGATTTTAGAGGGAGAAGAGACTGGAGGAGGATTATTAAGGCTGCGCTTATATTAATCTTGAATGCCGCTCGTTTCCTGAATTTTCTTCTCATAGGGTTAAACACCATCTGCATTGTCACACTACTCTTGTTCAACTCAACGATTATCAAGTTCAATTTGTATTTTGCGGTTGTATTGCTTACAATTACTCTATGCACCTACTTGAAGATGTATATCCCCAAGATATTTGAGGAAAGAAAACCTGGGTTTGAAGGGATTCCTTGGAAAGCAGCTAGAATAGGTGAACGCTTGAGCCCCTGGATTGCTGCTGGATGTCTTATATCTTCGATTTCAATTATGTTTACATTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

173

Amino Acids

20.19

Weight (kDa)

10.34

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yos1	PF08571	14 - 100	1.9e-12	Yos1-like
DUF1242	PF06842	113 - 144	1.4e-07	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AciI	CCGC	3 cut(s)	152, 234, 335
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	7 cut(s)	76, 229, 301, 322, 373, 419, 501
AjnI	CCWGG	3 cut(s)	59, 409, 464
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	209, 437, 473
ApoI	RAATTY	1 cut(s)	247
AseI	ATTAAT	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	196, 449, 460
BccI	CCATC	2 cut(s)	7, 281
BciT130I	CCWGG	3 cut(s)	61, 411, 466
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	441, 520
BisI	GCNGC	5 cut(s)	153, 210, 234, 438, 474
BlsI	GCNGC	5 cut(s)	154, 211, 235, 439, 475
Bme1390I	CCNGG	3 cut(s)	61, 411, 466
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	3 cut(s)	61, 411, 466
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	410, 428, 464
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	3 cut(s)	61, 411, 466
BseDI	CCNNGG	3 cut(s)	410, 428, 464
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	113, 208
BseXI	GCAGC	3 cut(s)	196, 449, 460
BshFI	GGCC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	152, 234, 335
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	410, 428, 464
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	61, 411, 466
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	77, 178
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	21
BstNI	CCWGG	3 cut(s)	61, 411, 466
BstSCI	CCNGG	3 cut(s)	59, 409, 464
BstV1I	GCAGC	3 cut(s)	196, 449, 460
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	214
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	59, 64, 209, 440, 462
CviKI_1	RGCY	5 cut(s)	59, 64, 209, 440, 462
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	77, 178
EarI	CTCTTC	2 cut(s)	77, 178
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	464
EcoRII	CCWGG	3 cut(s)	59, 409, 464
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	428
FaiI	YATR	7 cut(s)	68, 218, 260, 361, 381, 488, 506
Fnu4HI	GCNGC	5 cut(s)	153, 210, 234, 438, 474
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	153, 210, 234, 438, 474
FspBI	CTAG	2 cut(s)	441, 520
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	5 cut(s)	153, 210, 234, 438, 474
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	48, 424
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	126, 452, 510
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	226, 244
Hpy8I	GTNNAC	3 cut(s)	126, 452, 510
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	279, 363
HpyF3I	CTNAG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	46, 73, 175, 257, 396, 423, 451, 462, 478
Lsp1109I	GCAGC	3 cut(s)	196, 449, 460
MaeI	CTAG	2 cut(s)	441, 520
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	1 cut(s)	21
MboII	GAAGA	5 cut(s)	64, 195, 245, 385, 483
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	5 cut(s)	143, 247, 322, 351, 501
MnlI	CCTC	7 cut(s)	91, 96, 113, 170, 186, 189, 391
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	4 cut(s)	5, 204, 221, 266
MspR9I	CCNGG	3 cut(s)	61, 411, 466
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	3 cut(s)	61, 411, 466
NdeII	GATC	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	48, 424
PflFI	GACNNNGTC	1 cut(s)	138
PkrI	GCNGC	5 cut(s)	154, 211, 235, 439, 475
PshBI	ATTAAT	1 cut(s)	221
Psp6I	CCWGG	3 cut(s)	59, 409, 464
PspGI	CCWGG	3 cut(s)	59, 409, 464
PspN4I	GGNNCC	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	5, 204, 221, 266
SatI	GCNGC	5 cut(s)	153, 210, 234, 438, 474
Sau3AI	GATC	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	61, 411, 466
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	5 cut(s)	107, 368, 412, 442, 451
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	5 cut(s)	143, 247, 322, 351, 501
SsiI	CCGC	3 cut(s)	152, 234, 335
SspMI	CTAG	2 cut(s)	441, 520
StyD4I	CCNGG	3 cut(s)	59, 409, 464
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	24, 494
TasI	AATT	5 cut(s)	143, 247, 322, 351, 501
TauI	GCSGC	2 cut(s)	155, 236
TfiI	GAWTC	2 cut(s)	48, 424
Tru1I	TTAA	4 cut(s)	5, 204, 221, 266
Tru9I	TTAA	4 cut(s)	5, 204, 221, 266
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	209, 437, 473
Tsp45I	GTSAC	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	138
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	441, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.