Rroxscaffold_3G00268360

Involved in the early part of the secretory pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004822
Physical Location & Seq
Reverse (-)
61449748 .. 61450871
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268360.1

Sequence Viewer

Length: 216 bp
ATGCAGTCGGCGCTTTTCAATTTCAATTCGTTCCTGACGGTGGTGCTGCTCGTGATTTGCACGTGCACCTTCTTGAAGATGCAGTTCCCGGCCCTCCTGGAACAGAAAACTGGGTTTCGGGGATTTTTTTGGAAGGCCGCTAGAATAGGTGAACGCTTGAGCCCTTGGGTTGCTGCTGGATGCATTGCGATGGGTGTCTCAATTATACTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1242

Protein Analysis

71

Amino Acids

7.95

Weight (kDa)

9.5

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1242 PF06842 11 - 44 1.2e-16 Protein of unknown function (DUF1242)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AcvI CACGTG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 3 cut(s) 19, 25, 76
AjnI CCWGG 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 202
Alw44I GTGCAC 1 cut(s) 64
AoxI GGCC 2 cut(s) 90, 135
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 46, 173
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 164
BauI CACGAG 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 33, 160
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 141, 214
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 3 cut(s) 47, 138, 174
BlsI GCNGC 3 cut(s) 48, 139, 175
Bme1390I CCNGG 2 cut(s) 89, 98
BmgT120I GGNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 89, 98
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 69, 170
BmuI ACTGGG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 33, 160
BshFI GGCC 2 cut(s) 92, 137
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 92, 137
Bsp1286I GDGCHC 2 cut(s) 68, 164
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 92, 137
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 164
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 63
BstF5I GGATG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 87, 96
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 33, 160
BsuRI GGCC 2 cut(s) 92, 137
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 185
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 91
CviJI RGCY 3 cut(s) 92, 137, 162
CviKI_1 RGCY 3 cut(s) 92, 137, 162
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 164
Eco72I CACGTG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaiI YATR 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 47, 138, 174
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 47, 138, 174
FspBI CTAG 2 cut(s) 141, 214
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 47, 138, 174
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 92, 137
HapII CCGG 1 cut(s) 89
HhaI GCGC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 66, 152
Hpy188III TCNNGA 3 cut(s) 34, 52, 73
Hpy8I GTNNAC 2 cut(s) 66, 152
HpyAV CCTTC 2 cut(s) 79, 127
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 4, 60, 66, 82, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 62
HspAI GCGC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 47, 83, 96, 102, 110, 162
Lsp1109I GCAGC 2 cut(s) 33, 160
LweI GCATC 2 cut(s) 69, 170
MaeI CTAG 2 cut(s) 141, 214
MaeII ACGT 1 cut(s) 62
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 68, 164
MluCI AATT 3 cut(s) 19, 25, 201
MnlI CCTC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 89, 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 3 cut(s) 48, 139, 175
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 188
SatI GCNGC 3 cut(s) 47, 138, 174
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 89, 98
SduI GDGCHC 2 cut(s) 68, 164
SetI ASST 3 cut(s) 65, 71, 151
SfaNI GCATC 2 cut(s) 69, 170
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 3 cut(s) 19, 25, 201
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 141, 214
StyD4I CCNGG 2 cut(s) 87, 96
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 65
TasI AATT 3 cut(s) 19, 25, 201
TauI GCSGC 1 cut(s) 140
TseI GCWGC 2 cut(s) 46, 173
VneI GTGCAC 1 cut(s) 64
XspI CTAG 2 cut(s) 141, 214
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.