MD06G1111800.v1.1

Involved in the early part of the secretory pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0004822
Physical Location & Seq
Forward (+)
25041989 .. 25043778
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1111800.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTCGGCGCTTTTCAACTTCAATTCGTTCTTGACGGTGGTGCTGCTCGTGATTTGCACGTGCACCTTCGTGAAGATGCAGTTTCCGGCCGTCCTGGAGCTAAAAAGCGGATTTCGGGGATTTTTCTGGAAGGCGGCTAGAATAGGTGAACGCCTGAGCCCTTGGGTTGCGGCTGGATGCTTTACGATGGGGATCTCAATTATATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1242

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

9.5

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1242 PF06842 10 - 43 3.5e-15 Protein of unknown function (DUF1242)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 134, 170
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 87
AcvI CACGTG 1 cut(s) 60
AgsI TTSAA 2 cut(s) 16, 22
AjnI CCWGG 1 cut(s) 93
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 87
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 30
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 95
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 3 cut(s) 44, 135, 171
BlsI GCNGC 3 cut(s) 45, 136, 172
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 66, 167
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 182
BseJI GATNNNNATC 1 cut(s) 191
BseMII CTCAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 65, 161
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 3 cut(s) 108, 134, 170
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 147
BspPI GGATC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMCI CGRYCG 1 cut(s) 90
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 182
CfoI GCGC 1 cut(s) 10
CviJI RGCY 5 cut(s) 89, 100, 137, 159, 173
CviKI_1 RGCY 5 cut(s) 89, 100, 137, 159, 173
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaiI YATR 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 44, 135, 171
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 44, 135, 171
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 44, 135, 171
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 63, 149
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 4 cut(s) 31, 49, 70, 127
Hpy8I GTNNAC 2 cut(s) 63, 149
HpyAV CCTTC 2 cut(s) 76, 124
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 57, 63, 79
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 59
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 80, 99, 107, 112, 159, 167
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 66, 167
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 59
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 65, 161
MluCI AATT 2 cut(s) 22, 198
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
NdeII GATC 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 45, 136, 172
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 68
SatI GCNGC 3 cut(s) 44, 135, 171
Sau3AI GATC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 65, 161
SetI ASST 4 cut(s) 62, 68, 102, 148
SfaNI GCATC 2 cut(s) 66, 167
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 22, 198
SsiI CCGC 3 cut(s) 108, 134, 170
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 62
TasI AATT 2 cut(s) 22, 198
TauI GCSGC 2 cut(s) 137, 173
TseI GCWGC 1 cut(s) 43
VneI GTGCAC 1 cut(s) 61
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.