Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Forward (+)

12170569 .. 12172065

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTATCAGAGTGTAACAAGTAACAACGTCGTTCCCTTGTTTGCCAAGAAGTTCGACATTATTGATAGAAATTTGAAGCAACTGAAGGAACTAGTAAAAGCAACTAACTTTGAGCAGAATACCAACATGTCGGCACTCTTCAATTTTCATGGCTTTCTAGCAGTGGTGCTGTTGGTAATCTGTACCTGCACATATGTGAAAATTGCATATCCGCCACTTCTTGTAAAGAAAGATGGGTTCCGTGGTTTATTTTGGAAGGCGGCCAGAACAGGTGAGCGCTTAAGCCCATGGGTGGCCCTGGGTTGCTTCATAATGGGCGTGTCAATTCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0031090 GO:0031984 GO:0032940 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702 GO:0071705 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

9.63

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1242	PF06842	52 - 85	1.6e-12	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	2 cut(s)	212, 260
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	184
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	76, 142
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	297
AleI	CACNNNNGTG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	2 cut(s)	261, 294
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	284
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	299
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 158
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	241, 287, 297, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	4 cut(s)	241, 287, 297, 298
BseLI	CCNNNNNNNGG	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	263, 296
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	2 cut(s)	263, 296
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	2 cut(s)	212, 260
BspANI	GGCC	2 cut(s)	263, 296
BspLI	GGNNCC	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	280
BssECI	CCNNGG	4 cut(s)	241, 287, 297, 298
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	280
BstDSI	CCRYGG	2 cut(s)	241, 287
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	263, 296
BtgI	CCRYGG	2 cut(s)	241, 287
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	127, 149, 288
CviJI	RGCY	4 cut(s)	153, 263, 285, 296
CviKI_1	RGCY	4 cut(s)	153, 263, 285, 296
CviQI	GTAC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	130, 152, 291
FaiI	YATR	7 cut(s)	128, 150, 193, 195, 208, 289, 311
FatI	CATG	3 cut(s)	126, 148, 287
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	92, 158
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	263, 296
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	130, 152, 291
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	79, 250
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	189, 206
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	130, 152, 291
HspAI	GCGC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	199, 255, 277, 284, 311
MaeI	CTAG	2 cut(s)	92, 158
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	13, 20
MboII	GAAGA	1 cut(s)	130
MluCI	AATT	4 cut(s)	70, 142, 201, 324
MseI	TTAA	2 cut(s)	281, 334
MslI	CAYNNNNRTG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	193
NlaIII	CATG	3 cut(s)	130, 152, 291
NlaIV	GGNNCC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	130
OliI	CACNNNNGTG	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	298
PciI	ACATGT	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	262
PscI	ACATGT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	295
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	281, 334
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	3 cut(s)	30, 188, 274
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	4 cut(s)	70, 142, 201, 324
SsiI	CCGC	2 cut(s)	212, 260
SspMI	CTAG	2 cut(s)	92, 158
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	70, 142, 201, 324
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	281, 334
Tru9I	TTAA	2 cut(s)	281, 334
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	137, 298
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	168
Vha464I	CTTAAG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	2 cut(s)	92, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.