Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Reverse (-)

15228840 .. 15229355

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG149100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCGATGGTTTTGATCGAGGCTTTTCGAGTTTTGTGGCGATTCTGTGTGGCCTGGCTTATGCTCTTCAACGCATTTGGAATACTGAATGAGGAGAGGTTCCTTGCTCCGAGGGGGTACACATTGCGACACAGTCAATTGTTAGCAGCACTAAGAGAACGAGATTTTAGAGGGAGAAGAGACTGGAGGAGGATTATTAAAGCTGCGCTTATATTAATTTTGAATACCGCTCGTTTCCTGAATTTTATTCTCATAGGGTTAAACACCATCTGCATTGTCACGCTACTCTTGTTCAACTCAACGATTATCAAGTTCAATTTGTATTTTGCGGTTGTATTGCTCACAATTACTCTCTGCACCTACTTGAAGATGTATGTCCCCAAGATATTTGAGGAAAGAAAACCTGGGTTTGAAGGGATTCCTTGGAAAGCAGCTAGGATAGGTGAACGCTTGAGCCCCTGGATTGCTGCTGGATGTCTTATATCTTCGATTTCAATTATGTTTACATTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

171

Amino Acids

19.95

Weight (kDa)

10.34

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yos1	PF08571	12 - 98	6.7e-12	Yos1-like
DUF1242	PF06842	111 - 142	1.3e-07	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	2 cut(s)	228, 329
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	7 cut(s)	70, 223, 295, 316, 367, 413, 495
AjnI	CCWGG	3 cut(s)	53, 403, 458
AluBI	AGCT	2 cut(s)	203, 434
AluI	AGCT	2 cut(s)	203, 434
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	146, 203, 431, 467
ApoI	RAATTY	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	158, 190, 443, 454
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	3 cut(s)	55, 405, 460
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	435, 514
BisI	GCNGC	4 cut(s)	147, 204, 432, 468
BlsI	GCNGC	4 cut(s)	148, 205, 433, 469
Bme1390I	CCNGG	3 cut(s)	55, 405, 460
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	55, 405, 460
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	472
BsaJI	CCNNGG	4 cut(s)	110, 404, 422, 458
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	3 cut(s)	55, 405, 460
BseDI	CCNNGG	4 cut(s)	110, 404, 422, 458
BseGI	GGATG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	107, 202
BseXI	GCAGC	4 cut(s)	158, 190, 443, 454
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	228, 329
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	110, 404, 422, 458
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	3 cut(s)	55, 405, 460
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	71, 172
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	3 cut(s)	55, 405, 460
BstSCI	CCNGG	3 cut(s)	53, 403, 458
BstV1I	GCAGC	4 cut(s)	158, 190, 443, 454
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	6 cut(s)	23, 53, 58, 203, 434, 456
CviKI_1	RGCY	6 cut(s)	23, 53, 58, 203, 434, 456
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	71, 172
EarI	CTCTTC	2 cut(s)	71, 172
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	53, 403, 458
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	422
FaiI	YATR	6 cut(s)	62, 212, 254, 375, 482, 500
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	362
Fnu4HI	GCNGC	4 cut(s)	147, 204, 432, 468
FokI	GGATG	1 cut(s)	486
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	147, 204, 432, 468
FspBI	CTAG	2 cut(s)	435, 514
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	147, 204, 432, 468
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	42, 418
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	120, 446, 504
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	3 cut(s)	120, 446, 504
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	273, 357
HpyF3I	CTNAG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	40, 67, 169, 251, 390, 417, 445, 456, 472
Lsp1109I	GCAGC	4 cut(s)	158, 190, 443, 454
MaeI	CTAG	2 cut(s)	435, 514
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	17
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	1 cut(s)	15
MboII	GAAGA	4 cut(s)	58, 189, 379, 477
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	6 cut(s)	137, 216, 241, 316, 345, 495
MnlI	CCTC	8 cut(s)	13, 85, 90, 105, 164, 180, 183, 385
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	3 cut(s)	198, 215, 260
MspR9I	CCNGG	3 cut(s)	55, 405, 460
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	3 cut(s)	55, 405, 460
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	42, 418
PflFI	GACNNNGTC	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	148, 205, 433, 469
PshBI	ATTAAT	1 cut(s)	215
Psp6I	CCWGG	3 cut(s)	53, 403, 458
PspGI	CCWGG	3 cut(s)	53, 403, 458
PspN4I	GGNNCC	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	198, 215, 260
SatI	GCNGC	4 cut(s)	147, 204, 432, 468
Sau3AI	GATC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	55, 405, 460
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	6 cut(s)	101, 205, 362, 406, 436, 445
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	137, 216, 241, 316, 345, 495
SsiI	CCGC	2 cut(s)	228, 329
SspMI	CTAG	2 cut(s)	435, 514
StyD4I	CCNGG	3 cut(s)	53, 403, 458
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	18, 28, 488
TasI	AATT	6 cut(s)	137, 216, 241, 316, 345, 495
TfiI	GAWTC	2 cut(s)	42, 418
Tru1I	TTAA	3 cut(s)	198, 215, 260
Tru9I	TTAA	3 cut(s)	198, 215, 260
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	4 cut(s)	146, 203, 431, 467
Tsp45I	GTSAC	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	2 cut(s)	435, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.