Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Reverse (-)

5178383 .. 5179539

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0059200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTATTTATTTTTGTTTGGCTACTATTCATTGCAGAGGAGACTAGAAAAGGAATTGGCTCTCTTTGGTGGAGCTCCCCCAGCTGCTGAGGGAGAAGCTAACGAGAATGATGAGGGAGATGTGATCCAGGGGGAAGATGAAGAAAGTGAGCCAGACGCACCAATTTCTGGTATTTTCAAAAACATTATAATGCAAACACGAATTTTTTTTTTTTTTTGTCAGTACTTGAAGCTCATGGCTGACTATCTTGATTTGGATTTTGGTATATCATACCGATTCATTTTATGCTCCTCAATATGCATTGGAGTTGACCTATTTCATGTGTTCAAATGTACAACAACTTATGACAATGGAGACATAAAAGTCACAGTGACAACAAGCGAGATCTCTCAGGAAGAGGAAATACATCCAGTTAGAAAGACAGTGGCTGTAGTGCCCGAAACAGTTGGAGCTAATAAAAAGAATAGTGTTCTTGTGAGCAAAAAGAAACCATTTAAAAAAGTTGGAAAGCGCAAATCAGGGCCAAAGATGCAAAAGAAAACAGATAAAAGGAAAGGAAAGGAAAATAACTCGAAGAGGCTTACTCTACCCTTAGCCAGTTCTTTGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

8.75

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	2 cut(s)	224, 334
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	178, 229, 328, 607
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	5 cut(s)	74, 83, 98, 232, 452
AluI	AGCT	5 cut(s)	74, 83, 98, 232, 452
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	34, 348
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	2 cut(s)	86, 428
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
Bbv12I	GWGCWC	1 cut(s)	76
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	34, 348
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	2 cut(s)	87, 592
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	410, 597
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	78, 404
BseNI	ACTGG	2 cut(s)	410, 597
BseRI	GAGGAG	2 cut(s)	52, 280
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	34, 348
BsnI	GGCC	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	76, 438
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	123, 384
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	2 cut(s)	79, 403
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	410, 597
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	123, 384
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	370, 424, 445
Bst6I	CTCTTC	2 cut(s)	390, 569
BstAUI	TGTACA	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	87, 390, 592
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	2 cut(s)	126, 387
BstMAI	GTCTC	2 cut(s)	34, 348
BstMBI	GATC	2 cut(s)	123, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 529
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	375, 429
CaiI	CAGNNNCTG	2 cut(s)	86, 428
CfoI	GCGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	223, 333
CviAII	CATG	2 cut(s)	235, 320
CviQI	GTAC	2 cut(s)	223, 333
DdeI	CTNAG	3 cut(s)	87, 390, 592
DpnI	GATC	2 cut(s)	125, 386
DpnII	GATC	2 cut(s)	123, 384
DraI	TTTAAA	1 cut(s)	496
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	390, 569
EarI	CTCTTC	2 cut(s)	390, 569
Ecl136II	GAGCTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	2 cut(s)	238, 323
FaiI	YATR	9 cut(s)	188, 236, 266, 271, 286, 298, 321, 345, 359
FatI	CATG	2 cut(s)	234, 319
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	523
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	238, 323
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	248, 392
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	370, 424, 445
HpyCH4V	TGCA	4 cut(s)	34, 193, 300, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 529
HpyF3I	CTNAG	3 cut(s)	87, 390, 592
Hsp92II	CATG	2 cut(s)	238, 323
HspAI	GCGC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	123, 384
LmnI	GCTCC	4 cut(s)	71, 79, 293, 449
LpnPI	CCDG	9 cut(s)	93, 113, 140, 153, 165, 377, 423, 504, 610
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	364, 370
MalI	GATC	2 cut(s)	125, 386
MboI	GATC	2 cut(s)	123, 384
MboII	GAAGA	4 cut(s)	146, 152, 407, 586
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	76, 438
MluCI	AATT	3 cut(s)	53, 162, 201
MmeI	TCCRAC	2 cut(s)	427, 484
MnlI	CCTC	6 cut(s)	30, 82, 106, 301, 391, 570
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	80, 529
NdeII	GATC	2 cut(s)	123, 384
NlaIII	CATG	2 cut(s)	238, 323
NmuCI	GTSAC	2 cut(s)	364, 370
NsiI	ATGCAT	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	521
PstNI	CAGNNNCTG	2 cut(s)	86, 428
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	224, 334
RsaNI	GTAC	2 cut(s)	223, 333
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	123, 384
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	76, 438
SetI	ASST	6 cut(s)	76, 85, 100, 234, 315, 454
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	53, 162, 201
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	370, 424, 445
TaqI	TCGA	1 cut(s)	572
TasI	AATT	3 cut(s)	53, 162, 201
TatI	WGTACW	2 cut(s)	222, 332
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	375, 429
TseFI	GTSAC	2 cut(s)	364, 370
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	364, 370
TspDTI	ATGAA	4 cut(s)	18, 153, 268, 308
TspRI	CASTG	2 cut(s)	375, 429
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.