Prupe.5G124600_v2.0.a1

Involved in the early part of the secretory pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0004822
Physical Location & Seq
Forward (+)
12264718 .. 12266330
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G124600.1

Sequence Viewer

Length: 213 bp
ATGTCGGCGCTTTTCAATTTCAATTCTTTTTTGACGGTGGTGCTGCTCGTGATTTGCACGTGCACGTTCTTGAAGATGCAGTTCCCGGCCGTCCTCGAGCAGAAAACTGGGTTCCGGGGATTTTTTTGGAAGGCAGCTAGAATAGGTGAACGCTTGAGCCCTTGGGTTGCTGCTGGATGCTTTACAATGGGAATTTCAATCTTATTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1242

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

9.5

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 192
AcvI CACGTG 1 cut(s) 60
AgsI TTSAA 4 cut(s) 16, 22, 73, 198
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 87
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 3 cut(s) 43, 134, 170
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 1 cut(s) 10
AsuC2I CCSGG 2 cut(s) 86, 116
AsuHPI GGTGA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 30, 146, 157
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 2 cut(s) 86, 116
BfaI CTAG 2 cut(s) 138, 211
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 3 cut(s) 44, 135, 171
BlsI GCNGC 3 cut(s) 45, 136, 172
Bme1390I CCNGG 2 cut(s) 86, 116
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 86, 116
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 66, 167
BmuI ACTGGG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 86, 116
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 115, 161
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 115, 161
BseGI GGATG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 30, 146, 157
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 86, 115
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 65, 161
BspANI GGCC 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 115, 161
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 60
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 84, 114
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 30, 146, 157
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 182
CfoI GCGC 1 cut(s) 10
CviJI RGCY 3 cut(s) 89, 137, 159
CviKI_1 RGCY 3 cut(s) 89, 137, 159
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 44, 135, 171
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 44, 135, 171
FspBI CTAG 2 cut(s) 138, 211
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 44, 135, 171
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 89
HapII CCGG 2 cut(s) 86, 115
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HpaII CCGG 2 cut(s) 86, 115
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 63, 149
Hpy188III TCNNGA 2 cut(s) 49, 70
Hpy8I GTNNAC 2 cut(s) 63, 149
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 59, 65
HpyCH4V TGCA 3 cut(s) 57, 63, 79
HpySE526I ACGT 2 cut(s) 59, 65
HspAI GCGC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 93, 99, 128, 159
Lsp1109I GCAGC 3 cut(s) 30, 146, 157
LweI GCATC 2 cut(s) 66, 167
MaeI CTAG 2 cut(s) 138, 211
MaeII ACGT 2 cut(s) 59, 65
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 65, 161
MluCI AATT 3 cut(s) 16, 22, 192
MnlI CCTC 1 cut(s) 104
MspI CCGG 2 cut(s) 86, 115
MspR9I CCNGG 2 cut(s) 86, 116
NciI CCSGG 2 cut(s) 86, 116
NlaIV GGNNCC 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 95
PkrI GCNGC 3 cut(s) 45, 136, 172
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 60
PspCI CACGTG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 95
SatI GCNGC 3 cut(s) 44, 135, 171
ScrFI CCNGG 2 cut(s) 86, 116
SduI GDGCHC 2 cut(s) 65, 161
SetI ASST 4 cut(s) 62, 68, 139, 148
SfaNI GCATC 2 cut(s) 66, 167
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 154
SmoI CTYRAG 2 cut(s) 95, 154
Sse9I AATT 3 cut(s) 16, 22, 192
SspMI CTAG 2 cut(s) 138, 211
StyD4I CCNGG 2 cut(s) 84, 114
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 62, 68
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 16, 22, 192
TseI GCWGC 3 cut(s) 43, 134, 170
VneI GTGCAC 1 cut(s) 61
XapI RAATTY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 2 cut(s) 138, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.