Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004822

Physical Location & Seq

Genomic Coordinates Reverse (-)

52320451 .. 52321907

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G026130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCGGCACTCTTCAATTTTCATGGCTTTCTAGCAGTGGTGCTGTTGGTAATCTGTACCTGCACATATGTGAAAATTGCATATCCGCCGCTTCTTGTAAAGAAAGATGGGTTCCGTGGTTTGTTTTGGAAGGCGGCCAGAATAGGTGAGCGCTTAAGCCCCTGGGTGGCCCTGGGTTGCTTCATAATGGGCGTGTCAATTCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0031090 GO:0031984 GO:0032940 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702 GO:0071705 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1242

Protein Analysis

69

Amino Acids

7.71

Weight (kDa)

9.57

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1242	PF06842	10 - 43	5.5e-13	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20165 AT5G20165 AT5G20165 AT5G20165
fragaria_vesca	FvH4_3g12470 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_4g23990 FvH4_5g11580
malus_domestica	MD06G1111800.v1.1 MD14G1133000.v1.1
prunus_persica	Prupe.5G124600_v2.0.a1
pyrus_communis	pycom06g10480
rosa_chinensis	RchiOBHm_Chr4g0430651 RchiOBHm_Chr5g0020411 RchiOBHm_Chr7g0186171
rosa_laevigata	RLG00000006959 RLG00000032528
rosa_roxburghii	Rroxscaffold_1G00057860 Rroxscaffold_3G00268360
rosa_rugosa	Rorug05G0059200
rosa_samantha	Rh5AG149900 Rh5BG149100 Rh5CG160700 Rh5DG148300 Rh7BG084900
rosa_wichuraiana	Rw4G026130 Rw7G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	3 cut(s)	86, 89, 134
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	1 cut(s)	58
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	161, 171
AleI	CACNNNNGTG	1 cut(s)	68
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	2 cut(s)	135, 168
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	158
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	163, 173
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	89, 135
BlsI	GCNGC	2 cut(s)	90, 136
Bme1390I	CCNGG	2 cut(s)	163, 173
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	163, 173
BsaJI	CCNNGG	5 cut(s)	115, 161, 162, 171, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	163, 173
BseDI	CCNNGG	5 cut(s)	115, 161, 162, 171, 172
BseLI	CCNNNNNNNGG	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	137, 170
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	2 cut(s)	137, 170
BspACI	CCGC	3 cut(s)	86, 89, 134
BspANI	GGCC	2 cut(s)	137, 170
BspLI	GGNNCC	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	115, 161, 162, 171, 172
Bst2UI	CCWGG	2 cut(s)	163, 173
Bst6I	CTCTTC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstNI	CCWGG	2 cut(s)	163, 173
BstSCI	CCNGG	2 cut(s)	161, 171
BsuRI	GGCC	2 cut(s)	137, 170
BtgI	CCRYGG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	68
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	4 cut(s)	27, 137, 159, 170
CviKI_1	RGCY	4 cut(s)	27, 137, 159, 170
CviQI	GTAC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	75
Eco47III	AGCGCT	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	161, 171
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 67, 69, 82, 185
FatI	CATG	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	89, 135
Fsp4HI	GCNGC	2 cut(s)	89, 135
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	89, 135
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	137, 170
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	63, 80
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	73, 148, 151, 158, 175, 185
MaeI	CTAG	1 cut(s)	32
MboII	GAAGA	1 cut(s)	4
MluCI	AATT	3 cut(s)	16, 75, 198
MseI	TTAA	2 cut(s)	155, 208
MslI	CAYNNNNRTG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	163, 173
MvaI	CCWGG	2 cut(s)	163, 173
NdeI	CATATG	1 cut(s)	67
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	68
PasI	CCCWGGG	2 cut(s)	162, 172
PkrI	GCNGC	2 cut(s)	90, 136
Psp6I	CCWGG	2 cut(s)	161, 171
PspGI	CCWGG	2 cut(s)	161, 171
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	155, 208
SatI	GCNGC	2 cut(s)	89, 135
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	163, 173
SetI	ASST	2 cut(s)	62, 148
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	16, 75, 198
SsiI	CCGC	3 cut(s)	86, 89, 134
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	161, 171
TasI	AATT	3 cut(s)	16, 75, 198
TauI	GCSGC	2 cut(s)	91, 137
Tru1I	TTAA	2 cut(s)	155, 208
Tru9I	TTAA	2 cut(s)	155, 208
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	11, 172
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.