RchiOBHm_Chr7g0186171

Involved in the early part of the secretory pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004822
Physical Location & Seq
Forward (+)
6124549 .. 6127238
2690 bp
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UTR
Exon/CDS
Intron
PRQ16618

Sequence Viewer

Length: 153 bp
ATGTCGGCGCTTTTCAATTTCAATTCGTTCCTGACGGTGGTGCTGCTCGTGATTTGCACGTGCACCTTCTTGAAGATGCAGTTCCCGGCCCTCCTGGAACAGAAAACTGGGTTAGTTTCGGGGATTTTTTTGGAAGGCCGCCAGAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1242

Protein Analysis

50

Amino Acids

5.64

Weight (kDa)

8.89

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1242 PF06842 10 - 43 3.9e-13 Protein of unknown function (DUF1242)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcvI CACGTG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 3 cut(s) 16, 22, 73
AjnI CCWGG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 61
AoxI GGCC 2 cut(s) 87, 136
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 65
BauI CACGAG 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 2 cut(s) 44, 139
BlsI GCNGC 2 cut(s) 45, 140
Bme1390I CCNGG 2 cut(s) 86, 95
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 86, 95
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 2 cut(s) 89, 138
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 2 cut(s) 89, 138
Bsp1286I GDGCHC 1 cut(s) 65
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 89, 138
BsrI ACTGG 1 cut(s) 112
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 84, 93
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 89, 138
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 88
CviJI RGCY 2 cut(s) 89, 138
CviKI_1 RGCY 2 cut(s) 89, 138
Eco72I CACGTG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 44, 139
Fsp4HI GCNGC 2 cut(s) 44, 139
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 44, 139
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 89, 138
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 31, 49, 70
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 76, 128
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 57, 63, 79
HpySE526I ACGT 1 cut(s) 59
HspAI GCGC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 44, 80, 93, 99, 107
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 66
MaeII ACGT 1 cut(s) 59
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 16, 22
MnlI CCTC 1 cut(s) 101
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 95
MvaI CCWGG 1 cut(s) 95
NciI CCSGG 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 45, 140
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 1 cut(s) 88
SatI GCNGC 2 cut(s) 44, 139
Sau96I GGNCC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 86, 95
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 62, 68, 152
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 2 cut(s) 16, 22
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 84, 93
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 62
TasI AATT 2 cut(s) 16, 22
TauI GCSGC 1 cut(s) 141
TseI GCWGC 1 cut(s) 43
VneI GTGCAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.