FvH4_3g15580

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012769
Physical Location & Seq
Forward (+)
9770083 .. 9771441
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15580.t1

Sequence Viewer

Length: 1101 bp
ATGGCTCCAAGTTTCACCGATGAAAACTCACTATTCAACTTTGTTGTCAGGGATGGCAATGGCGTCAAGGGCATGGTGGACTTAGGCCTATCCAAAGTACCTGAACAATACATACAACCACCTCATGAGCGTATAGTGAAGCTAAATGCAAGCTCATCACTAAATGAGCTCACACCAATCGATCTGTCAAAGCTTGATGGGGTTGATCATGAACAAGTGGCTAATGAGATCGTTAATGCTGCCGAGGTTCTTGGGTTCTTCCAAGTTGTGAACCATGGCCTGCCCCAGGAGTTGCTGGAGTCTCTGAAAGATGCTGCAAACAAGTTTTTCGGGCAAGCGCCGGGAAAGAAAGCTGCTTACCGGAAAGGTGTGAGCCCGAGCCCGTACGTGATGTACGGAACGAGCTTTGTGCCGGAGAAAGAGAAGGCATTGGAGTGGAAGGACTATGTTAGCATGGTGTACTCCAGTGATGCTGATGCTCTCAGTCACTGGCCTAATGAGTGCAAGGAAGTTGCACTTGAGTACCTTAAAACATCAATGCATATGGTAAAGAAAATAGTGAAAATCTTGATTGAGAAGCTCGGAGTGACACTGGAAGACTCGAAACTAGATGGACTCATTGGGTTAAAAATGGTGAACATGAACTATTATCCAACATGCCCTAATCCGGAGCTCACTGTTGGAGTCGGGCGTCACTCGGACATGGGAACCTTAACCGTTTTACTGCAAGATGGAATTGGTGGTTTGTATGTGAAGGTTGAAGAAGACATGAATGCTGCTGGAAAGAAAGGAGATTGGATTGAGATCCCTCCTGTCCCTGGAGCTCTGGTCATAAACATTGGTGATACATTACAGATAATTAGTAATGGGAGGTACAAGAGTGCAGAACACAGAGTACGAACTACAAGCGCTCAATCAAGAGTGTCTGTTCCGATTTTTACCATTCCAAACGCGACAGAAATAATTGGGCCGCTGCCGGAGATGGTGGCGCGTGATGGAGTGGCTCGTTACCGTGACATGGTGTTCGGAGATTATATGAACAACTTTTTTGGCAATGCACATGAGGGCAAGAAGTCCCTTGATTATGCCCGGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01110 map00940 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

40.35

Weight (kDa)

5.58

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 60 - 166 6.5e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 314 1.3e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12900
fragaria_vesca FvH4_3g15580
malus_domestica MD00G1188900.v1.1 MD05G1221300.v1.1
prunus_persica Prupe.4G138300_v2.0.a1
pyrus_communis pycom05g20470
rosa_chinensis RchiOBHm_Chr5g0026211
rosa_laevigata RLG00000032912
rosa_multiflora Rmu_co8420971.1_g000001 Rmu_sc0002909.1_g000002 Rmu_sc0005061.1_g000001
rosa_roxburghii Rroxscaffold_1G00053100
rosa_rugosa Rorug05G0091600
rosa_samantha Rh5AG184500 Rh5BG181400 Rh5CG200500 Rh5DG183100
rosa_wichuraiana Rw5G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 953, 991
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 1 cut(s) 971
AclWI GGATC 1 cut(s) 799
AcyI GRCGYC 2 cut(s) 63, 691
AfaI GTAC 7 cut(s) 99, 386, 395, 461, 524, 875, 897
AfeI AGCGCT 1 cut(s) 910
AfiI CCNNNNNNNGG 4 cut(s) 286, 667, 818, 1018
AgsI TTSAA 2 cut(s) 37, 761
AjnI CCWGG 2 cut(s) 285, 817
AluBI AGCT 9 cut(s) 142, 153, 169, 193, 353, 405, 580, 673, 824
AluI AGCT 9 cut(s) 142, 153, 169, 193, 353, 405, 580, 673, 824
Alw21I GWGCWC 3 cut(s) 171, 675, 826
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 799
AlwNI CAGNNNCTG 1 cut(s) 489
Ama87I CYCGRG 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 667
Aor51HI AGCGCT 1 cut(s) 910
AoxI GGCC 4 cut(s) 85, 277, 491, 968
ApeKI GCWGC 5 cut(s) 239, 314, 353, 776, 973
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
AspLEI GCGC 3 cut(s) 340, 911, 991
AspS9I GGNCC 1 cut(s) 968
AsuC2I CCSGG 2 cut(s) 342, 1090
AsuHPI GGTGA 3 cut(s) 7, 646, 854
AvaI CYCGRG 1 cut(s) 376
BaeI ACNNNNGTAYC 4 cut(s) 506, 539, 865, 898
BanII GRGCYC 5 cut(s) 171, 377, 383, 675, 826
BbsI GAAGAC 2 cut(s) 603, 771
Bbv12I GWGCWC 3 cut(s) 171, 675, 826
BbvI GCAGC 5 cut(s) 226, 301, 340, 763, 960
BccI CCATC 6 cut(s) 47, 191, 605, 725, 976, 989
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 2 cut(s) 287, 819
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 342, 1090
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 608
BfoI RGCGCY 2 cut(s) 341, 912
BisI GCNGC 6 cut(s) 240, 315, 354, 777, 971, 974
BlsI GCNGC 6 cut(s) 241, 316, 355, 778, 972, 975
Bme1390I CCNGG 4 cut(s) 287, 342, 819, 1090
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 968
BmiI GGNNCC 2 cut(s) 6, 709
BmrFI CCNGG 4 cut(s) 287, 342, 819, 1090
BmsI GCATC 3 cut(s) 301, 460, 466
BpiI GAAGAC 2 cut(s) 603, 771
BpmI CTGGAG 3 cut(s) 317, 448, 840
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 342, 1090
Bsa29I ATCGAT 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 803
BsaHI GRCGYC 2 cut(s) 63, 691
BsaJI CCNNGG 4 cut(s) 243, 274, 285, 817
BsaWI WCCGGW 2 cut(s) 360, 667
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 667, 818, 1018
Bse1I ACTGG 3 cut(s) 465, 494, 597
Bse3DI GCAATG 2 cut(s) 64, 1060
Bse8I GATNNNNATC 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 2 cut(s) 287, 819
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 243, 274, 285, 817
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 803
BseLI CCNNNNNNNGG 4 cut(s) 286, 667, 818, 1018
BseMI GCAATG 2 cut(s) 64, 1060
BseMII CTCAG 1 cut(s) 496
BseNI ACTGG 3 cut(s) 465, 494, 597
BseXI GCAGC 5 cut(s) 226, 301, 340, 763, 960
BsgI GTGCAG 1 cut(s) 903
Bsh1236I CGCG 2 cut(s) 953, 991
BshFI GGCC 4 cut(s) 87, 279, 493, 970
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 3 cut(s) 171, 675, 826
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 6 cut(s) 341, 361, 413, 668, 977, 1090
BsiWI CGTACG 1 cut(s) 384
BslFI GGGAC 2 cut(s) 800, 1060
BslI CCNNNNNNNGG 4 cut(s) 286, 667, 818, 1018
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 800, 1060
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 4 cut(s) 87, 279, 493, 970
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 5 cut(s) 171, 377, 383, 675, 826
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 4 cut(s) 181, 205, 228, 804
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 1 cut(s) 971
BspANI GGCC 4 cut(s) 87, 279, 493, 970
BspCNI CTCAG 1 cut(s) 495
BspDI ATCGAT 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 2 cut(s) 953, 991
BspHI TCATGA 2 cut(s) 124, 208
BspLI GGNNCC 2 cut(s) 6, 709
BspPI GGATC 1 cut(s) 799
BsrDI GCAATG 2 cut(s) 64, 1060
BsrI ACTGG 3 cut(s) 465, 494, 597
BssECI CCNNGG 4 cut(s) 243, 274, 285, 817
BssMI GATC 4 cut(s) 181, 205, 228, 804
BssNI GRCGYC 2 cut(s) 63, 691
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 287, 819
Bst4CI ACNGT 3 cut(s) 679, 718, 1013
BstACI GRCGYC 2 cut(s) 63, 691
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 3 cut(s) 151, 281, 336
BstDEI CTNAG 2 cut(s) 82, 482
BstDSI CCRYGG 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 2 cut(s) 953, 991
BstH2I RGCGCY 2 cut(s) 341, 912
BstHHI GCGC 3 cut(s) 340, 911, 991
BstKTI GATC 4 cut(s) 184, 208, 231, 807
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 4 cut(s) 181, 205, 228, 804
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 287, 819
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 4 cut(s) 285, 340, 817, 1088
BstUI CGCG 2 cut(s) 953, 991
BstV1I GCAGC 5 cut(s) 226, 301, 340, 763, 960
BstV2I GAAGAC 2 cut(s) 603, 771
BstX2I RGATCY 1 cut(s) 804
BstYI RGATCY 1 cut(s) 804
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 4 cut(s) 87, 279, 493, 970
BsuTUI ATCGAT 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 4 cut(s) 472, 487, 590, 675
Cac8I GCNNGC 3 cut(s) 151, 281, 336
CaiI CAGNNNCTG 1 cut(s) 489
CciI TCATGA 2 cut(s) 124, 208
CfoI GCGC 3 cut(s) 340, 911, 991
Cfr13I GGNCC 1 cut(s) 968
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 2 cut(s) 52, 680
Csp6I GTAC 7 cut(s) 98, 385, 394, 460, 523, 874, 896
CviQI GTAC 7 cut(s) 98, 385, 394, 460, 523, 874, 896
DdeI CTNAG 2 cut(s) 82, 482
DpnI GATC 4 cut(s) 183, 207, 230, 806
DpnII GATC 4 cut(s) 181, 205, 228, 804
Ecl136II GAGCTC 3 cut(s) 169, 673, 824
Eco130I CCWWGG 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 87
Eco24I GRGCYC 5 cut(s) 171, 377, 383, 675, 826
Eco47III AGCGCT 1 cut(s) 910
Eco53kI GAGCTC 3 cut(s) 169, 673, 824
Eco88I CYCGRG 1 cut(s) 376
EcoICRI GAGCTC 3 cut(s) 169, 673, 824
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 285, 817
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 5 cut(s) 171, 377, 383, 675, 826
ErhI CCWWGG 1 cut(s) 274
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 2 cut(s) 800, 1060
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 240, 315, 354, 777, 971, 974
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 5 cut(s) 171, 377, 383, 675, 826
Fsp4HI GCNGC 6 cut(s) 240, 315, 354, 777, 971, 974
FspBI CTAG 1 cut(s) 608
GlaI GCGC 3 cut(s) 339, 910, 990
GluI GCNGC 6 cut(s) 240, 315, 354, 777, 971, 974
GsuI CTGGAG 3 cut(s) 317, 448, 840
HaeII RGCGCY 2 cut(s) 341, 912
HaeIII GGCC 4 cut(s) 87, 279, 493, 970
HapII CCGG 6 cut(s) 341, 361, 413, 668, 977, 1090
HgaI GACGC 2 cut(s) 52, 680
HhaI GCGC 3 cut(s) 340, 911, 991
Hin1I GRCGYC 2 cut(s) 63, 691
Hin6I GCGC 3 cut(s) 338, 909, 989
HinP1I GCGC 3 cut(s) 338, 909, 989
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 299, 599, 615, 684
HpaII CCGG 6 cut(s) 341, 361, 413, 668, 977, 1090
HphI GGTGA 3 cut(s) 7, 646, 854
Hpy166II GTNNAC 4 cut(s) 79, 271, 460, 637
Hpy188I TCNGA 5 cut(s) 306, 584, 700, 933, 1028
Hpy188III TCNNGA 5 cut(s) 125, 209, 568, 668, 918
Hpy8I GTNNAC 4 cut(s) 79, 271, 460, 637
HpyAV CCTTC 3 cut(s) 418, 433, 748
HpyCH4III ACNGT 3 cut(s) 679, 718, 1013
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 8 cut(s) 149, 317, 504, 515, 541, 727, 884, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 82, 482
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 2 cut(s) 63, 691
HspAI GCGC 3 cut(s) 338, 909, 989
Kpn2I TCCGGA 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 181, 205, 228, 804
LmnI GCTCC 3 cut(s) 10, 670, 821
Lsp1109I GCAGC 5 cut(s) 226, 301, 340, 763, 960
LweI GCATC 3 cut(s) 301, 460, 466
MaeI CTAG 1 cut(s) 608
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 5 cut(s) 485, 586, 692, 1007, 1013
MalI GATC 4 cut(s) 183, 207, 230, 806
MboI GATC 4 cut(s) 181, 205, 228, 804
MboII GAAGA 4 cut(s) 250, 608, 773, 776
MflI RGATCY 1 cut(s) 804
MhlI GDGCHC 5 cut(s) 171, 377, 383, 675, 826
MluCI AATT 3 cut(s) 735, 858, 963
MlyI GAGTC 4 cut(s) 308, 593, 609, 693
MmeI TCCRAC 2 cut(s) 661, 677
MnlI CCTC 5 cut(s) 132, 238, 819, 864, 1057
Mph1103I ATGCAT 1 cut(s) 543
MroI TCCGGA 1 cut(s) 667
MseI TTAA 5 cut(s) 234, 528, 626, 713, 1095
MslI CAYNNNNRTG 1 cut(s) 433
MspA1I CMGCKG 1 cut(s) 973
MspI CCGG 6 cut(s) 341, 361, 413, 668, 977, 1090
MspR9I CCNGG 4 cut(s) 287, 342, 819, 1090
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 287, 819
MvnI CGCG 2 cut(s) 953, 991
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 2 cut(s) 342, 1090
NcoI CCATGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 543
NdeII GATC 4 cut(s) 181, 205, 228, 804
NlaIV GGNNCC 2 cut(s) 6, 709
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 4 cut(s) 485, 586, 692, 1013
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 1 cut(s) 660
PagI TCATGA 2 cut(s) 124, 208
PceI AGGCCT 1 cut(s) 87
PctI GAATGC 1 cut(s) 778
Pfl23II CGTACG 1 cut(s) 384
PkrI GCNGC 6 cut(s) 241, 316, 355, 778, 972, 975
PleI GAGTC 4 cut(s) 307, 593, 609, 692
PpsI GAGTC 4 cut(s) 307, 593, 609, 692
Ppu21I YACGTR 1 cut(s) 388
Psp124BI GAGCTC 3 cut(s) 171, 675, 826
Psp6I CCWGG 2 cut(s) 285, 817
PspGI CCWGG 2 cut(s) 285, 817
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 6, 709
PspPI GGNCC 1 cut(s) 968
PsrI GAACNNNNNNTAC 4 cut(s) 96, 128, 879, 911
PstNI CAGNNNCTG 1 cut(s) 489
PsuI RGATCY 1 cut(s) 804
RsaI GTAC 7 cut(s) 99, 386, 395, 461, 524, 875, 897
RsaNI GTAC 7 cut(s) 98, 385, 394, 460, 523, 874, 896
RseI CAYNNNNRTG 1 cut(s) 433
SacI GAGCTC 3 cut(s) 171, 675, 826
SaqAI TTAA 5 cut(s) 234, 528, 626, 713, 1095
SatI GCNGC 6 cut(s) 240, 315, 354, 777, 971, 974
Sau3AI GATC 4 cut(s) 181, 205, 228, 804
Sau96I GGNCC 1 cut(s) 968
SchI GAGTC 4 cut(s) 308, 593, 609, 693
ScrFI CCNGG 4 cut(s) 287, 342, 819, 1090
SduI GDGCHC 5 cut(s) 171, 377, 383, 675, 826
SfaNI GCATC 3 cut(s) 301, 460, 466
SmiMI CAYNNNNRTG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 3 cut(s) 735, 858, 963
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 971
SspMI CTAG 1 cut(s) 608
SstI GAGCTC 3 cut(s) 171, 675, 826
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 285, 340, 817, 1088
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 679, 718, 1013
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 180, 602
TasI AATT 3 cut(s) 735, 858, 963
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 973
Tru1I TTAA 5 cut(s) 234, 528, 626, 713, 1095
Tru9I TTAA 5 cut(s) 234, 528, 626, 713, 1095
TscAI CASTG 4 cut(s) 472, 494, 597, 682
TseFI GTSAC 4 cut(s) 485, 586, 692, 1013
TseI GCWGC 5 cut(s) 239, 314, 353, 776, 973
Tsp45I GTSAC 4 cut(s) 485, 586, 692, 1013
TspDTI ATGAA 5 cut(s) 36, 225, 656, 785, 1052
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 4 cut(s) 472, 494, 597, 682
XagI CCTNNNNNAGG 1 cut(s) 284
XceI RCATGY 1 cut(s) 660
XspI CTAG 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.