Rmu_co8420971.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8420971.1
OG0012769
Physical Location & Seq
Forward (+)
158 .. 1239
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8420971.1_g000001.1.cds

Sequence Viewer

Length: 687 bp
atggagttgctcgagtcactgaaagatgctgcaaacaatttcttcgagcaagcgccggagaagaaagctgcttaccgaaaaggtgtgagcccgagccgatacgtgaagtatggaacgagttttgtgccggagaaagagaaggctttggagtggaaggactatgttagcatggtgtactctagtgatgctgatgctctcagtcactggcctaacgagtgcaaggaagttgcacttgagtaccttaaaacatcaatgcatatggtaaagcaaatagtgaaaactttgattgagaagctcggagtgacacttgaggactcaaaactagatggactcgttgggttaaagatggttgaagaagacatgaatgctggaaagaaaggagagtggatcgagatccgtcctatccctggagctttggtcatcaacattggtgatacattacagatacttagtaatgggagatataaaagtgccgaacacagagttcgaactacaaacgctcaagtgtctgtttcgatatttaccattccaaatccaacagaaataattgggccgctgccggaggtggtggcgcctgatggagaggctcgttaccgtgacatggtttttggagattatatgaacaactttttcggcaatgcacatgagggcaagaagtctctggattatgcccagattaataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01110 map00940 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

228

Amino Acids

25.61

Weight (kDa)

5.52

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12900
fragaria_vesca FvH4_3g15580
malus_domestica MD00G1188900.v1.1 MD05G1221300.v1.1
prunus_persica Prupe.4G138300_v2.0.a1
pyrus_communis pycom05g20470
rosa_chinensis RchiOBHm_Chr5g0026211
rosa_laevigata RLG00000032912
rosa_multiflora Rmu_co8420971.1_g000001 Rmu_sc0002909.1_g000002 Rmu_sc0005061.1_g000001
rosa_roxburghii Rroxscaffold_1G00053100
rosa_rugosa Rorug05G0091600
rosa_samantha Rh5AG184500 Rh5BG181400 Rh5CG200500 Rh5DG183100
rosa_wichuraiana Rw5G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AciI CCGC 1 cut(s) 554
AclWI GGATC 2 cut(s) 388, 395
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 2 cut(s) 176, 239
AfiI CCNNNNNNNGG 2 cut(s) 407, 601
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 3 cut(s) 68, 295, 413
AluI AGCT 3 cut(s) 68, 295, 413
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 2 cut(s) 388, 395
AlwNI CAGNNNCTG 1 cut(s) 204
Ama87I CYCGRG 2 cut(s) 11, 91
AoxI GGCC 2 cut(s) 206, 551
ApeKI GCWGC 3 cut(s) 29, 68, 556
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AseI ATTAAT 1 cut(s) 678
AspLEI GCGC 2 cut(s) 55, 574
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 11, 91
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 16, 55, 543
BccI CCATC 3 cut(s) 320, 340, 572
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 2 cut(s) 180, 323
BfoI RGCGCY 2 cut(s) 56, 575
BisI GCNGC 4 cut(s) 30, 69, 554, 557
BlsI GCNGC 4 cut(s) 31, 70, 555, 558
Bme1390I CCNGG 1 cut(s) 408
BmeT110I CYCGRG 2 cut(s) 11, 91
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 3 cut(s) 16, 175, 181
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 3 cut(s) 254, 329, 486
BsaAI YACGTR 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 601
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 407, 601
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 16, 55, 543
BshFI GGCC 2 cut(s) 208, 553
BshNI GGYRCC 1 cut(s) 571
BsiHKCI CYCGRG 2 cut(s) 11, 91
BsiSI CCGG 3 cut(s) 56, 128, 560
BslI CCNNNNNNNGG 2 cut(s) 407, 601
BsmAI GTCTC 1 cut(s) 663
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 208, 553
BsoBI CYCGRG 2 cut(s) 11, 91
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 387, 393
BspACI CCGC 1 cut(s) 554
BspANI GGCC 2 cut(s) 208, 553
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 573
BspPI GGATC 2 cut(s) 388, 395
BspT104I TTCGAA 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 387, 393
BssNI GRCGYC 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 596
BstACI GRCGYC 1 cut(s) 572
BstBAI YACGTR 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 197, 449
BstH2I RGCGCY 2 cut(s) 56, 575
BstHHI GCGC 2 cut(s) 55, 574
BstKTI GATC 2 cut(s) 390, 396
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 387, 393
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 16, 55, 543
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BsuRI GGCC 2 cut(s) 208, 553
BtsIMutI CAGTG 2 cut(s) 17, 202
Cac8I GCNNGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 204
CfoI GCGC 2 cut(s) 55, 574
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 175, 238
CviAII CATG 4 cut(s) 169, 361, 601, 644
CviJI RGCY 9 cut(s) 68, 90, 96, 143, 208, 295, 413, 553, 587
CviKI_1 RGCY 9 cut(s) 68, 90, 96, 143, 208, 295, 413, 553, 587
CviQI GTAC 2 cut(s) 175, 238
DdeI CTNAG 2 cut(s) 197, 449
DinI GGCGCC 1 cut(s) 573
DpnI GATC 2 cut(s) 389, 395
DpnII GATC 2 cut(s) 387, 393
Eco24I GRGCYC 1 cut(s) 92
Eco88I CYCGRG 2 cut(s) 11, 91
EcoRII CCWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 573
EheI GGCGCC 1 cut(s) 573
FaeI CATG 4 cut(s) 172, 364, 604, 647
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 4 cut(s) 168, 360, 600, 643
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 30, 69, 554, 557
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 30, 69, 554, 557
FspBI CTAG 2 cut(s) 180, 323
GlaI GCGC 2 cut(s) 54, 573
GluI GCNGC 4 cut(s) 30, 69, 554, 557
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 2 cut(s) 56, 575
HaeIII GGCC 2 cut(s) 208, 553
HapII CCGG 3 cut(s) 56, 128, 560
HhaI GCGC 2 cut(s) 55, 574
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 4 cut(s) 172, 364, 604, 647
Hin6I GCGC 2 cut(s) 53, 572
HinP1I GCGC 2 cut(s) 53, 572
HinfI GANTC 3 cut(s) 14, 314, 330
HpaII CCGG 3 cut(s) 56, 128, 560
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 2 cut(s) 391, 662
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 133, 148
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 32, 219, 230, 256, 641
HpyF3I CTNAG 2 cut(s) 197, 449
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 4 cut(s) 172, 364, 604, 647
HspAI GCGC 2 cut(s) 53, 572
KasI GGCGCC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 387, 393
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 9 cut(s) 69, 141, 190, 354, 393, 420, 573, 588, 647
Lsp1109I GCAGC 3 cut(s) 16, 55, 543
LweI GCATC 3 cut(s) 16, 175, 181
MaeI CTAG 2 cut(s) 180, 323
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 5 cut(s) 15, 200, 301, 590, 596
MalI GATC 2 cut(s) 389, 395
MboI GATC 2 cut(s) 387, 393
MboII GAAGA 4 cut(s) 34, 73, 365, 368
MflI RGATCY 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 37, 546, 682
Mly113I GGCGCC 1 cut(s) 572
MlyI GAGTC 3 cut(s) 23, 308, 324
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 4 cut(s) 304, 556, 577, 640
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 3 cut(s) 243, 341, 678
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 3 cut(s) 56, 128, 560
MspR9I CCNGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 408
NarI GGCGCC 1 cut(s) 572
NdeI CATATG 1 cut(s) 258
NdeII GATC 2 cut(s) 387, 393
NlaIII CATG 4 cut(s) 172, 364, 604, 647
NlaIV GGNNCC 1 cut(s) 573
NmuCI GTSAC 4 cut(s) 15, 200, 301, 596
NsiI ATGCAT 1 cut(s) 258
NspV TTCGAA 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 11
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 31, 70, 555, 558
PleI GAGTC 3 cut(s) 22, 308, 324
PluTI GGCGCC 1 cut(s) 575
PpsI GAGTC 3 cut(s) 22, 308, 324
Ppu21I YACGTR 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 1 cut(s) 551
PspXI VCTCGAGB 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 2 cut(s) 176, 239
RsaNI GTAC 2 cut(s) 175, 238
SaqAI TTAA 3 cut(s) 243, 341, 678
SatI GCNGC 4 cut(s) 30, 69, 554, 557
Sau3AI GATC 2 cut(s) 387, 393
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 3 cut(s) 23, 308, 324
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 70, 85, 105, 243, 297, 415, 567
SfaNI GCATC 3 cut(s) 16, 175, 181
SfoI GGCGCC 1 cut(s) 573
Sfr274I CTCGAG 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 487
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 4 cut(s) 11, 233, 308, 501
SmoI CTYRAG 4 cut(s) 11, 233, 308, 501
Sse9I AATT 3 cut(s) 37, 546, 682
SsiI CCGC 1 cut(s) 554
SspDI GGCGCC 1 cut(s) 571
SspMI CTAG 2 cut(s) 180, 323
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 105
TaqI TCGA 5 cut(s) 12, 45, 390, 487, 515
TasI AATT 3 cut(s) 37, 546, 682
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 556
Tru1I TTAA 3 cut(s) 243, 341, 678
Tru9I TTAA 3 cut(s) 243, 341, 678
TscAI CASTG 2 cut(s) 24, 209
TseFI GTSAC 4 cut(s) 15, 200, 301, 596
TseI GCWGC 3 cut(s) 29, 68, 556
Tsp45I GTSAC 4 cut(s) 15, 200, 301, 596
TspDTI ATGAA 2 cut(s) 377, 635
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 24, 209
VspI ATTAAT 1 cut(s) 678
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 2 cut(s) 180, 323
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.