Rh5AG184500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012769
Physical Location & Seq
Forward (+)
21087372 .. 21089059
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG184500.1

Sequence Viewer

Length: 960 bp
ATGGCTCCAAGTTTCAATGATGAAAACTCACTATTCAACTTTGTTGTCAGGGATGGCAATGGTGTGAAGGGCATGGTGGACTTAGGCCTATCCAAAGTACCTGAACAATACATACAACCACCTCATGAGCGTATACTGAAGCTTAATGCAAGCTCACTAAATGAGCTCAGACCAATCGATCTGTCTAAGCTTGATGCGGTTGATCATGAACAAGTGGCTAATGAGATCGTTAATGCTGCCGAGCAAGCGCCGAAGAAGAAAGCTGCTTACCGAAAAGGTGTGAGCCCGAGCCGATACGTGAAGTATGGAACGATTTTTGTGCCGGAGAAAGAGAAGGCTTTGGAGTGGAAGGACTATGTTAGCATGGTGTACTCTAGTGATGCTGATGCTCTCAGGCCTAACGAGTGCAAGGAAGTTGCACTTGAGTACCTTAAAACATCAATGCATATGGTAAAGCAAATAGTGAAAACTTTGATTGAGAAGCTCGGAGTGACACTTGAGGACTCAAAACTAGATGGACTCGTTGGGTTAAAGATGCTTACTGTCGGAGTTGGGCGTCACTCGGACATGGGCACCTTAACCGTTTTACTGCAAGATGGAATTGGTGGTTTGTATGTGAAGGTTGAAGAAGACATGAATGCAGGAAAGAAAGGAGAGTGGATCGAGATCCGTCCTATCCCTGGGGCTTTGGTCATCAACATTGGTGATACATTACAGATACTTAGTAATGGGAGATATAAAAGTGCCGAACACAGAGTTCGAACTACAAACGCTCAAGTGTCTGTTTCGATATTTACCATTCCAAATCCAACAGAAATAATTGGGCCGCTGCCGGAGGTGGTGGCGCCTGATGGAGAGGCTCGTTACCGTGACATGGTTTTTGGAGATTATATGAACAACTTTTTCGGCAATGCACATGAGGGCAAGAAGTCTCTGGATTATGCCCAGATTAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01110 map00940 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.35

Weight (kDa)

5.79

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 180 - 265 1.3e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12900
fragaria_vesca FvH4_3g15580
malus_domestica MD00G1188900.v1.1 MD05G1221300.v1.1
prunus_persica Prupe.4G138300_v2.0.a1
pyrus_communis pycom05g20470
rosa_chinensis RchiOBHm_Chr5g0026211
rosa_laevigata RLG00000032912
rosa_multiflora Rmu_co8420971.1_g000001 Rmu_sc0002909.1_g000002 Rmu_sc0005061.1_g000001
rosa_roxburghii Rroxscaffold_1G00053100
rosa_rugosa Rorug05G0091600
rosa_samantha Rh5AG184500 Rh5BG181400 Rh5CG200500 Rh5DG183100
rosa_wichuraiana Rw5G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 572, 844
AccI GTMKAC 1 cut(s) 133
AciI CCGC 2 cut(s) 197, 827
AclWI GGATC 2 cut(s) 661, 668
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 2 cut(s) 556, 845
AfaI GTAC 3 cut(s) 99, 371, 428
AfiI CCNNNNNNNGG 2 cut(s) 680, 874
AgsI TTSAA 3 cut(s) 16, 37, 626
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 6 cut(s) 142, 153, 166, 190, 263, 484
AluI AGCT 6 cut(s) 142, 153, 166, 190, 263, 484
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 2 cut(s) 661, 668
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 85, 395, 824
ApeKI GCWGC 3 cut(s) 236, 263, 829
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AseI ATTAAT 1 cut(s) 951
AspLEI GCGC 2 cut(s) 250, 847
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 716
AsuII TTCGAA 1 cut(s) 760
AvaI CYCGRG 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 575
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BanI GGYRCC 2 cut(s) 572, 844
BanII GRGCYC 2 cut(s) 168, 287
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 223, 250, 816
BccI CCATC 4 cut(s) 47, 509, 590, 845
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 936
BfaI CTAG 2 cut(s) 375, 512
BfoI RGCGCY 2 cut(s) 251, 848
BisI GCNGC 4 cut(s) 237, 264, 827, 830
BlsI GCNGC 4 cut(s) 238, 265, 828, 831
Bme1390I CCNGG 1 cut(s) 681
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 3 cut(s) 6, 574, 846
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 4 cut(s) 184, 370, 376, 525
BpiI GAAGAC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 760
BpuEI CTTGAG 3 cut(s) 443, 518, 759
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 665
BsaHI GRCGYC 2 cut(s) 556, 845
BsaJI CCNNGG 2 cut(s) 679, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 874
Bse3DI GCAATG 2 cut(s) 64, 916
Bse8I GATNNNNATC 1 cut(s) 665
BseBI CCWGG 1 cut(s) 681
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 679, 680
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 2 cut(s) 680, 874
BseMI GCAATG 2 cut(s) 64, 916
BseMII CTCAG 2 cut(s) 181, 406
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 3 cut(s) 223, 250, 816
BshFI GGCC 3 cut(s) 87, 397, 826
BshNI GGYRCC 2 cut(s) 572, 844
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 323, 833
BslI CCNNNNNNNGG 2 cut(s) 680, 874
BsmAI GTCTC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 87, 397, 826
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 3 cut(s) 168, 287, 575
Bsp143I GATC 5 cut(s) 178, 202, 225, 660, 666
BspACI CCGC 2 cut(s) 197, 827
BspANI GGCC 3 cut(s) 87, 397, 826
BspCNI CTCAG 2 cut(s) 180, 405
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 2 cut(s) 124, 205
BspLI GGNNCC 3 cut(s) 6, 574, 846
BspPI GGATC 2 cut(s) 661, 668
BspT104I TTCGAA 1 cut(s) 760
BspT107I GGYRCC 2 cut(s) 572, 844
BsrDI GCAATG 2 cut(s) 64, 916
BssECI CCNNGG 2 cut(s) 679, 680
BssMI GATC 5 cut(s) 178, 202, 225, 660, 666
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 2 cut(s) 556, 845
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 3 cut(s) 544, 583, 869
BstACI GRCGYC 2 cut(s) 556, 845
BstBAI YACGTR 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 151, 246
BstDEI CTNAG 5 cut(s) 82, 167, 186, 392, 722
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 2 cut(s) 251, 848
BstHHI GCGC 2 cut(s) 250, 847
BstKTI GATC 5 cut(s) 181, 205, 228, 663, 669
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 5 cut(s) 178, 202, 225, 660, 666
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 681
BstSCI CCNGG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 575
BstV1I GCAGC 3 cut(s) 223, 250, 816
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BstZ17I GTATAC 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 3 cut(s) 87, 397, 826
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 151, 246
CciI TCATGA 2 cut(s) 124, 205
CfoI GCGC 2 cut(s) 250, 847
Cfr13I GGNCC 1 cut(s) 824
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 545
Csp6I GTAC 3 cut(s) 98, 370, 427
CviAII CATG 8 cut(s) 73, 125, 206, 364, 568, 634, 874, 917
CviQI GTAC 3 cut(s) 98, 370, 427
DdeI CTNAG 5 cut(s) 82, 167, 186, 392, 722
DinI GGCGCC 1 cut(s) 846
DpnI GATC 5 cut(s) 180, 204, 227, 662, 668
DpnII GATC 5 cut(s) 178, 202, 225, 660, 666
Ecl136II GAGCTC 1 cut(s) 166
Eco147I AGGCCT 2 cut(s) 87, 397
Eco24I GRGCYC 2 cut(s) 168, 287
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 679
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 168, 287
EgeI GGCGCC 1 cut(s) 846
EheI GGCGCC 1 cut(s) 846
FaeI CATG 8 cut(s) 76, 128, 209, 367, 571, 637, 877, 920
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 8 cut(s) 72, 124, 205, 363, 567, 633, 873, 916
FauNDI CATATG 1 cut(s) 447
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 237, 264, 827, 830
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 168, 287
Fsp4HI GCNGC 4 cut(s) 237, 264, 827, 830
FspBI CTAG 2 cut(s) 375, 512
GlaI GCGC 2 cut(s) 249, 846
GluI GCNGC 4 cut(s) 237, 264, 827, 830
HaeII RGCGCY 2 cut(s) 251, 848
HaeIII GGCC 3 cut(s) 87, 397, 826
HapII CCGG 2 cut(s) 323, 833
HgaI GACGC 1 cut(s) 545
HhaI GCGC 2 cut(s) 250, 847
Hin1I GRCGYC 2 cut(s) 556, 845
Hin1II CATG 8 cut(s) 76, 128, 209, 367, 571, 637, 877, 920
Hin6I GCGC 2 cut(s) 248, 845
HinP1I GCGC 2 cut(s) 248, 845
HindIII AAGCTT 2 cut(s) 140, 188
HinfI GANTC 2 cut(s) 503, 519
HpaII CCGG 2 cut(s) 323, 833
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 3 cut(s) 79, 134, 370
Hpy188I TCNGA 4 cut(s) 170, 488, 548, 565
Hpy188III TCNNGA 4 cut(s) 125, 206, 664, 935
Hpy8I GTNNAC 3 cut(s) 79, 134, 370
HpyAV CCTTC 4 cut(s) 61, 328, 343, 613
HpyCH4III ACNGT 3 cut(s) 544, 583, 869
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 7 cut(s) 149, 408, 419, 445, 592, 641, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 5 cut(s) 82, 167, 186, 392, 722
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 556, 845
Hsp92II CATG 8 cut(s) 76, 128, 209, 367, 571, 637, 877, 920
HspAI GCGC 2 cut(s) 248, 845
KasI GGCGCC 1 cut(s) 844
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 5 cut(s) 178, 202, 225, 660, 666
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 223, 250, 816
LweI GCATC 4 cut(s) 184, 370, 376, 525
MaeI CTAG 2 cut(s) 375, 512
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 490, 557, 863, 869
MalI GATC 5 cut(s) 180, 204, 227, 662, 668
MboI GATC 5 cut(s) 178, 202, 225, 660, 666
MboII GAAGA 4 cut(s) 265, 268, 638, 641
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 3 cut(s) 168, 287, 575
MluCI AATT 3 cut(s) 600, 819, 955
Mly113I GGCGCC 1 cut(s) 845
MlyI GAGTC 2 cut(s) 497, 513
MmeI TCCRAC 2 cut(s) 526, 833
MnlI CCTC 5 cut(s) 132, 493, 829, 850, 913
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 6 cut(s) 144, 231, 432, 530, 578, 951
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 2 cut(s) 323, 833
MspR9I CCNGG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 681
MwoI GCNNNNNNNGC 1 cut(s) 245
NarI GGCGCC 1 cut(s) 845
NdeI CATATG 1 cut(s) 447
NdeII GATC 5 cut(s) 178, 202, 225, 660, 666
NlaIII CATG 8 cut(s) 76, 128, 209, 367, 571, 637, 877, 920
NlaIV GGNNCC 3 cut(s) 6, 574, 846
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 3 cut(s) 490, 557, 869
NsiI ATGCAT 1 cut(s) 447
NspV TTCGAA 1 cut(s) 760
PagI TCATGA 2 cut(s) 124, 205
PasI CCCWGGG 1 cut(s) 680
PceI AGGCCT 2 cut(s) 87, 397
PctI GAATGC 1 cut(s) 643
PkrI GCNGC 4 cut(s) 238, 265, 828, 831
PleI GAGTC 2 cut(s) 497, 513
PluTI GGCGCC 1 cut(s) 848
PpsI GAGTC 2 cut(s) 497, 513
Ppu21I YACGTR 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 3 cut(s) 6, 574, 846
PspPI GGNCC 1 cut(s) 824
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PsuI RGATCY 1 cut(s) 666
RsaI GTAC 3 cut(s) 99, 371, 428
RsaNI GTAC 3 cut(s) 98, 370, 427
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 6 cut(s) 144, 231, 432, 530, 578, 951
SatI GCNGC 4 cut(s) 237, 264, 827, 830
Sau3AI GATC 5 cut(s) 178, 202, 225, 660, 666
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 2 cut(s) 497, 513
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 3 cut(s) 168, 287, 575
SfaNI GCATC 4 cut(s) 184, 370, 376, 525
SfoI GGCGCC 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 760
SmlI CTYRAG 3 cut(s) 422, 497, 774
SmoI CTYRAG 3 cut(s) 422, 497, 774
Sse9I AATT 3 cut(s) 600, 819, 955
SseBI AGGCCT 2 cut(s) 87, 397
SsiI CCGC 2 cut(s) 197, 827
SspDI GGCGCC 1 cut(s) 844
SspMI CTAG 2 cut(s) 375, 512
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 2 cut(s) 87, 397
StyD4I CCNGG 1 cut(s) 679
TaaI ACNGT 3 cut(s) 544, 583, 869
TaiI ACGT 1 cut(s) 300
TaqI TCGA 4 cut(s) 177, 663, 760, 788
TasI AATT 3 cut(s) 600, 819, 955
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 829
Tru1I TTAA 6 cut(s) 144, 231, 432, 530, 578, 951
Tru9I TTAA 6 cut(s) 144, 231, 432, 530, 578, 951
TseFI GTSAC 3 cut(s) 490, 557, 869
TseI GCWGC 3 cut(s) 236, 263, 829
Tsp45I GTSAC 3 cut(s) 490, 557, 869
TspDTI ATGAA 4 cut(s) 36, 222, 650, 908
TspGWI ACGGA 1 cut(s) 659
VspI ATTAAT 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 375, 512
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.