Prupe.4G138300_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012769
Physical Location & Seq
Forward (+)
7704936 .. 7707336
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G138300.1

Sequence Viewer

Length: 1113 bp
ATGGCTCCAAGTTTCGAAGATGGAAACTCACTGTTCAACTTTGTTGTCAGAGATGGCAATGGTGTGAAGGGCATGGTGGACTTGGGCCTATCGAAAGTGCCTGAACAATACATACAACCGCCCCATGAGCGCATAGTGAAGCTAAATGCAATCTCAGCAGATGAGCTCTCACCAATCGATTTGTCAAAGCTAGATGGGCCTGACCATGACCAAGTAGCAGATGCCATTGTTAATGCTGCTGAGGTTCTTGGGTTCTTCCAAGTTGTGAACCACGGCATGCCTGTGGAGTTGCTAGAGTCCCTTAAAAATGCTGCACATGATTTCTTCGGGCAGGCGCCGGAGAAGAAGGCTGCTTATCGGAAAGGCGTGAGCCCTAGCCCATACGTGAAGTATGGGACGAGCTTTGTGCCCGAGAAGGAGAAGGCATTGGAGTGGAAGGACTATGTAAGCATGGTGTATTCCAGTGATGTTGATGCTCTCACTTATTGGCCTAACGAGTGCAAGGAAGTTGCACTTGAGTACCTGAAGTTTTCTATGGATATGGTAAAGAAAATACTGAAAGTCTTGATTGCAAAGCTTGGAGTGACACTAGAAGACTCAAAAATTGATGCGCTCATTGGCTTGAGGATGGTTAACATGAATTTCTACCCAACATGCCCTGATCCAGAACTCACTGTCGGAGTTGGGCGTCACTCGGACATGGGCACCTTAACTGTGCTACTGCAAGATGGAATTGGTGGTTTGTATGTGAAAGTTGAAGAAGACATGGATGCTGGAAGAAAGGGAGAGTGGATTGAGATCTCACCTGTCCCTGGTGCTCTGGTCATCAACATTGGAGATACATTACAGATACTTAGTAATGGAAGGTACAAAAGTGCTGAACACAGAGTGCGTACTACAAGCACCAAATCAAGAGTGTCTGTTCCAATTTTCACCATCCCAAAGCAAACAGAAAGAATTGGGCCACTGCCTGAGGTGGTGAAGAATGATGGAGTTGCTCGTTACCGTGAGGTGGTGTTTGAAGATTATATGAGCAACTTTTTTGGCAATGCGCATGAGGGGAAGAAGTCTCTTGAGTATGCACAGATTATTATTAGCTCCACCTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01110 map00940 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

371

Amino Acids

40.93

Weight (kDa)

5.25

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012769)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12900
fragaria_vesca FvH4_3g15580
malus_domestica MD00G1188900.v1.1 MD05G1221300.v1.1
prunus_persica Prupe.4G138300_v2.0.a1
pyrus_communis pycom05g20470
rosa_chinensis RchiOBHm_Chr5g0026211
rosa_laevigata RLG00000032912
rosa_multiflora Rmu_co8420971.1_g000001 Rmu_sc0002909.1_g000002 Rmu_sc0005061.1_g000001
rosa_roxburghii Rroxscaffold_1G00053100
rosa_rugosa Rorug05G0091600
rosa_samantha Rh5AG184500 Rh5BG181400 Rh5CG200500 Rh5DG183100
rosa_wichuraiana Rw5G016730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1053
AccB1I GGYRCC 2 cut(s) 334, 704
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 545
AcyI GRCGYC 2 cut(s) 335, 688
AdeI CACNNNGTG 1 cut(s) 889
AfaI GTAC 3 cut(s) 521, 869, 895
AfiI CCNNNNNNNGG 2 cut(s) 812, 1012
AgsI TTSAA 3 cut(s) 37, 758, 1022
AjnI CCWGG 1 cut(s) 811
AluBI AGCT 6 cut(s) 142, 166, 190, 402, 577, 1098
AluI AGCT 6 cut(s) 142, 166, 190, 402, 577, 1098
Alw21I GWGCWC 2 cut(s) 168, 820
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 4 cut(s) 85, 197, 488, 962
ApeKI GCWGC 3 cut(s) 236, 311, 350
ApoI RAATTY 1 cut(s) 640
AspLEI GCGC 4 cut(s) 132, 337, 613, 1054
AspS9I GGNCC 3 cut(s) 85, 197, 962
AsuHPI GGTGA 4 cut(s) 162, 795, 925, 991
AsuII TTCGAA 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 972
BaeGI GKGCMC 2 cut(s) 411, 707
BaeI ACNNNNGTAYC 4 cut(s) 503, 536, 859, 892
BanI GGYRCC 2 cut(s) 334, 704
BanII GRGCYC 2 cut(s) 168, 374
BbsI GAAGAC 2 cut(s) 600, 768
Bbv12I GWGCWC 2 cut(s) 168, 820
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 223, 298, 337
BccI CCATC 7 cut(s) 14, 47, 188, 622, 722, 944, 983
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 4 cut(s) 191, 293, 375, 590
BfoI RGCGCY 1 cut(s) 338
BglII AGATCT 1 cut(s) 798
BisI GCNGC 3 cut(s) 237, 312, 351
BlsI GCNGC 3 cut(s) 238, 313, 352
Bme1390I CCNGG 1 cut(s) 813
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 85, 197, 962
BmiI GGNNCC 3 cut(s) 6, 336, 706
BmrFI CCNGG 1 cut(s) 813
BmsI GCATC 4 cut(s) 211, 463, 598, 760
BpiI GAAGAC 2 cut(s) 600, 768
Bpu10I CCTNAGC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 3 cut(s) 536, 643, 1094
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 797
BsaHI GRCGYC 2 cut(s) 335, 688
BsaJI CCNNGG 2 cut(s) 271, 811
Bsc4I CCNNNNNNNGG 2 cut(s) 812, 1012
Bse1I ACTGG 1 cut(s) 462
Bse21I CCTNAGG 1 cut(s) 972
Bse3DI GCAATG 2 cut(s) 64, 1054
Bse8I GATNNNNATC 1 cut(s) 797
BseBI CCWGG 1 cut(s) 813
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 271, 811
BseGI GGATG 3 cut(s) 633, 775, 936
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 2 cut(s) 812, 1012
BseMI GCAATG 2 cut(s) 64, 1054
BseMII CTCAG 3 cut(s) 168, 231, 963
BseNI ACTGG 1 cut(s) 462
BseSI GKGCMC 2 cut(s) 411, 707
BseXI GCAGC 3 cut(s) 223, 298, 337
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 87, 199, 490, 964
BshNI GGYRCC 2 cut(s) 334, 704
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 168, 820
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 3 cut(s) 283, 409, 794
BslI CCNNNNNNNGG 2 cut(s) 812, 1012
BsmAI GTCTC 1 cut(s) 1074
BsmFI GGGAC 3 cut(s) 283, 409, 794
BsnI GGCC 4 cut(s) 87, 199, 490, 964
BsoBI CYCGRG 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 5 cut(s) 168, 374, 411, 707, 820
Bsp143I GATC 2 cut(s) 661, 798
BspACI CCGC 1 cut(s) 119
BspANI GGCC 4 cut(s) 87, 199, 490, 964
BspCNI CTCAG 3 cut(s) 167, 232, 964
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 6, 336, 706
BspPI GGATC 1 cut(s) 656
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 2 cut(s) 334, 704
BsrDI GCAATG 2 cut(s) 64, 1054
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 271, 811
BssMI GATC 2 cut(s) 661, 798
BssNI GRCGYC 2 cut(s) 335, 688
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 4 cut(s) 33, 676, 715, 1007
BstACI GRCGYC 2 cut(s) 335, 688
BstBAI YACGTR 1 cut(s) 385
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 278, 333
BstDEI CTNAG 4 cut(s) 154, 240, 854, 972
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 3 cut(s) 633, 775, 936
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 4 cut(s) 132, 337, 613, 1054
BstKTI GATC 2 cut(s) 664, 801
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 2 cut(s) 661, 798
BstMWI GCNNNNNNNGC 3 cut(s) 127, 155, 196
BstNI CCWGG 1 cut(s) 813
BstNSI RCATGY 2 cut(s) 280, 657
BstSCI CCNGG 1 cut(s) 811
BstSLI GKGCMC 2 cut(s) 411, 707
BstV1I GCAGC 3 cut(s) 223, 298, 337
BstV2I GAAGAC 2 cut(s) 600, 768
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 972
BsuRI GGCC 4 cut(s) 87, 199, 490, 964
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 3 cut(s) 633, 775, 936
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 4 cut(s) 29, 469, 672, 965
Cac8I GCNNGC 2 cut(s) 278, 333
CfoI GCGC 4 cut(s) 132, 337, 613, 1054
Cfr13I GGNCC 3 cut(s) 85, 197, 962
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 520, 868, 894
CviQI GTAC 3 cut(s) 520, 868, 894
DdeI CTNAG 4 cut(s) 154, 240, 854, 972
DinI GGCGCC 1 cut(s) 336
DpnI GATC 2 cut(s) 663, 800
DpnII GATC 2 cut(s) 661, 798
DraIII CACNNNGTG 1 cut(s) 889
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 168, 374
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 811
EcoT38I GRGCYC 2 cut(s) 168, 374
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 3 cut(s) 283, 409, 794
Fnu4HI GCNGC 3 cut(s) 237, 312, 351
FokI GGATG 3 cut(s) 640, 782, 923
FriOI GRGCYC 2 cut(s) 168, 374
Fsp4HI GCNGC 3 cut(s) 237, 312, 351
FspAI RTGCGCAY 1 cut(s) 1053
FspBI CTAG 4 cut(s) 191, 293, 375, 590
FspI TGCGCA 1 cut(s) 1053
GlaI GCGC 4 cut(s) 131, 336, 612, 1053
GluI GCNGC 3 cut(s) 237, 312, 351
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 4 cut(s) 87, 199, 490, 964
HapII CCGG 1 cut(s) 338
HgaI GACGC 1 cut(s) 677
HhaI GCGC 4 cut(s) 132, 337, 613, 1054
Hin1I GRCGYC 2 cut(s) 335, 688
Hin6I GCGC 4 cut(s) 130, 335, 611, 1052
HinP1I GCGC 4 cut(s) 130, 335, 611, 1052
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 2 cut(s) 296, 596
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 1 cut(s) 338
HphI GGTGA 4 cut(s) 162, 795, 925, 991
Hpy166II GTNNAC 3 cut(s) 79, 268, 634
Hpy188I TCNGA 4 cut(s) 50, 360, 680, 697
Hpy188III TCNNGA 4 cut(s) 565, 665, 912, 1073
Hpy8I GTNNAC 3 cut(s) 79, 268, 634
HpyAV CCTTC 6 cut(s) 61, 340, 409, 415, 430, 858
HpyCH4III ACNGT 4 cut(s) 33, 676, 715, 1007
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 7 cut(s) 149, 314, 501, 512, 572, 724, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 155, 196
HpyF3I CTNAG 4 cut(s) 154, 240, 854, 972
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 2 cut(s) 335, 688
HspAI GCGC 4 cut(s) 130, 335, 611, 1052
KasI GGCGCC 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 2 cut(s) 661, 798
LmnI GCTCC 2 cut(s) 10, 1103
Lsp1109I GCAGC 3 cut(s) 223, 298, 337
LweI GCATC 4 cut(s) 211, 463, 598, 760
MaeI CTAG 4 cut(s) 191, 293, 375, 590
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 3 cut(s) 583, 689, 1001
MalI GATC 2 cut(s) 663, 800
MboI GATC 2 cut(s) 661, 798
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 5 cut(s) 168, 374, 411, 707, 820
MluCI AATT 5 cut(s) 603, 640, 732, 927, 957
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 2 cut(s) 305, 590
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 5 cut(s) 235, 618, 967, 1003, 1051
MseI TTAA 4 cut(s) 231, 303, 633, 710
MslI CAYNNNNRTG 2 cut(s) 281, 430
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 813
MwoI GCNNNNNNNGC 3 cut(s) 127, 155, 196
NarI GGCGCC 1 cut(s) 335
NdeII GATC 2 cut(s) 661, 798
NlaIV GGNNCC 3 cut(s) 6, 336, 706
NmuCI GTSAC 2 cut(s) 583, 689
NsbI TGCGCA 1 cut(s) 1053
NspI RCATGY 2 cut(s) 280, 657
NspV TTCGAA 1 cut(s) 15
PaeI GCATGC 1 cut(s) 280
PkrI GCNGC 3 cut(s) 238, 313, 352
PleI GAGTC 2 cut(s) 304, 590
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 2 cut(s) 304, 590
Ppu21I YACGTR 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 811
PspGI CCWGG 1 cut(s) 811
PspN4I GGNNCC 3 cut(s) 6, 336, 706
PspPI GGNCC 3 cut(s) 85, 197, 962
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 3 cut(s) 521, 869, 895
RsaNI GTAC 3 cut(s) 520, 868, 894
RseI CAYNNNNRTG 2 cut(s) 281, 430
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 231, 303, 633, 710
SatI GCNGC 3 cut(s) 237, 312, 351
Sau3AI GATC 2 cut(s) 661, 798
Sau96I GGNCC 3 cut(s) 85, 197, 962
SchI GAGTC 2 cut(s) 305, 590
ScrFI CCNGG 1 cut(s) 813
SduI GDGCHC 5 cut(s) 168, 374, 411, 707, 820
SfaNI GCATC 4 cut(s) 211, 463, 598, 760
SfoI GGCGCC 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 281, 430
SmlI CTYRAG 3 cut(s) 515, 622, 1073
SmoI CTYRAG 3 cut(s) 515, 622, 1073
SphI GCATGC 1 cut(s) 280
Sse9I AATT 5 cut(s) 603, 640, 732, 927, 957
SsiI CCGC 1 cut(s) 119
SspDI GGCGCC 1 cut(s) 334
SspMI CTAG 4 cut(s) 191, 293, 375, 590
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 811
TaaI ACNGT 4 cut(s) 33, 676, 715, 1007
TaiI ACGT 1 cut(s) 387
TaqI TCGA 3 cut(s) 15, 92, 177
TasI AATT 5 cut(s) 603, 640, 732, 927, 957
Tru1I TTAA 4 cut(s) 231, 303, 633, 710
Tru9I TTAA 4 cut(s) 231, 303, 633, 710
TscAI CASTG 4 cut(s) 36, 469, 679, 972
TseFI GTSAC 2 cut(s) 583, 689
TseI GCWGC 3 cut(s) 236, 311, 350
Tsp45I GTSAC 2 cut(s) 583, 689
TspDTI ATGAA 1 cut(s) 653
TspRI CASTG 4 cut(s) 36, 469, 679, 972
XapI RAATTY 1 cut(s) 640
XceI RCATGY 2 cut(s) 280, 657
XspI CTAG 4 cut(s) 191, 293, 375, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.