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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53930 |
| fragaria_vesca | FvH4_3g19480 FvH4_3g19480 FvH4_3g19480 |
| malus_domestica | MD03G1231500.v1.1 MD11G1252600.v1.1 |
| prunus_persica | Prupe.4G176400_v2.0.a1 |
| pyrus_communis | pycom03g17910 pycom11g22400 |
| rosa_chinensis | RchiOBHm_Chr5g0032741 |
| rosa_laevigata | RLG00000033423 |
| rosa_multiflora | Rmu_ssc0000293.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00047360 Rroxscaffold_1G00047820 |
| rosa_rugosa | Rorug05G0133500 Rorug05G0133500 |
| rosa_samantha | Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900 |
| rosa_wichuraiana | Rw5G020730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1279, 1358 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 908 |
| AccII | CGCG | 3 cut(s) | 36, 132, 229 |
| AciI | CCGC | 2 cut(s) | 633, 658 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcoI | YGGCCR | 2 cut(s) | 3, 202 |
| AcuI | CTGAAG | 1 cut(s) | 966 |
| AcvI | CACGTG | 1 cut(s) | 317 |
| AdeI | CACNNNGTG | 1 cut(s) | 1151 |
| AfaI | GTAC | 1 cut(s) | 1770 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 373, 908, 1190, 1813 |
| AflII | CTTAAG | 2 cut(s) | 1054, 1829 |
| AgsI | TTSAA | 3 cut(s) | 1030, 1172, 1322 |
| AhlI | ACTAGT | 1 cut(s) | 401 |
| AjnI | CCWGG | 2 cut(s) | 167, 1147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 163, 195 |
| AluBI | AGCT | 9 cut(s) | 174, 192, 429, 869, 944, 963, 1160, 1289, 1779 |
| AluI | AGCT | 9 cut(s) | 174, 192, 429, 869, 944, 963, 1160, 1289, 1779 |
| Alw21I | GWGCWC | 2 cut(s) | 871, 1519 |
| Alw26I | GTCTC | 5 cut(s) | 309, 1040, 1287, 1344, 1366 |
| Alw44I | GTGCAC | 1 cut(s) | 1515 |
| AlwI | GGATC | 1 cut(s) | 105 |
| AoxI | GGCC | 3 cut(s) | 3, 202, 937 |
| ApaLI | GTGCAC | 1 cut(s) | 1515 |
| ApeKI | GCWGC | 1 cut(s) | 1463 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1463, 1495 |
| AseI | ATTAAT | 1 cut(s) | 954 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1085, 1167 |
| AspA2I | CCTAGG | 1 cut(s) | 383 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AspS9I | GGNCC | 3 cut(s) | 937, 1272, 1661 |
| AsuHPI | GGTGA | 6 cut(s) | 473, 611, 647, 844, 1133, 1786 |
| AsuNHI | GCTAGC | 1 cut(s) | 1427 |
| AvaII | GGWCC | 2 cut(s) | 1272, 1661 |
| AvrII | CCTAGG | 1 cut(s) | 383 |
| AxyI | CCTNAGG | 1 cut(s) | 1539 |
| BaeGI | GKGCMC | 2 cut(s) | 720, 1519 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 223, 871 |
| BbrPI | CACGTG | 1 cut(s) | 317 |
| BbsI | GAAGAC | 3 cut(s) | 690, 890, 1742 |
| Bbv12I | GWGCWC | 2 cut(s) | 871, 1519 |
| BbvI | GCAGC | 1 cut(s) | 1450 |
| BccI | CCATC | 6 cut(s) | 30, 194, 693, 926, 1619, 1709 |
| BceAI | ACGGC | 2 cut(s) | 189, 351 |
| BciT130I | CCWGG | 2 cut(s) | 169, 1149 |
| BciVI | GTATCC | 1 cut(s) | 685 |
| BclI | TGATCA | 3 cut(s) | 739, 985, 1249 |
| BcoDI | GTCTC | 5 cut(s) | 309, 1040, 1287, 1344, 1366 |
| BcuI | ACTAGT | 1 cut(s) | 401 |
| BfrI | CTTAAG | 2 cut(s) | 1054, 1829 |
| BfuI | GTATCC | 1 cut(s) | 685 |
| BglII | AGATCT | 3 cut(s) | 275, 1005, 1039 |
| BisI | GCNGC | 1 cut(s) | 1464 |
| BlnI | CCTAGG | 1 cut(s) | 383 |
| BlsI | GCNGC | 1 cut(s) | 1465 |
| Bme1390I | CCNGG | 2 cut(s) | 169, 1149 |
| Bme18I | GGWCC | 2 cut(s) | 1272, 1661 |
| BmgT120I | GGNCC | 3 cut(s) | 937, 1272, 1661 |
| BmiI | GGNNCC | 4 cut(s) | 365, 520, 938, 1273 |
| BmrFI | CCNGG | 2 cut(s) | 169, 1149 |
| BmsI | GCATC | 4 cut(s) | 344, 833, 871, 1740 |
| BmtI | GCTAGC | 1 cut(s) | 1431 |
| BpiI | GAAGAC | 3 cut(s) | 690, 890, 1742 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1223, 1255 |
| BpmI | CTGGAG | 3 cut(s) | 1064, 1269, 1695 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1710 |
| BpuEI | CTTGAG | 2 cut(s) | 196, 518 |
| BsaAI | YACGTR | 1 cut(s) | 317 |
| BsaI | GGTCTC | 1 cut(s) | 1287 |
| BsaJI | CCNNGG | 4 cut(s) | 51, 383, 828, 1185 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 163, 193, 858, 888 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 373, 908, 1190, 1813 |
| Bse1I | ACTGG | 2 cut(s) | 1123, 1663 |
| Bse21I | CCTNAGG | 1 cut(s) | 1539 |
| Bse3DI | GCAATG | 2 cut(s) | 649, 1648 |
| BseBI | CCWGG | 2 cut(s) | 169, 1149 |
| BseDI | CCNNGG | 4 cut(s) | 51, 383, 828, 1185 |
| BseGI | GGATG | 9 cut(s) | 47, 166, 205, 513, 824, 934, 1212, 1720, 1791 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 373, 908, 1190, 1813 |
| BseMI | GCAATG | 2 cut(s) | 649, 1648 |
| BseMII | CTCAG | 4 cut(s) | 165, 186, 540, 1553 |
| BseNI | ACTGG | 2 cut(s) | 1123, 1663 |
| BseRI | GAGGAG | 5 cut(s) | 314, 376, 568, 664, 1834 |
| BseSI | GKGCMC | 2 cut(s) | 720, 1519 |
| BseXI | GCAGC | 1 cut(s) | 1450 |
| BsgI | GTGCAG | 2 cut(s) | 607, 1449 |
| Bsh1236I | CGCG | 3 cut(s) | 36, 132, 229 |
| Bsh1285I | CGRYCG | 1 cut(s) | 227 |
| BshFI | GGCC | 3 cut(s) | 5, 204, 939 |
| BsiEI | CGRYCG | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 2 cut(s) | 871, 1519 |
| BslFI | GGGAC | 3 cut(s) | 559, 1285, 1603 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 373, 908, 1190, 1813 |
| BsmAI | GTCTC | 5 cut(s) | 309, 1040, 1287, 1344, 1366 |
| BsmBI | CGTCTC | 2 cut(s) | 1040, 1344 |
| BsmFI | GGGAC | 3 cut(s) | 559, 1285, 1603 |
| BsnI | GGCC | 3 cut(s) | 5, 204, 939 |
| Bso31I | GGTCTC | 1 cut(s) | 1287 |
| Bsp1286I | GDGCHC | 4 cut(s) | 223, 720, 871, 1519 |
| Bsp143I | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| Bsp68I | TCGCGA | 1 cut(s) | 132 |
| BspACI | CCGC | 2 cut(s) | 633, 658 |
| BspANI | GGCC | 3 cut(s) | 5, 204, 939 |
| BspCNI | CTCAG | 4 cut(s) | 164, 187, 541, 1552 |
| BspFNI | CGCG | 3 cut(s) | 36, 132, 229 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 4 cut(s) | 365, 520, 938, 1273 |
| BspOI | GCTAGC | 1 cut(s) | 1431 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspTI | CTTAAG | 2 cut(s) | 1054, 1829 |
| BspTNI | GGTCTC | 1 cut(s) | 1287 |
| BsrDI | GCAATG | 2 cut(s) | 649, 1648 |
| BsrI | ACTGG | 2 cut(s) | 1123, 1663 |
| BssECI | CCNNGG | 4 cut(s) | 51, 383, 828, 1185 |
| BssMI | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| BssT1I | CCWWGG | 3 cut(s) | 51, 383, 1185 |
| Bst2UI | CCWGG | 2 cut(s) | 169, 1149 |
| Bst4CI | ACNGT | 5 cut(s) | 92, 776, 1051, 1360, 1582 |
| Bst6I | CTCTTC | 7 cut(s) | 19, 62, 254, 266, 320, 353, 720 |
| BstAFI | CTTAAG | 2 cut(s) | 1054, 1829 |
| BstBAI | YACGTR | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 1 cut(s) | 1429 |
| BstDEI | CTNAG | 5 cut(s) | 151, 195, 549, 1539, 1710 |
| BstEII | GGTNACC | 1 cut(s) | 1555 |
| BstF5I | GGATG | 9 cut(s) | 47, 166, 205, 513, 824, 934, 1212, 1720, 1791 |
| BstFNI | CGCG | 3 cut(s) | 36, 132, 229 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 8 cut(s) | 113, 227, 278, 742, 988, 1008, 1042, 1252 |
| BstMAI | GTCTC | 5 cut(s) | 309, 1040, 1287, 1344, 1366 |
| BstMBI | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| BstMCI | CGRYCG | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 291, 639, 1729, 1831 |
| BstNI | CCWGG | 2 cut(s) | 169, 1149 |
| BstPI | GGTNACC | 1 cut(s) | 1555 |
| BstSCI | CCNGG | 2 cut(s) | 167, 1147 |
| BstSLI | GKGCMC | 2 cut(s) | 720, 1519 |
| BstUI | CGCG | 3 cut(s) | 36, 132, 229 |
| BstV1I | GCAGC | 1 cut(s) | 1450 |
| BstV2I | GAAGAC | 3 cut(s) | 690, 890, 1742 |
| BstX2I | RGATCY | 4 cut(s) | 110, 275, 1005, 1039 |
| BstYI | RGATCY | 4 cut(s) | 110, 275, 1005, 1039 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1539 |
| BsuI | GTATCC | 1 cut(s) | 685 |
| BsuRI | GGCC | 3 cut(s) | 5, 204, 939 |
| BtgZI | GCGATG | 1 cut(s) | 147 |
| BtsCI | GGATG | 9 cut(s) | 47, 166, 205, 513, 824, 934, 1212, 1720, 1791 |
| BtsI | GCAGTG | 3 cut(s) | 292, 301, 1526 |
| BtsIMutI | CAGTG | 3 cut(s) | 292, 301, 1526 |
| BtuMI | TCGCGA | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 1 cut(s) | 1429 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 1 cut(s) | 231 |
| Cfr13I | GGNCC | 3 cut(s) | 937, 1272, 1661 |
| CseI | GACGC | 1 cut(s) | 884 |
| CsiI | ACCWGGT | 1 cut(s) | 1147 |
| Csp6I | GTAC | 1 cut(s) | 1769 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1174, 1209 |
| CviAII | CATG | 3 cut(s) | 743, 892, 989 |
| CviQI | GTAC | 1 cut(s) | 1769 |
| DdeI | CTNAG | 5 cut(s) | 151, 195, 549, 1539, 1710 |
| DpnI | GATC | 8 cut(s) | 112, 226, 277, 741, 987, 1007, 1041, 1251 |
| DpnII | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| DraIII | CACNNNGTG | 1 cut(s) | 1151 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1279, 1358 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1279, 1358 |
| EaeI | YGGCCR | 2 cut(s) | 3, 202 |
| Eam1104I | CTCTTC | 7 cut(s) | 19, 62, 254, 266, 320, 353, 720 |
| EarI | CTCTTC | 7 cut(s) | 19, 62, 254, 266, 320, 353, 720 |
| Ecl136II | GAGCTC | 1 cut(s) | 869 |
| Eco130I | CCWWGG | 3 cut(s) | 51, 383, 1185 |
| Eco24I | GRGCYC | 2 cut(s) | 223, 871 |
| Eco31I | GGTCTC | 1 cut(s) | 1287 |
| Eco32I | GATATC | 1 cut(s) | 1237 |
| Eco47I | GGWCC | 2 cut(s) | 1272, 1661 |
| Eco53kI | GAGCTC | 1 cut(s) | 869 |
| Eco57I | CTGAAG | 1 cut(s) | 966 |
| Eco72I | CACGTG | 1 cut(s) | 317 |
| Eco81I | CCTNAGG | 1 cut(s) | 1539 |
| Eco91I | GGTNACC | 1 cut(s) | 1555 |
| EcoICRI | GAGCTC | 1 cut(s) | 869 |
| EcoO65I | GGTNACC | 1 cut(s) | 1555 |
| EcoRII | CCWGG | 2 cut(s) | 167, 1147 |
| EcoRV | GATATC | 1 cut(s) | 1237 |
| EcoT14I | CCWWGG | 3 cut(s) | 51, 383, 1185 |
| EcoT38I | GRGCYC | 2 cut(s) | 223, 871 |
| ErhI | CCWWGG | 3 cut(s) | 51, 383, 1185 |
| Esp3I | CGTCTC | 2 cut(s) | 1040, 1344 |
| FaeI | CATG | 3 cut(s) | 746, 895, 992 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 855, 887 |
| FaqI | GGGAC | 3 cut(s) | 559, 1285, 1603 |
| FatI | CATG | 3 cut(s) | 742, 891, 988 |
| FauNDI | CATATG | 1 cut(s) | 736 |
| FbaI | TGATCA | 3 cut(s) | 739, 985, 1249 |
| Fnu4HI | GCNGC | 1 cut(s) | 1464 |
| FokI | GGATG | 9 cut(s) | 34, 173, 212, 520, 811, 941, 1219, 1727, 1778 |
| FriOI | GRGCYC | 2 cut(s) | 223, 871 |
| Fsp4HI | GCNGC | 1 cut(s) | 1464 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GluI | GCNGC | 1 cut(s) | 1464 |
| GsuI | CTGGAG | 3 cut(s) | 1064, 1269, 1695 |
| HaeIII | GGCC | 3 cut(s) | 5, 204, 939 |
| HgaI | GACGC | 1 cut(s) | 884 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin1II | CATG | 3 cut(s) | 746, 895, 992 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HphI | GGTGA | 6 cut(s) | 473, 611, 647, 844, 1133, 1786 |
| Hpy166II | GTNNAC | 3 cut(s) | 314, 1517, 1789 |
| Hpy8I | GTNNAC | 3 cut(s) | 314, 1517, 1789 |
| Hpy99I | CGWCG | 1 cut(s) | 132 |
| HpyAV | CCTTC | 7 cut(s) | 112, 765, 857, 941, 1057, 1262, 1680 |
| HpyCH4III | ACNGT | 5 cut(s) | 92, 776, 1051, 1360, 1582 |
| HpyCH4IV | ACGT | 3 cut(s) | 316, 1478, 1513 |
| HpyCH4V | TGCA | 8 cut(s) | 588, 824, 854, 1154, 1466, 1517, 1531, 1723 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 291, 639, 1729, 1831 |
| HpyF3I | CTNAG | 5 cut(s) | 151, 195, 549, 1539, 1710 |
| HpySE526I | ACGT | 3 cut(s) | 316, 1478, 1513 |
| Hsp92II | CATG | 3 cut(s) | 746, 895, 992 |
| HspAI | GCGC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 3 cut(s) | 739, 985, 1249 |
| Kzo9I | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| LmnI | GCTCC | 5 cut(s) | 171, 363, 426, 789, 866 |
| Lsp1109I | GCAGC | 1 cut(s) | 1450 |
| LweI | GCATC | 4 cut(s) | 344, 833, 871, 1740 |
| MabI | ACCWGGT | 1 cut(s) | 1147 |
| MaeII | ACGT | 3 cut(s) | 316, 1478, 1513 |
| MaeIII | GTNAC | 5 cut(s) | 98, 920, 1114, 1555, 1603 |
| MalI | GATC | 8 cut(s) | 112, 226, 277, 741, 987, 1007, 1041, 1251 |
| MboI | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| MflI | RGATCY | 4 cut(s) | 110, 275, 1005, 1039 |
| MhlI | GDGCHC | 4 cut(s) | 223, 720, 871, 1519 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 592, 955, 1017, 1172, 1328 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 5 cut(s) | 311, 428, 482, 583, 625 |
| MmeI | TCCRAC | 1 cut(s) | 1412 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1085, 1167 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 954, 993, 1055, 1830 |
| MslI | CAYNNNNRTG | 1 cut(s) | 993 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 2 cut(s) | 1054, 1829 |
| MspR9I | CCNGG | 2 cut(s) | 169, 1149 |
| MvaI | CCWGG | 2 cut(s) | 169, 1149 |
| MvnI | CGCG | 3 cut(s) | 36, 132, 229 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 291, 639, 1729, 1831 |
| NdeI | CATATG | 1 cut(s) | 736 |
| NdeII | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| NheI | GCTAGC | 1 cut(s) | 1427 |
| NlaIII | CATG | 3 cut(s) | 746, 895, 992 |
| NlaIV | GGNNCC | 4 cut(s) | 365, 520, 938, 1273 |
| NmuCI | GTSAC | 3 cut(s) | 98, 920, 1603 |
| NruI | TCGCGA | 1 cut(s) | 132 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1085, 1167 |
| PfeI | GAWTC | 6 cut(s) | 137, 164, 1163, 1178, 1295, 1504 |
| PflFI | GACNNNGTC | 1 cut(s) | 1741 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 908 |
| PfoI | TCCNGGA | 1 cut(s) | 167 |
| PkrI | GCNGC | 1 cut(s) | 1465 |
| Ple19I | CGATCG | 1 cut(s) | 227 |
| PleI | GAGTC | 5 cut(s) | 310, 427, 481, 582, 624 |
| PmaCI | CACGTG | 1 cut(s) | 317 |
| PmlI | CACGTG | 1 cut(s) | 317 |
| PpsI | GAGTC | 5 cut(s) | 310, 427, 481, 582, 624 |
| Ppu21I | YACGTR | 1 cut(s) | 317 |
| PshBI | ATTAAT | 1 cut(s) | 954 |
| Psp124BI | GAGCTC | 1 cut(s) | 871 |
| Psp6I | CCWGG | 2 cut(s) | 167, 1147 |
| PspCI | CACGTG | 1 cut(s) | 317 |
| PspEI | GGTNACC | 1 cut(s) | 1555 |
| PspGI | CCWGG | 2 cut(s) | 167, 1147 |
| PspN4I | GGNNCC | 4 cut(s) | 365, 520, 938, 1273 |
| PspPI | GGNCC | 3 cut(s) | 937, 1272, 1661 |
| PsuI | RGATCY | 4 cut(s) | 110, 275, 1005, 1039 |
| PsyI | GACNNNGTC | 1 cut(s) | 1741 |
| PvuI | CGATCG | 1 cut(s) | 227 |
| RruI | TCGCGA | 1 cut(s) | 132 |
| RsaI | GTAC | 1 cut(s) | 1770 |
| RsaNI | GTAC | 1 cut(s) | 1769 |
| RseI | CAYNNNNRTG | 1 cut(s) | 993 |
| SacI | GAGCTC | 1 cut(s) | 871 |
| SaqAI | TTAA | 4 cut(s) | 954, 993, 1055, 1830 |
| SatI | GCNGC | 1 cut(s) | 1464 |
| Sau3AI | GATC | 8 cut(s) | 110, 224, 275, 739, 985, 1005, 1039, 1249 |
| Sau96I | GGNCC | 3 cut(s) | 937, 1272, 1661 |
| SchI | GAGTC | 5 cut(s) | 311, 428, 482, 583, 625 |
| ScrFI | CCNGG | 2 cut(s) | 169, 1149 |
| SduI | GDGCHC | 4 cut(s) | 223, 720, 871, 1519 |
| SexAI | ACCWGGT | 1 cut(s) | 1147 |
| SfaNI | GCATC | 4 cut(s) | 344, 833, 871, 1740 |
| SinI | GGWCC | 2 cut(s) | 1272, 1661 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 993 |
| SmlI | CTYRAG | 4 cut(s) | 175, 497, 1054, 1829 |
| SmoI | CTYRAG | 4 cut(s) | 175, 497, 1054, 1829 |
| SpeI | ACTAGT | 1 cut(s) | 401 |
| Sse9I | AATT | 5 cut(s) | 592, 955, 1017, 1172, 1328 |
| SsiI | CCGC | 2 cut(s) | 633, 658 |
| SspI | AATATT | 1 cut(s) | 1317 |
| SstI | GAGCTC | 1 cut(s) | 871 |
| StyD4I | CCNGG | 2 cut(s) | 167, 1147 |
| StyI | CCWWGG | 3 cut(s) | 51, 383, 1185 |
| TaaI | ACNGT | 5 cut(s) | 92, 776, 1051, 1360, 1582 |
| TaiI | ACGT | 3 cut(s) | 319, 1481, 1516 |
| TaqI | TCGA | 6 cut(s) | 25, 223, 338, 371, 434, 1502 |
| TasI | AATT | 5 cut(s) | 592, 955, 1017, 1172, 1328 |
| TatI | WGTACW | 1 cut(s) | 1768 |
| TfiI | GAWTC | 6 cut(s) | 137, 164, 1163, 1178, 1295, 1504 |
| Tru1I | TTAA | 4 cut(s) | 954, 993, 1055, 1830 |
| Tru9I | TTAA | 4 cut(s) | 954, 993, 1055, 1830 |
| TscAI | CASTG | 3 cut(s) | 292, 301, 1533 |
| TseFI | GTSAC | 3 cut(s) | 98, 920, 1603 |
| TseI | GCWGC | 1 cut(s) | 1463 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 920, 1603 |
| TspDTI | ATGAA | 4 cut(s) | 36, 171, 984, 1011 |
| TspGWI | ACGGA | 2 cut(s) | 520, 798 |
| TspRI | CASTG | 3 cut(s) | 292, 301, 1533 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1741 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 908 |
| Vha464I | CTTAAG | 2 cut(s) | 1054, 1829 |
| VneI | GTGCAC | 1 cut(s) | 1515 |
| VpaK11BI | GGWCC | 2 cut(s) | 1272, 1661 |
| VspI | ATTAAT | 1 cut(s) | 954 |
| XbaI | TCTAGA | 1 cut(s) | 1630 |
| XmaJI | CCTAGG | 1 cut(s) | 383 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1085, 1167 |