Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Forward (+)

27030870 .. 27033895

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGCCAAGTCCTCTTCTTCCCATCGTAAGAAACGCGACAAGATTTCCTCTAAGGCTCGAACGAAGAAGAGGAGTAAGAGCAAGAGCAGGAGTAAGAGTAAGAGTAAGAGTGAGAAATATAGATCCAAGAAGGTTCGTCGTCGCGATGATTCTCTTTCTTTTTCGGATGAGGATGATTCCAGAAGCTTGAGTTCAGATTCGTTGTTTAGCTCTGGGGACGACCGTAGAAGTAGAAGGGCTCGTTCACGCACTCGGAGGGATGTGAAGGGTAGCAAGAAGAGGGCTCGGAAGCGATCTTATAGCAGCAATAGTAGTGAGGAGTCTCCCCGTCCGAAGAAGAGGAAAGCAACAAAGAAGGTTAAGGAGTATGAGGCGAAGAAGAGAAGCCGTTCGAGGGAGAAGCCTAAGAGAAATGCTAGGACTAGTTCTGTGAGTAGTGAGTCTTGGAGCTGCTCGACTTGTCAGGGTGGGGGTGTTAGTGGTGACGAGATTGAATCTAAAAGACACAGGGGAAGGTCTGAAAAACAAAAGAGAGAGGAAACCAATAGAAACAAGGTTGAGAGTGGGACTGAGAGGAGTAGATATAGATCTAGGAGTCGTTCTTTGCGCAGTCATTATAGCGAGAGTGATTGTCAGAGTCAGGAAAGAGTGACCGGTGAGAGCAATGGGAGGAGATTGAGATCAGTTATTGCGGTAGCTGAAGAAGACAATGAAGGCAGATGGTTAGATGAGGATGGGCACAAAGAAGAGATTACATATGATCGTGATGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGGAGCAAGAAGGAGTTGGATAATCATTTACATGTTGCATCCGAGGTGAGAATGAGGGTAGAGAGTGAGAAAGAGGAAGAAGCTCTTGTTTCTGATGCCGAAGGAATTAATTCTAGCCGTGATGGAACCATGATGACTGATCATGTTAATGAAAATAAGATCTCTGGGGAAAGTAGTAGTTTGAAAGATGATGATCTGGAGACGATCTTAAGACAGAAGGCTTTAGAAAATCTAAAAAGGTTCAGAGGAAAGCCTCAAAGGATTGCAGTAACTGGTAATCAGGAAGATAAGAAGCAACCATCCGGTGCAAGGGCTGAATTGGTTCAAACAGACTCCCCCAAGGAGGATATTTCTGAAATAAATGGTCAAACCCGATTAGCAGAAGAGACCAATGAGCTTCCAGTGAAAGATTCCATTTGTGGAAATGAACCTGTCTCTGCCAAGCAAGATGTTGCTTGTCCAACACATCAAGAGCCTGTTGCTGGTATTTCCAAAATGGTTAGCACTACTGCTGTCGTAGATAAACCAAACTTGGCTGCACCAAAATCAATGTCTGGTTCACTAAAAACTCACTCAACTTTGAAGCCAGCACTTGCTTCTCTGGAACCCCCTCAGGAAAGATTGTTGATAACTGAGAGTAGTGTAGATAACACAGCTTCTGCGACTGCTCAAACTGTGACCCAAAGTAGCAATAATGATGCTCTAGACATCAGCAACGGTTCTGGTTCTACTGCTCCTGAACCTTCTGGAGAGAATAGGTCTGGTTTACAGCAAGATGAGGCTAAGGATGGTTCACAGTTTGAGCAGAAGACCATGTCTGTGATGCGAGGTAGTGAAATGGTACAGGTGGGTGTTTTGATCTATTGCATATTTGAAGTTCTTTTTTTCTTTTGTACTAAGCAACTTATGATAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

575

Amino Acids

64.23

Weight (kDa)

9.45

Isoelectric Point (pI)

77.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	608
AccII	CGCG	2 cut(s)	36, 144
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	2 cut(s)	1650, 1702
AfiI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1289
AflII	CTTAAG	1 cut(s)	1015
AflIII	ACRYGT	1 cut(s)	838
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	5 cut(s)	494, 991, 1133, 1390, 1682
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	7 cut(s)	186, 210, 450, 698, 890, 1204, 1463
AluI	AGCT	7 cut(s)	186, 210, 450, 698, 890, 1204, 1463
Alw26I	GTCTC	4 cut(s)	327, 1001, 1187, 1246
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	2 cut(s)	1079, 1466
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	303, 450, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	1343, 1375
AseI	ATTAAT	1 cut(s)	915
AsiGI	ACCGGT	1 cut(s)	653
Asp700I	GAANNNNTTC	3 cut(s)	388, 916, 1128
AspLEI	GCGC	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	494, 668, 865
AxyI	CCTNAGG	1 cut(s)	1419
BaeGI	GKGCMC	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	241, 286
BbsI	GAAGAC	2 cut(s)	711, 1622
BbvI	GCAGC	3 cut(s)	315, 437, 1330
BccI	CCATC	6 cut(s)	30, 714, 728, 923, 1114, 1589
BceAI	ACGGC	2 cut(s)	372, 909
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	4 cut(s)	327, 1001, 1187, 1246
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
BfrI	CTTAAG	1 cut(s)	1015
BglII	AGATCT	2 cut(s)	587, 966
BisI	GCNGC	3 cut(s)	304, 451, 1344
BlsI	GCNGC	3 cut(s)	305, 452, 1345
BmiI	GGNNCC	2 cut(s)	934, 1413
BmsI	GCATC	4 cut(s)	854, 892, 1495, 1620
BpiI	GAAGAC	2 cut(s)	711, 1622
BpmI	CTGGAG	2 cut(s)	1025, 1575
Bpu10I	CCTNAGC	1 cut(s)	1590
BpuEI	CTTGAG	1 cut(s)	208
BsaBI	GATNNNNATC	3 cut(s)	586, 679, 999
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	2 cut(s)	849, 1146
BsaWI	WCCGGW	2 cut(s)	653, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1289
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	2 cut(s)	1084, 1208
Bse21I	CCTNAGG	1 cut(s)	1419
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	3 cut(s)	586, 679, 999
BseDI	CCNNGG	2 cut(s)	849, 1146
BseGI	GGATG	7 cut(s)	172, 178, 265, 739, 845, 1106, 1600
BseJI	GATNNNNATC	3 cut(s)	586, 679, 999
BseLI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1289
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	3 cut(s)	561, 1431, 1433
BseNI	ACTGG	2 cut(s)	1084, 1208
BseRI	GAGGAG	4 cut(s)	85, 332, 589, 685
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	315, 437, 1330
BsgI	GTGCAG	1 cut(s)	1329
Bsh1236I	CGCG	2 cut(s)	36, 144
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	653
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	654, 1110
BslFI	GGGAC	2 cut(s)	230, 580
BslI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1289
BsmAI	GTCTC	4 cut(s)	327, 1001, 1187, 1246
BsmBI	CGTCTC	1 cut(s)	1001
BsmFI	GGGAC	2 cut(s)	230, 580
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	3 cut(s)	241, 286, 741
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	562, 1432, 1432
BspFNI	CGCG	2 cut(s)	36, 144
BspLI	GGNNCC	2 cut(s)	934, 1413
BspPI	GGATC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	1015
BspTNI	GGTCTC	1 cut(s)	1187
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	1084, 1208
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	2 cut(s)	849, 1146
BssT1I	CCWWGG	1 cut(s)	1146
Bst4CI	ACNGT	5 cut(s)	224, 797, 1483, 1526, 1605
Bst6I	CTCTTC	7 cut(s)	19, 62, 272, 332, 374, 741, 1185
BstAFI	CTTAAG	1 cut(s)	1015
BstC8I	GCNNGC	1 cut(s)	1395
BstDEI	CTNAG	7 cut(s)	51, 405, 570, 1419, 1440, 1590, 1704
BstF5I	GGATG	7 cut(s)	172, 178, 265, 739, 845, 1106, 1600
BstFNI	CGCG	2 cut(s)	36, 144
BstHHI	GCGC	1 cut(s)	609
BstMAI	GTCTC	4 cut(s)	327, 1001, 1187, 1246
BstMCI	CGRYCG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	2 cut(s)	36, 144
BstV1I	GCAGC	3 cut(s)	315, 437, 1330
BstV2I	GAAGAC	2 cut(s)	711, 1622
BstX2I	RGATCY	3 cut(s)	122, 587, 966
BstYI	RGATCY	3 cut(s)	122, 587, 966
Bsu36I	CCTNAGG	1 cut(s)	1419
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	7 cut(s)	172, 178, 265, 739, 845, 1106, 1600
BtsIMutI	CAGTG	1 cut(s)	1215
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	1395
CaiI	CAGNNNCTG	2 cut(s)	1079, 1466
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	1649, 1701
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	4 cut(s)	839, 937, 950, 1621
CviQI	GTAC	2 cut(s)	1649, 1701
DdeI	CTNAG	7 cut(s)	51, 405, 570, 1419, 1440, 1590, 1704
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	7 cut(s)	19, 62, 272, 332, 374, 741, 1185
EarI	CTCTTC	7 cut(s)	19, 62, 272, 332, 374, 741, 1185
Eco130I	CCWWGG	1 cut(s)	1146
Eco24I	GRGCYC	2 cut(s)	241, 286
Eco31I	GGTCTC	1 cut(s)	1187
Eco57I	CTGAAG	1 cut(s)	720
Eco81I	CCTNAGG	1 cut(s)	1419
EcoT14I	CCWWGG	1 cut(s)	1146
EcoT38I	GRGCYC	2 cut(s)	241, 286
ErhI	CCWWGG	1 cut(s)	1146
Esp3I	CGTCTC	1 cut(s)	1001
FaeI	CATG	4 cut(s)	842, 940, 953, 1624
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	2 cut(s)	230, 580
FatI	CATG	4 cut(s)	838, 936, 949, 1620
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	3 cut(s)	304, 451, 1344
FokI	GGATG	7 cut(s)	179, 185, 272, 746, 832, 1093, 1607
FriOI	GRGCYC	2 cut(s)	241, 286
Fsp4HI	GCNGC	3 cut(s)	304, 451, 1344
FspBI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	3 cut(s)	304, 451, 1344
GsuI	CTGGAG	2 cut(s)	1025, 1575
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	654, 1110
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	4 cut(s)	842, 940, 953, 1624
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	184
HpaII	CCGG	2 cut(s)	654, 1110
HphI	GGTGA	3 cut(s)	494, 668, 865
Hpy166II	GTNNAC	4 cut(s)	245, 1367, 1574, 1601
Hpy8I	GTNNAC	4 cut(s)	245, 1367, 1574, 1601
Hpy99I	CGWCG	2 cut(s)	141, 144
HpyCH4III	ACNGT	5 cut(s)	224, 797, 1483, 1526, 1605
HpyCH4V	TGCA	5 cut(s)	845, 1073, 1115, 1346, 1674
HpyF3I	CTNAG	7 cut(s)	51, 405, 570, 1419, 1440, 1590, 1704
Hsp92II	CATG	4 cut(s)	842, 940, 953, 1624
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	946
LmnI	GCTCC	3 cut(s)	447, 810, 1546
Lsp1109I	GCAGC	3 cut(s)	315, 437, 1330
LweI	GCATC	4 cut(s)	854, 892, 1495, 1620
MaeI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
MaeIII	GTNAC	4 cut(s)	482, 649, 1075, 1483
MflI	RGATCY	3 cut(s)	122, 587, 966
MhlI	GDGCHC	3 cut(s)	241, 286, 741
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	912, 916, 1124
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	329, 449, 604, 646, 1133
MmeI	TCCRAC	2 cut(s)	804, 1292
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	388, 916, 1128
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	360, 915, 954, 1016
MslI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	1015
MspI	CCGG	2 cut(s)	654, 1110
MvnI	CGCG	2 cut(s)	36, 144
NdeI	CATATG	1 cut(s)	757
NlaIII	CATG	4 cut(s)	842, 940, 953, 1624
NlaIV	GGNNCC	2 cut(s)	934, 1413
NmuCI	GTSAC	3 cut(s)	482, 649, 1483
NruI	TCGCGA	1 cut(s)	144
NsbI	TGCGCA	1 cut(s)	608
NspI	RCATGY	1 cut(s)	842
PciI	ACATGT	1 cut(s)	838
PdmI	GAANNNNTTC	3 cut(s)	388, 916, 1128
PfeI	GAWTC	5 cut(s)	149, 176, 197, 494, 1217
PflFI	GACNNNGTC	1 cut(s)	1621
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	305, 452, 1345
PleI	GAGTC	5 cut(s)	328, 448, 603, 645, 1133
PpsI	GAGTC	5 cut(s)	328, 448, 603, 645, 1133
PscI	ACATGT	1 cut(s)	838
PshBI	ATTAAT	1 cut(s)	915
PspN4I	GGNNCC	2 cut(s)	934, 1413
PstNI	CAGNNNCTG	2 cut(s)	1079, 1466
PsuI	RGATCY	3 cut(s)	122, 587, 966
PsyI	GACNNNGTC	1 cut(s)	1621
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	2 cut(s)	1650, 1702
RsaNI	GTAC	2 cut(s)	1649, 1701
RseI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
SaqAI	TTAA	4 cut(s)	360, 915, 954, 1016
SatI	GCNGC	3 cut(s)	304, 451, 1344
SchI	GAGTC	5 cut(s)	329, 449, 604, 646, 1133
SduI	GDGCHC	3 cut(s)	241, 286, 741
SfaNI	GCATC	4 cut(s)	854, 892, 1495, 1620
SmiMI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
SmlI	CTYRAG	2 cut(s)	187, 1015
SmoI	CTYRAG	2 cut(s)	187, 1015
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	3 cut(s)	912, 916, 1124
SsiI	CCGC	1 cut(s)	692
SspMI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
StyI	CCWWGG	1 cut(s)	1146
TaaI	ACNGT	5 cut(s)	224, 797, 1483, 1526, 1605
TaqI	TCGA	3 cut(s)	58, 392, 455
TasI	AATT	3 cut(s)	912, 916, 1124
TatI	WGTACW	1 cut(s)	1700
TfiI	GAWTC	5 cut(s)	149, 176, 197, 494, 1217
Tru1I	TTAA	4 cut(s)	360, 915, 954, 1016
Tru9I	TTAA	4 cut(s)	360, 915, 954, 1016
TscAI	CASTG	1 cut(s)	1215
TseFI	GTSAC	3 cut(s)	482, 649, 1483
TseI	GCWGC	3 cut(s)	303, 450, 1343
Tsp45I	GTSAC	3 cut(s)	482, 649, 1483
TspDTI	ATGAA	3 cut(s)	726, 972, 1248
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	1 cut(s)	1215
Tth111I	GACNNNGTC	1 cut(s)	1621
Vha464I	CTTAAG	1 cut(s)	1015
VspI	ATTAAT	1 cut(s)	915
XbaI	TCTAGA	1 cut(s)	1510
XceI	RCATGY	1 cut(s)	842
XmnI	GAANNNNTTC	3 cut(s)	388, 916, 1128
XspI	CTAG	5 cut(s)	417, 423, 591, 921, 1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.