Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Forward (+)

26460759 .. 26463600

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGGCCAAGTCCTCTTCTTCCCATCGTAAGAAACGCGACAAGATTTCCTCTAAGGCTCGAACGAAGAAGAGGAGTAAGAGCAAGAGCAGGAGTAAGAGTAAGAGTGAGAAATATAGATCCAAGAAGGTTCGTCGTCGCGATGATTCTCTTTCTTTTTCGGATGAGGATGATTCCAGAAGCTTGAGTTCAGATTCGTTGTTTAGCTCTGGGGATGACCGTAGAAGTAGAAGGGCTCGTTCACGCAGTCGGAGGGATGTGAAGGGTAGCAAGAAGAGGGCTCGGAAGCGATCTTATAGCAGCGATAGTAGTGAGGAGTCTCCCCATCCGAAGAAGAGGAAAGCAACAAAGAAGGTTAAGGAGTATGATGCGAAGAAGAGGAGCCGTTCGAGGGAGAAGCCTAAGAGAAATGCTAGGACTAGTTCTGTGAGTAGTGAGTCTTGGAGCTGCTCGACTTGTCAGGGTGGGGGTGTTAGCGGTGACGAGATTAAATCTAAAAGACATAGGGGAAGGTCTGAAAAACGAAAGAGAGAGGAAACCGATAGAAACAAGGTTGAGAGTGGGACTGAGAGGAGTAGATATAGATCTAGGAGTCGTTCTTTGCGCAGTCATTATAGCGAGAGTGATTGTCAGAGTCAGGAAAGAGTGACCGGAGAGAGCAATGGGAGGAGATTGAGATCAGTTATTGCGGTAGCCGAAGAAAACAATGAAGGCAGATGGTTAGATGAGGATGGGCACAAAGAAGAGATTACATATGATCGTGATGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGGAGCAAGAAGGAGTTGGATAATCATCTACATGTTTCATCCGAGGTGAGAATGAGGGTAGAGAGTGTGAAAGAGGAAGAAGCTCTTGTTTCTGATGCAGAAGGAATTAATTCTAGCCGTGATGGAACCATGATGACCGATCATGTTAATGAAAATAAGATCTCTGGGGAAAGTAGTAGTTTGAAAGATGATGATCTGGAGACGATCTTAAGACAGAAGGCTTTAGAAAATCTAAAAAGGTTCAGAGGAAAGCCTCAAAGGATTGCAGTAACTGGTAATCAGGAAGATAAGAAGCAACCATCCGGTGCAAGGGCTGAATTGGTCCAAATAGACTCCCCCAAGGAGGATATTTCTGAAATAAATGGTCAAACCCGATTAGCAGAAGAGACCAATGAGCCTCCAGTGAAAGATTCCATTTGTGGAAATGAACCTGTCTCTGCCAAGCAAGATTTTGCTTGTCCAACACATCAAGAGCGTGTTGCTGGTATTTCCAAAATGGTTAGCACTACTGCTGTCGTAGACAAACCAAACTTGGCTGCACCAAAATCAATGTCTGGTTCACTAAAAACTCACTCAACTTTGAAGCCAGCACTTGCTTCTCTGGAACCCCCCCAGGAAAGATTGTTGGTAACTGAGAGTAGTGTAGATAACACAGCTTCTGCTACTGCTCAAACTGTGACCCAAAGTAGCAAAAATGATGCTCTAGACATCAGCAACGGTTCTGGTTCTACTGCTCCTGAACCTTCTGGAGAGAATAGGTCTGGTTTTCAGCAAGATGAGGCTAAGGATGGTTCACAGTTTGAGCAGAAGACCATGTCTGTGATGCGAGGTAGTGAAATGGTACAGGTAAGCTACAAGGTTTACATCCCGAAGAAAGCCCCTGCTTTGGCGAGGAGGCACCTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

570

Amino Acids

63.79

Weight (kDa)

9.75

Isoelectric Point (pI)

78.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	1698
AccI	GTMKAC	1 cut(s)	1320
AccII	CGCG	2 cut(s)	36, 138
AciI	CCGC	2 cut(s)	474, 686
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	1644
AfiI	CCNNNNNNNGG	4 cut(s)	388, 1110, 1144, 1687
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	2 cut(s)	985, 1384
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	1413
AluBI	AGCT	6 cut(s)	180, 204, 444, 884, 1457, 1653
AluI	AGCT	6 cut(s)	180, 204, 444, 884, 1457, 1653
Alw26I	GTCTC	4 cut(s)	321, 995, 1181, 1240
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	1073, 1460
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	297, 444, 1337
ArsI	GACNNNNNNTTYG	2 cut(s)	1337, 1369
AseI	ATTAAT	1 cut(s)	909
Asp700I	GAANNNNTTC	1 cut(s)	910
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	1123
AsuHPI	GGTGA	2 cut(s)	488, 859
AvaII	GGWCC	1 cut(s)	1123
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1698
BanII	GRGCYC	2 cut(s)	235, 280
BbsI	GAAGAC	1 cut(s)	1616
BbvI	GCAGC	3 cut(s)	309, 431, 1324
BccI	CCATC	7 cut(s)	30, 330, 708, 722, 917, 1108, 1583
BceAI	ACGGC	2 cut(s)	366, 903
BciT130I	CCWGG	1 cut(s)	1415
BcoDI	GTCTC	4 cut(s)	321, 995, 1181, 1240
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	5 cut(s)	411, 417, 585, 915, 1505
BfrI	CTTAAG	1 cut(s)	1009
BglII	AGATCT	2 cut(s)	581, 960
BisI	GCNGC	3 cut(s)	298, 445, 1338
BlsI	GCNGC	3 cut(s)	299, 446, 1339
Bme1390I	CCNGG	1 cut(s)	1415
Bme18I	GGWCC	1 cut(s)	1123
BmgT120I	GGNCC	1 cut(s)	1123
BmiI	GGNNCC	4 cut(s)	380, 928, 1407, 1700
BmrFI	CCNGG	1 cut(s)	1415
BmsI	GCATC	4 cut(s)	355, 886, 1489, 1614
BpiI	GAAGAC	1 cut(s)	1616
BpmI	CTGGAG	3 cut(s)	1019, 1185, 1569
Bpu10I	CCTNAGC	1 cut(s)	1584
BpuEI	CTTGAG	2 cut(s)	202, 1688
BsaBI	GATNNNNATC	4 cut(s)	580, 673, 825, 993
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	3 cut(s)	843, 1140, 1413
BsaWI	WCCGGW	2 cut(s)	647, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 1110, 1144, 1687
Bse1I	ACTGG	2 cut(s)	1078, 1202
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	4 cut(s)	580, 673, 825, 993
BseBI	CCWGG	1 cut(s)	1415
BseDI	CCNNGG	3 cut(s)	843, 1140, 1413
BseJI	GATNNNNATC	4 cut(s)	580, 673, 825, 993
BseLI	CCNNNNNNNGG	4 cut(s)	388, 1110, 1144, 1687
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	555, 1425
BseNI	ACTGG	2 cut(s)	1078, 1202
BseRI	GAGGAG	6 cut(s)	85, 326, 391, 583, 679, 1708
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	309, 431, 1324
BsgI	GTGCAG	1 cut(s)	1323
Bsh1236I	CGCG	2 cut(s)	36, 138
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	1698
BsiSI	CCGG	2 cut(s)	648, 1104
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	4 cut(s)	388, 1110, 1144, 1687
BsmAI	GTCTC	4 cut(s)	321, 995, 1181, 1240
BsmBI	CGTCTC	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	1181
Bsp1286I	GDGCHC	3 cut(s)	235, 280, 735
Bsp143I	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	2 cut(s)	474, 686
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	556, 1426
BspFNI	CGCG	2 cut(s)	36, 138
BspLI	GGNNCC	4 cut(s)	380, 928, 1407, 1700
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	1698
BspTI	CTTAAG	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	1181
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	1078, 1202
BssECI	CCNNGG	3 cut(s)	843, 1140, 1413
BssMI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
BssT1I	CCWWGG	1 cut(s)	1140
Bst2UI	CCWGG	1 cut(s)	1415
Bst4CI	ACNGT	5 cut(s)	218, 791, 1477, 1520, 1599
Bst6I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1179
BstAFI	CTTAAG	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	1389
BstDEI	CTNAG	5 cut(s)	51, 399, 564, 1434, 1584
BstFNI	CGCG	2 cut(s)	36, 138
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	9 cut(s)	119, 290, 584, 677, 757, 943, 963, 997, 1008
BstMAI	GTCTC	4 cut(s)	321, 995, 1181, 1240
BstMBI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
BstMWI	GCNNNNNNNGC	1 cut(s)	1705
BstNI	CCWGG	1 cut(s)	1415
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	1 cut(s)	1413
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	2 cut(s)	36, 138
BstV1I	GCAGC	3 cut(s)	309, 431, 1324
BstV2I	GAAGAC	1 cut(s)	1616
BstX2I	RGATCY	3 cut(s)	116, 581, 960
BstYI	RGATCY	3 cut(s)	116, 581, 960
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	1209
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	1389
CaiI	CAGNNNCTG	2 cut(s)	1073, 1460
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	1123
Csp6I	GTAC	1 cut(s)	1643
CviAII	CATG	4 cut(s)	833, 931, 944, 1615
CviQI	GTAC	1 cut(s)	1643
DdeI	CTNAG	5 cut(s)	51, 399, 564, 1434, 1584
DpnI	GATC	9 cut(s)	118, 289, 583, 676, 756, 942, 962, 996, 1007
DpnII	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1179
EarI	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1179
Eco130I	CCWWGG	1 cut(s)	1140
Eco24I	GRGCYC	2 cut(s)	235, 280
Eco31I	GGTCTC	1 cut(s)	1181
Eco47I	GGWCC	1 cut(s)	1123
EcoRII	CCWGG	1 cut(s)	1413
EcoT14I	CCWWGG	1 cut(s)	1140
EcoT38I	GRGCYC	2 cut(s)	235, 280
ErhI	CCWWGG	1 cut(s)	1140
Esp3I	CGTCTC	1 cut(s)	995
FaeI	CATG	4 cut(s)	836, 934, 947, 1618
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	4 cut(s)	832, 930, 943, 1614
FauNDI	CATATG	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	1320
Fnu4HI	GCNGC	3 cut(s)	298, 445, 1338
FriOI	GRGCYC	2 cut(s)	235, 280
Fsp4HI	GCNGC	3 cut(s)	298, 445, 1338
FspBI	CTAG	5 cut(s)	411, 417, 585, 915, 1505
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	298, 445, 1338
GsuI	CTGGAG	3 cut(s)	1019, 1185, 1569
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	648, 1104
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	4 cut(s)	836, 934, 947, 1618
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	9 cut(s)	143, 170, 191, 314, 434, 589, 631, 1133, 1211
HpaII	CCGG	2 cut(s)	648, 1104
HphI	GGTGA	2 cut(s)	488, 859
Hpy166II	GTNNAC	5 cut(s)	239, 1321, 1361, 1595, 1663
Hpy8I	GTNNAC	5 cut(s)	239, 1321, 1361, 1595, 1663
Hpy99I	CGWCG	2 cut(s)	135, 138
HpyCH4III	ACNGT	5 cut(s)	218, 791, 1477, 1520, 1599
HpyCH4V	TGCA	4 cut(s)	899, 1067, 1109, 1340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1705
HpyF3I	CTNAG	5 cut(s)	51, 399, 564, 1434, 1584
Hsp92II	CATG	4 cut(s)	836, 934, 947, 1618
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
LmnI	GCTCC	4 cut(s)	378, 441, 804, 1540
Lsp1109I	GCAGC	3 cut(s)	309, 431, 1324
LweI	GCATC	4 cut(s)	355, 886, 1489, 1614
MaeI	CTAG	5 cut(s)	411, 417, 585, 915, 1505
MaeIII	GTNAC	5 cut(s)	476, 643, 1069, 1429, 1477
MalI	GATC	9 cut(s)	118, 289, 583, 676, 756, 942, 962, 996, 1007
MboI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
MflI	RGATCY	3 cut(s)	116, 581, 960
MhlI	GDGCHC	3 cut(s)	235, 280, 735
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	906, 910, 1118
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	323, 443, 598, 640, 1127
MmeI	TCCRAC	3 cut(s)	227, 798, 1286
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	910
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	354, 486, 909, 948, 1010
MslI	CAYNNNNRTG	3 cut(s)	831, 948, 1619
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	1009
MspI	CCGG	2 cut(s)	648, 1104
MspR9I	CCNGG	1 cut(s)	1415
MvaI	CCWGG	1 cut(s)	1415
MvnI	CGCG	2 cut(s)	36, 138
MwoI	GCNNNNNNNGC	1 cut(s)	1705
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
NlaIII	CATG	4 cut(s)	836, 934, 947, 1618
NlaIV	GGNNCC	4 cut(s)	380, 928, 1407, 1700
NmuCI	GTSAC	3 cut(s)	476, 643, 1477
NruI	TCGCGA	1 cut(s)	138
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	836
PciI	ACATGT	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	4 cut(s)	143, 170, 191, 1211
PflFI	GACNNNGTC	1 cut(s)	1615
PkrI	GCNGC	3 cut(s)	299, 446, 1339
PleI	GAGTC	5 cut(s)	322, 442, 597, 639, 1127
PpsI	GAGTC	5 cut(s)	322, 442, 597, 639, 1127
PscI	ACATGT	1 cut(s)	832
PshBI	ATTAAT	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	1413
PspGI	CCWGG	1 cut(s)	1413
PspN4I	GGNNCC	4 cut(s)	380, 928, 1407, 1700
PspPI	GGNCC	1 cut(s)	1123
PstNI	CAGNNNCTG	2 cut(s)	1073, 1460
PsuI	RGATCY	3 cut(s)	116, 581, 960
PsyI	GACNNNGTC	1 cut(s)	1615
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	1 cut(s)	1644
RsaNI	GTAC	1 cut(s)	1643
RseI	CAYNNNNRTG	3 cut(s)	831, 948, 1619
SaqAI	TTAA	5 cut(s)	354, 486, 909, 948, 1010
SatI	GCNGC	3 cut(s)	298, 445, 1338
Sau3AI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
Sau96I	GGNCC	1 cut(s)	1123
SchI	GAGTC	5 cut(s)	323, 443, 598, 640, 1127
ScrFI	CCNGG	1 cut(s)	1415
SduI	GDGCHC	3 cut(s)	235, 280, 735
SfaNI	GCATC	4 cut(s)	355, 886, 1489, 1614
SinI	GGWCC	1 cut(s)	1123
SmiMI	CAYNNNNRTG	3 cut(s)	831, 948, 1619
SmlI	CTYRAG	3 cut(s)	181, 1009, 1703
SmoI	CTYRAG	3 cut(s)	181, 1009, 1703
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	3 cut(s)	906, 910, 1118
SsiI	CCGC	2 cut(s)	474, 686
SspMI	CTAG	5 cut(s)	411, 417, 585, 915, 1505
StyD4I	CCNGG	1 cut(s)	1413
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	5 cut(s)	218, 791, 1477, 1520, 1599
TaqI	TCGA	3 cut(s)	58, 386, 449
TaqII	GACCGA	1 cut(s)	953
TasI	AATT	3 cut(s)	906, 910, 1118
TfiI	GAWTC	4 cut(s)	143, 170, 191, 1211
Tru1I	TTAA	5 cut(s)	354, 486, 909, 948, 1010
Tru9I	TTAA	5 cut(s)	354, 486, 909, 948, 1010
TscAI	CASTG	1 cut(s)	1209
TseFI	GTSAC	3 cut(s)	476, 643, 1477
TseI	GCWGC	3 cut(s)	297, 444, 1337
Tsp45I	GTSAC	3 cut(s)	476, 643, 1477
TspDTI	ATGAA	4 cut(s)	720, 828, 966, 1242
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	1 cut(s)	1209
Tth111I	GACNNNGTC	1 cut(s)	1615
Vha464I	CTTAAG	1 cut(s)	1009
VpaK11BI	GGWCC	1 cut(s)	1123
VspI	ATTAAT	1 cut(s)	909
XbaI	TCTAGA	1 cut(s)	1504
XceI	RCATGY	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	1320
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	5 cut(s)	411, 417, 585, 915, 1505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.