Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Reverse (-)

66903733 .. 66906449

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGCCAAGTCCTCTTCTTCCCATCGTAAGAAACGCGACAAGATTTCCTCTAAGGCTCGAACGAAGAAGAGGAGCAAGAGCAAGAGTAAGAGTAAGAGTAAGAGTGAGAAATATAGATCCAAGAAGGTTCGTCGTCGCGATGATTCTCTTTCTCTTTCTGATGAGGATGATTCAAGAAGCTTGAGTTCAGATTCGTCATTTAGCTCTGGGGATGACCGTAGAAGTAGAAGGGCTCGTTCACGCACTCGGAGGGATGTGAAGGGTAGCAAGAAGAGGGCTCGGAAGAGATCTTATAGCAGTGATAGTAGTGAGGAGTCTCCCCGTCCCCGTCTGAAGAAGAGGAAAGCAACAAAGAAGGTTAAGGAGTATGAGGCGAAGAAGAGAAGCCGTTCGAGGGAGAAGCCTAAGAGAAATGCTAGGACTAGTTCTGTGAGTAGTGAGTCTTGGAGCTGCTCGACTTGTCAGGGTGGGGGTGTTAGTGGTGATGAGATTGAATCTAAAAGACATAGGGGAAGATCTGAAAAACGTAAGAGAGAGGAAACCGATAGAAACAAGGTTGAGAGTGGGACTGAGAGGAGTAGATATAGATCTAGGAGTCGTTCTTTGCACAGTCATTATAGCGAGAGTGATTGTCAGAGTCAGGAAAGAGTGACCGGTGAGAGCAATGGGAGGAGATTGAGATCAGTTATTGCGGTAGCCGAAGAAGACAATGAGGGCAGATGGTTAGATGAGGATGGGCACAAAGAAGAGATTACATATGATCGTGATGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGGAGCAAGAAGGAGTTGGATAATCATTTACATGTTGCTTCTGAGGTGAGAATGAGGGTAGAGAGTGAGAAAGAGGAAGAAGCTCTTGTTTCTGATGCAGAAGGAATTAATTCTAGCCGTGATGGAACCATGATGACTGATCATGTTAATGAAAATAAGATCTCTGGGGAAATTAGTAGTTTGAAAGATGATGATCTGGAGACGATCTTAAGACAGAAGGCTTTAGAAAATCTAAAAAGGTTCAGAGGAAAGCCTCAAATGATTGCAGTAACTGATAATCAGGAAGATAAGAAGCAACCATCCGGTGCAAGGGCTGAATTGGTTCAAACAGACTCCCCCAAGGAGGATATTTCTGAAATAAATGGTCAAACCCGATTAGCAGAAGAGACCAATGGGCCTTCTGTGAAAGATTCCATTTGTGGAAATGAACCTGTCTGTGCCAAGCAAGATGTTGCTTGTCCAACACATCAAGAGCCTGTTGCTGTTATTTCCAAAATGGTTAGCACTACTGCTGTCGTAGATAAACCAAACTTGGCTGCACCAAAATCAATGTCTGGTTCACTAAAAACTCGCTCAACTTTGAAGCCAGCACTTGCTTCTCTGGAACCCCCTCAGGAAAGATTGTTGGTAATTGAGAGTAGTGTAGATAACACAGCTTCTGCTACTGCTCAAACTGTGACCCAAAGTAGCAATAATGATGCTCTAGACATCAGCAACGGTTCTGGTTCTACTGCTCCTGAACCTTCTGGAGAGAATAGGTCTGGTTTACAGCAAGATGAGGCTAAGGATGGTTCACAGTTTGAGCAGAAGACCATGTCTGTGATGCGAGGTAGTGAAATGGTACAGGTAAGCTACAAGGTTTACATCCCGAAGAAAGCCCCTGCTTTGGCGAGGAGGCGCCTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

572

Amino Acids

63.93

Weight (kDa)

9.63

Isoelectric Point (pI)

78.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1704
AccII	CGCG	2 cut(s)	36, 138
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	1705
AfaI	GTAC	1 cut(s)	1650
AfiI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1693
AflII	CTTAAG	1 cut(s)	1015
AflIII	ACRYGT	1 cut(s)	838
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	5 cut(s)	174, 494, 991, 1133, 1390
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	6 cut(s)	180, 204, 450, 890, 1463, 1659
AluI	AGCT	6 cut(s)	180, 204, 450, 890, 1463, 1659
Alw26I	GTCTC	3 cut(s)	321, 1001, 1187
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	1079, 1466
AoxI	GGCC	2 cut(s)	3, 1202
ApeKI	GCWGC	2 cut(s)	450, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	1343, 1375
AseI	ATTAAT	1 cut(s)	915
AsiGI	ACCGGT	1 cut(s)	653
Asp700I	GAANNNNTTC	3 cut(s)	388, 916, 1128
AspLEI	GCGC	1 cut(s)	1707
AspS9I	GGNCC	1 cut(s)	1202
AsuHPI	GGTGA	3 cut(s)	494, 668, 865
AxyI	CCTNAGG	1 cut(s)	1419
BaeGI	GKGCMC	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1704
BanII	GRGCYC	2 cut(s)	235, 280
BbsI	GAAGAC	2 cut(s)	711, 1622
BbvI	GCAGC	2 cut(s)	437, 1330
BccI	CCATC	6 cut(s)	30, 714, 728, 923, 1114, 1589
BceAI	ACGGC	2 cut(s)	372, 909
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	3 cut(s)	321, 1001, 1187
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
BfoI	RGCGCY	1 cut(s)	1708
BfrI	CTTAAG	1 cut(s)	1015
BglII	AGATCT	4 cut(s)	287, 515, 587, 966
BisI	GCNGC	2 cut(s)	451, 1344
BlsI	GCNGC	2 cut(s)	452, 1345
BmgT120I	GGNCC	1 cut(s)	1202
BmiI	GGNNCC	3 cut(s)	934, 1413, 1706
BmsI	GCATC	3 cut(s)	892, 1495, 1620
BpiI	GAAGAC	2 cut(s)	711, 1622
BpmI	CTGGAG	2 cut(s)	1025, 1575
Bpu10I	CCTNAGC	1 cut(s)	1590
BpuEI	CTTGAG	2 cut(s)	202, 1694
BsaBI	GATNNNNATC	3 cut(s)	586, 679, 999
BsaHI	GRCGYC	1 cut(s)	1705
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	1 cut(s)	1146
BsaWI	WCCGGW	2 cut(s)	653, 1109
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1693
Bse118I	RCCGGY	1 cut(s)	653
Bse21I	CCTNAGG	1 cut(s)	1419
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	3 cut(s)	586, 679, 999
BseDI	CCNNGG	1 cut(s)	1146
BseGI	GGATG	7 cut(s)	172, 217, 259, 739, 1106, 1600, 1671
BseJI	GATNNNNATC	3 cut(s)	586, 679, 999
BseLI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1693
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	3 cut(s)	561, 840, 1433
BseRI	GAGGAG	5 cut(s)	85, 326, 589, 685, 1714
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	437, 1330
BsgI	GTGCAG	1 cut(s)	1329
Bsh1236I	CGCG	2 cut(s)	36, 138
BshFI	GGCC	2 cut(s)	5, 1204
BshNI	GGYRCC	1 cut(s)	1704
BshTI	ACCGGT	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	654, 1110
BslFI	GGGAC	2 cut(s)	309, 580
BslI	CCNNNNNNNGG	4 cut(s)	394, 1116, 1150, 1693
BsmAI	GTCTC	3 cut(s)	321, 1001, 1187
BsmBI	CGTCTC	1 cut(s)	1001
BsmFI	GGGAC	2 cut(s)	309, 580
BsnI	GGCC	2 cut(s)	5, 1204
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	3 cut(s)	235, 280, 741
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	2 cut(s)	5, 1204
BspCNI	CTCAG	3 cut(s)	562, 841, 1432
BspFNI	CGCG	2 cut(s)	36, 138
BspLI	GGNNCC	3 cut(s)	934, 1413, 1706
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	1704
BspTI	CTTAAG	1 cut(s)	1015
BspTNI	GGTCTC	1 cut(s)	1187
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	1 cut(s)	1146
BssNI	GRCGYC	1 cut(s)	1705
BssT1I	CCWWGG	1 cut(s)	1146
Bst4CI	ACNGT	6 cut(s)	218, 611, 797, 1483, 1526, 1605
Bst6I	CTCTTC	8 cut(s)	19, 62, 266, 278, 332, 374, 741, 1185
BstACI	GRCGYC	1 cut(s)	1705
BstAFI	CTTAAG	1 cut(s)	1015
BstC8I	GCNNGC	1 cut(s)	1395
BstDEI	CTNAG	6 cut(s)	51, 405, 570, 849, 1419, 1590
BstF5I	GGATG	7 cut(s)	172, 217, 259, 739, 1106, 1600, 1671
BstFNI	CGCG	2 cut(s)	36, 138
BstH2I	RGCGCY	1 cut(s)	1708
BstHHI	GCGC	1 cut(s)	1707
BstMAI	GTCTC	3 cut(s)	321, 1001, 1187
BstMWI	GCNNNNNNNGC	1 cut(s)	1711
BstNSI	RCATGY	1 cut(s)	842
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	2 cut(s)	36, 138
BstV1I	GCAGC	2 cut(s)	437, 1330
BstV2I	GAAGAC	2 cut(s)	711, 1622
BstX2I	RGATCY	5 cut(s)	116, 287, 515, 587, 966
BstYI	RGATCY	5 cut(s)	116, 287, 515, 587, 966
Bsu36I	CCTNAGG	1 cut(s)	1419
BsuRI	GGCC	2 cut(s)	5, 1204
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	7 cut(s)	172, 217, 259, 739, 1106, 1600, 1671
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	1395
CaiI	CAGNNNCTG	2 cut(s)	1079, 1466
CfoI	GCGC	1 cut(s)	1707
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	1202
Csp6I	GTAC	1 cut(s)	1649
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	4 cut(s)	839, 937, 950, 1621
CviQI	GTAC	1 cut(s)	1649
DdeI	CTNAG	6 cut(s)	51, 405, 570, 849, 1419, 1590
DinI	GGCGCC	1 cut(s)	1706
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	8 cut(s)	19, 62, 266, 278, 332, 374, 741, 1185
EarI	CTCTTC	8 cut(s)	19, 62, 266, 278, 332, 374, 741, 1185
Eco130I	CCWWGG	1 cut(s)	1146
Eco24I	GRGCYC	2 cut(s)	235, 280
Eco31I	GGTCTC	1 cut(s)	1187
Eco57I	CTGAAG	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	1419
EcoT14I	CCWWGG	1 cut(s)	1146
EcoT38I	GRGCYC	2 cut(s)	235, 280
EgeI	GGCGCC	1 cut(s)	1706
EheI	GGCGCC	1 cut(s)	1706
ErhI	CCWWGG	1 cut(s)	1146
Esp3I	CGTCTC	1 cut(s)	1001
FaeI	CATG	4 cut(s)	842, 940, 953, 1624
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	2 cut(s)	309, 580
FatI	CATG	4 cut(s)	838, 936, 949, 1620
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	2 cut(s)	451, 1344
FokI	GGATG	7 cut(s)	179, 224, 266, 746, 1093, 1607, 1658
FriOI	GRGCYC	2 cut(s)	235, 280
Fsp4HI	GCNGC	2 cut(s)	451, 1344
FspBI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
GlaI	GCGC	1 cut(s)	1706
GluI	GCNGC	2 cut(s)	451, 1344
GsuI	CTGGAG	2 cut(s)	1025, 1575
HaeII	RGCGCY	1 cut(s)	1708
HaeIII	GGCC	2 cut(s)	5, 1204
HapII	CCGG	2 cut(s)	654, 1110
HhaI	GCGC	1 cut(s)	1707
Hin1I	GRCGYC	1 cut(s)	1705
Hin1II	CATG	4 cut(s)	842, 940, 953, 1624
Hin6I	GCGC	1 cut(s)	1705
HinP1I	GCGC	1 cut(s)	1705
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	2 cut(s)	654, 1110
HphI	GGTGA	3 cut(s)	494, 668, 865
Hpy166II	GTNNAC	5 cut(s)	239, 1367, 1574, 1601, 1669
Hpy8I	GTNNAC	5 cut(s)	239, 1367, 1574, 1601, 1669
Hpy99I	CGWCG	2 cut(s)	135, 138
HpyCH4III	ACNGT	6 cut(s)	218, 611, 797, 1483, 1526, 1605
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	607, 905, 1073, 1115, 1346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1711
HpyF3I	CTNAG	6 cut(s)	51, 405, 570, 849, 1419, 1590
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	1705
Hsp92II	CATG	4 cut(s)	842, 940, 953, 1624
HspAI	GCGC	1 cut(s)	1705
KasI	GGCGCC	1 cut(s)	1704
Ksp22I	TGATCA	1 cut(s)	946
LmnI	GCTCC	4 cut(s)	72, 447, 810, 1546
Lsp1109I	GCAGC	2 cut(s)	437, 1330
LweI	GCATC	3 cut(s)	892, 1495, 1620
MaeI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	3 cut(s)	649, 1075, 1483
MflI	RGATCY	5 cut(s)	116, 287, 515, 587, 966
MhlI	GDGCHC	3 cut(s)	235, 280, 741
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	912, 916, 978, 1124, 1437
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1705
MlyI	GAGTC	5 cut(s)	323, 449, 604, 646, 1133
MmeI	TCCRAC	2 cut(s)	804, 1292
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	388, 916, 1128
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	360, 915, 954, 1016
MslI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	1015
MspI	CCGG	2 cut(s)	654, 1110
MvnI	CGCG	2 cut(s)	36, 138
MwoI	GCNNNNNNNGC	1 cut(s)	1711
NarI	GGCGCC	1 cut(s)	1705
NdeI	CATATG	1 cut(s)	757
NlaIII	CATG	4 cut(s)	842, 940, 953, 1624
NlaIV	GGNNCC	3 cut(s)	934, 1413, 1706
NmuCI	GTSAC	2 cut(s)	649, 1483
NruI	TCGCGA	1 cut(s)	138
NspI	RCATGY	1 cut(s)	842
PciI	ACATGT	1 cut(s)	838
PdmI	GAANNNNTTC	3 cut(s)	388, 916, 1128
PfeI	GAWTC	5 cut(s)	143, 170, 191, 494, 1217
PflFI	GACNNNGTC	1 cut(s)	1621
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	2 cut(s)	452, 1345
PleI	GAGTC	5 cut(s)	322, 448, 603, 645, 1133
PluTI	GGCGCC	1 cut(s)	1708
PpsI	GAGTC	5 cut(s)	322, 448, 603, 645, 1133
PscI	ACATGT	1 cut(s)	838
PshBI	ATTAAT	1 cut(s)	915
PspN4I	GGNNCC	3 cut(s)	934, 1413, 1706
PspPI	GGNCC	1 cut(s)	1202
PstNI	CAGNNNCTG	2 cut(s)	1079, 1466
PsuI	RGATCY	5 cut(s)	116, 287, 515, 587, 966
PsyI	GACNNNGTC	1 cut(s)	1621
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	1 cut(s)	1650
RsaNI	GTAC	1 cut(s)	1649
RseI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
SaqAI	TTAA	4 cut(s)	360, 915, 954, 1016
SatI	GCNGC	2 cut(s)	451, 1344
Sau96I	GGNCC	1 cut(s)	1202
SchI	GAGTC	5 cut(s)	323, 449, 604, 646, 1133
SduI	GDGCHC	3 cut(s)	235, 280, 741
SfaNI	GCATC	3 cut(s)	892, 1495, 1620
SfoI	GGCGCC	1 cut(s)	1706
SmiMI	CAYNNNNRTG	3 cut(s)	837, 954, 1625
SmlI	CTYRAG	3 cut(s)	181, 1015, 1709
SmoI	CTYRAG	3 cut(s)	181, 1015, 1709
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	5 cut(s)	912, 916, 978, 1124, 1437
SsiI	CCGC	1 cut(s)	692
SspDI	GGCGCC	1 cut(s)	1704
SspMI	CTAG	5 cut(s)	417, 423, 591, 921, 1511
StyI	CCWWGG	1 cut(s)	1146
TaaI	ACNGT	6 cut(s)	218, 611, 797, 1483, 1526, 1605
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	3 cut(s)	58, 392, 455
TasI	AATT	5 cut(s)	912, 916, 978, 1124, 1437
TfiI	GAWTC	5 cut(s)	143, 170, 191, 494, 1217
Tru1I	TTAA	4 cut(s)	360, 915, 954, 1016
Tru9I	TTAA	4 cut(s)	360, 915, 954, 1016
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	649, 1483
TseI	GCWGC	2 cut(s)	450, 1343
Tsp45I	GTSAC	2 cut(s)	649, 1483
TspDTI	ATGAA	2 cut(s)	972, 1248
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	1621
Vha464I	CTTAAG	1 cut(s)	1015
VspI	ATTAAT	1 cut(s)	915
XbaI	TCTAGA	1 cut(s)	1510
XceI	RCATGY	1 cut(s)	842
XmnI	GAANNNNTTC	3 cut(s)	388, 916, 1128
XspI	CTAG	5 cut(s)	417, 423, 591, 921, 1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.