RLG00000033423

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
26984973 .. 26987286
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033423

Sequence Viewer

Length: 1719 bp
ATGGCCAAGTCCTCTTCTTCCCATCGTAGGAAACGCGACGAGATTTCCTCTAAGGTTCGAACGAAGAAGAGGAGTAAGCGCAAGAGCAAGAGTAAGAGTAAGAGTGAGAAATATAGATCCAAGAAGGTTCGTCGTCGCGATGATTCTCTTTCTTTTTCGGATGAGGATGATTCCAGAAGCTTGAGTTCAGATTCGTCATTTAGCTCTGGGAGTGACCGTAGAAGTAGAAGGGCTCGTTCACGCACTCGGAGGGATGTGAAGGGTAACAAGAAGAGGGCTCGGAAGAGATCTTATAGCAGTGATAGTAGTGAGGAGTCTCCCCGTCCCCGTCTGAAGAAGAGGAAAGCCACGAAGAAGGTTAAGGAGTATGAGGCGAAGAAGAGAAGCCGTTCGAGGGAGAAGCCTAAGAGAAATGCTAGGACTAGTTCTGTGAGTAGTGAGTCTTGGAGCTGCTCGACTTGTCAGGGTGGGGGTGTTAGTGGTGACGAGATTGAATTTAAAAGACATAGGGGAAGGTCTGTAAAACGAAAGAGAGAGGAAACCAATAGAATCAAGGTTGAGAGTGGGACTGAGAGGAGTAGATATAGATCTAGGAGTCGTTCTTTGCGCAGTCATTATAGCAAGAGTGATTGTCAGAGTCAGGAAAGAGTGACCGGTGAGAGCAATGGGAGGAGATTGAGATCAGTTATTGCGGTAGCCGAAGAAGACCATGAAGGCAGATGGTTAGATGAGGATGGGCACAAAGAAGAGATTACATATGATCGTGATGATTGCCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGGAGCAAGAAGGAGTTGGATAATCATTTACATGTTGCATCCGAGGTGAGAATGAGGGTAGAGAGTGAGAAAGAGGAAGAAGCTCTTGTTTCTGATGCAGAAGGAATTAATTCTAGCCGTGATGGAACCATGATGACTGATCATGTTAATGAAAATAAGATCTCTGGGGAAATTAGTAGTTTGAAAGATGATGATCTGGAGACGATCTTAAGACAGAAGGCTTTAGAAAATCTAAAAAGGTTCAGAGGAAAGCCTCAAATGATTGCGGTAACTGATAATCAGGAAGATAAGAAGCAACCATCCGGTGCTAGGGCTGAATTGGTTCAAATAGACTCCCCCAAGGAGGATATTTCTGAAATAAATGGTCAAACCCGATTAGCAGAAGAGACCAATGGGCCTCCTGTGAAAGATTCCATTTGTGGAAATGAACCTGTCTCTGCCAAGCAAGATGTTGCTTGTCCAACACATCAAGAGCCTGTTGCTGGTATTTCCAAAATGGTTAGCACTACTGCTGTCGTAGATAAACCAAACTTGGCTGCGCCAAAATCAATGTCTGGTTCACTAAAAACTCACTCAACTTTGAAGCCAGCACTTGCTTCTCTGGAACCCCCTCAGGAAAGATTGTTGGTAACTGAGAGTAGTGTAGATAACACAGCTTCTGCTACTGCTCAAACTGTGACCCAAAGTAGCAATAATGATGCTCTAGACATCAGCAACGGTTCTGGTTCTACTGCTCCGGAACCTTCTGGGGAGAATAGGTCTGGTTTACAGCAAGATGAGGCTAAGGATGGTTCACAGTTTGAGCAGAAGACCATGTCTGTGATGCGAGGTAGTGAAATGGTACAGGTAAGCTACAAGGTTTACATCCCGAAGAAAGCTCCTGCTTTGGCGAGGAGGCACCTCAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

573

Amino Acids

64.01

Weight (kDa)

9.73

Isoelectric Point (pI)

77.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 1704
AccII CGCG 2 cut(s) 36, 138
AccIII TCCGGA 1 cut(s) 1543
AciI CCGC 2 cut(s) 692, 1073
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 1 cut(s) 1650
AfiI CCNNNNNNNGG 5 cut(s) 27, 394, 1116, 1150, 1289
AflII CTTAAG 1 cut(s) 1015
AflIII ACRYGT 1 cut(s) 838
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 4 cut(s) 494, 991, 1133, 1390
AhlI ACTAGT 1 cut(s) 422
AluBI AGCT 7 cut(s) 180, 204, 450, 890, 1463, 1659, 1685
AluI AGCT 7 cut(s) 180, 204, 450, 890, 1463, 1659, 1685
Alw26I GTCTC 4 cut(s) 321, 1001, 1187, 1246
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 1466
Aor13HI TCCGGA 1 cut(s) 1543
AoxI GGCC 2 cut(s) 3, 1202
ApeKI GCWGC 2 cut(s) 450, 1343
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 1343, 1375
AseI ATTAAT 1 cut(s) 915
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 3 cut(s) 388, 916, 1128
AspLEI GCGC 3 cut(s) 81, 609, 1348
AspS9I GGNCC 1 cut(s) 1202
AsuHPI GGTGA 3 cut(s) 494, 668, 865
AsuII TTCGAA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 1419
BaeGI GKGCMC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1704
BanII GRGCYC 2 cut(s) 235, 280
BbsI GAAGAC 2 cut(s) 711, 1622
BbvI GCAGC 2 cut(s) 437, 1330
BccI CCATC 6 cut(s) 30, 714, 728, 923, 1114, 1589
BceAI ACGGC 2 cut(s) 372, 909
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 4 cut(s) 321, 1001, 1187, 1246
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 6 cut(s) 417, 423, 591, 921, 1116, 1511
BfrI CTTAAG 1 cut(s) 1015
BglII AGATCT 3 cut(s) 287, 587, 966
BisI GCNGC 2 cut(s) 451, 1344
BlsI GCNGC 2 cut(s) 452, 1345
BmgT120I GGNCC 1 cut(s) 1202
BmiI GGNNCC 4 cut(s) 934, 1413, 1548, 1706
BmsI GCATC 4 cut(s) 854, 892, 1495, 1620
BpiI GAAGAC 2 cut(s) 711, 1622
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 1025
Bpu10I CCTNAGC 1 cut(s) 1590
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 202, 1694
BsaBI GATNNNNATC 3 cut(s) 586, 679, 999
BsaI GGTCTC 1 cut(s) 1187
BsaJI CCNNGG 2 cut(s) 849, 1146
BsaWI WCCGGW 3 cut(s) 653, 1109, 1543
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 1550, 1580
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 394, 1116, 1150, 1289
Bse118I RCCGGY 1 cut(s) 653
Bse21I CCTNAGG 1 cut(s) 1419
Bse3DI GCAATG 1 cut(s) 670
Bse8I GATNNNNATC 3 cut(s) 586, 679, 999
BseAI TCCGGA 1 cut(s) 1543
BseDI CCNNGG 2 cut(s) 849, 1146
BseGI GGATG 8 cut(s) 166, 172, 259, 739, 845, 1106, 1600, 1671
BseJI GATNNNNATC 3 cut(s) 586, 679, 999
BseLI CCNNNNNNNGG 5 cut(s) 27, 394, 1116, 1150, 1289
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 561, 1431, 1433
BseRI GAGGAG 5 cut(s) 85, 326, 589, 685, 1714
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 2 cut(s) 437, 1330
Bsh1236I CGCG 2 cut(s) 36, 138
BshFI GGCC 2 cut(s) 5, 1204
BshNI GGYRCC 1 cut(s) 1704
BshTI ACCGGT 1 cut(s) 653
BsiSI CCGG 3 cut(s) 654, 1110, 1544
BslFI GGGAC 2 cut(s) 309, 580
BslI CCNNNNNNNGG 5 cut(s) 27, 394, 1116, 1150, 1289
BsmAI GTCTC 4 cut(s) 321, 1001, 1187, 1246
BsmBI CGTCTC 1 cut(s) 1001
BsmFI GGGAC 2 cut(s) 309, 580
BsnI GGCC 2 cut(s) 5, 1204
Bso31I GGTCTC 1 cut(s) 1187
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 3 cut(s) 235, 280, 741
Bsp13I TCCGGA 1 cut(s) 1543
Bsp143I GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
Bsp68I TCGCGA 1 cut(s) 138
BspACI CCGC 2 cut(s) 692, 1073
BspANI GGCC 2 cut(s) 5, 1204
BspCNI CTCAG 3 cut(s) 562, 1432, 1432
BspEI TCCGGA 1 cut(s) 1543
BspFNI CGCG 2 cut(s) 36, 138
BspLI GGNNCC 4 cut(s) 934, 1413, 1548, 1706
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 1704
BspTI CTTAAG 1 cut(s) 1015
BspTNI GGTCTC 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 2 cut(s) 849, 1146
BssMI GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
BssT1I CCWWGG 1 cut(s) 1146
Bst4CI ACNGT 5 cut(s) 218, 797, 1483, 1526, 1605
Bst6I CTCTTC 8 cut(s) 19, 62, 266, 278, 332, 374, 741, 1185
BstAFI CTTAAG 1 cut(s) 1015
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 1395
BstDEI CTNAG 6 cut(s) 51, 405, 570, 1419, 1440, 1590
BstF5I GGATG 8 cut(s) 166, 172, 259, 739, 845, 1106, 1600, 1671
BstFNI CGCG 2 cut(s) 36, 138
BstHHI GCGC 3 cut(s) 81, 609, 1348
BstKTI GATC 9 cut(s) 119, 290, 590, 683, 763, 949, 969, 1003, 1014
BstMAI GTCTC 4 cut(s) 321, 1001, 1187, 1246
BstMBI GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
BstMWI GCNNNNNNNGC 1 cut(s) 1711
BstNSI RCATGY 1 cut(s) 842
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 2 cut(s) 36, 138
BstV1I GCAGC 2 cut(s) 437, 1330
BstV2I GAAGAC 2 cut(s) 711, 1622
BstX2I RGATCY 4 cut(s) 116, 287, 587, 966
BstYI RGATCY 4 cut(s) 116, 287, 587, 966
Bsu36I CCTNAGG 1 cut(s) 1419
BsuRI GGCC 2 cut(s) 5, 1204
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 8 cut(s) 166, 172, 259, 739, 845, 1106, 1600, 1671
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BtuMI TCGCGA 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 1395
CaiI CAGNNNCTG 1 cut(s) 1466
CfoI GCGC 3 cut(s) 81, 609, 1348
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 1202
Csp6I GTAC 1 cut(s) 1649
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 5 cut(s) 710, 839, 937, 950, 1621
CviQI GTAC 1 cut(s) 1649
DdeI CTNAG 6 cut(s) 51, 405, 570, 1419, 1440, 1590
DpnI GATC 9 cut(s) 118, 289, 589, 682, 762, 948, 968, 1002, 1013
DpnII GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
DraI TTTAAA 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 8 cut(s) 19, 62, 266, 278, 332, 374, 741, 1185
EarI CTCTTC 8 cut(s) 19, 62, 266, 278, 332, 374, 741, 1185
Eco130I CCWWGG 1 cut(s) 1146
Eco24I GRGCYC 2 cut(s) 235, 280
Eco31I GGTCTC 1 cut(s) 1187
Eco57I CTGAAG 1 cut(s) 353
Eco81I CCTNAGG 1 cut(s) 1419
EcoT14I CCWWGG 1 cut(s) 1146
EcoT38I GRGCYC 2 cut(s) 235, 280
ErhI CCWWGG 1 cut(s) 1146
Esp3I CGTCTC 1 cut(s) 1001
FaeI CATG 5 cut(s) 713, 842, 940, 953, 1624
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 2 cut(s) 309, 580
FatI CATG 5 cut(s) 709, 838, 936, 949, 1620
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 2 cut(s) 451, 1344
FokI GGATG 8 cut(s) 173, 179, 266, 746, 832, 1093, 1607, 1658
FriOI GRGCYC 2 cut(s) 235, 280
Fsp4HI GCNGC 2 cut(s) 451, 1344
FspBI CTAG 6 cut(s) 417, 423, 591, 921, 1116, 1511
FspI TGCGCA 1 cut(s) 608
GlaI GCGC 3 cut(s) 80, 608, 1347
GluI GCNGC 2 cut(s) 451, 1344
GsuI CTGGAG 1 cut(s) 1025
HaeIII GGCC 2 cut(s) 5, 1204
HapII CCGG 3 cut(s) 654, 1110, 1544
HhaI GCGC 3 cut(s) 81, 609, 1348
Hin1II CATG 5 cut(s) 713, 842, 940, 953, 1624
Hin6I GCGC 3 cut(s) 79, 607, 1346
HinP1I GCGC 3 cut(s) 79, 607, 1346
HindIII AAGCTT 1 cut(s) 178
HpaII CCGG 3 cut(s) 654, 1110, 1544
HphI GGTGA 3 cut(s) 494, 668, 865
Hpy166II GTNNAC 5 cut(s) 239, 1367, 1574, 1601, 1669
Hpy8I GTNNAC 5 cut(s) 239, 1367, 1574, 1601, 1669
Hpy99I CGWCG 3 cut(s) 41, 135, 138
HpyCH4III ACNGT 5 cut(s) 218, 797, 1483, 1526, 1605
HpyCH4V TGCA 2 cut(s) 845, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 1711
HpyF3I CTNAG 6 cut(s) 51, 405, 570, 1419, 1440, 1590
Hsp92II CATG 5 cut(s) 713, 842, 940, 953, 1624
HspAI GCGC 3 cut(s) 79, 607, 1346
Kpn2I TCCGGA 1 cut(s) 1543
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
LmnI GCTCC 4 cut(s) 447, 810, 1546, 1690
Lsp1109I GCAGC 2 cut(s) 437, 1330
LweI GCATC 4 cut(s) 854, 892, 1495, 1620
MaeI CTAG 6 cut(s) 417, 423, 591, 921, 1116, 1511
MaeIII GTNAC 7 cut(s) 212, 263, 482, 649, 1075, 1435, 1483
MalI GATC 9 cut(s) 118, 289, 589, 682, 762, 948, 968, 1002, 1013
MboI GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
MflI RGATCY 4 cut(s) 116, 287, 587, 966
MhlI GDGCHC 3 cut(s) 235, 280, 741
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 494, 912, 916, 978, 1124
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 323, 449, 604, 646, 1133
MmeI TCCRAC 2 cut(s) 804, 1292
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 1543
MroXI GAANNNNTTC 3 cut(s) 388, 916, 1128
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 360, 498, 915, 954, 1016
MslI CAYNNNNRTG 3 cut(s) 837, 954, 1625
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 1015
MspI CCGG 3 cut(s) 654, 1110, 1544
MvnI CGCG 2 cut(s) 36, 138
MwoI GCNNNNNNNGC 1 cut(s) 1711
NdeI CATATG 1 cut(s) 757
NdeII GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
NlaIII CATG 5 cut(s) 713, 842, 940, 953, 1624
NlaIV GGNNCC 4 cut(s) 934, 1413, 1548, 1706
NmuCI GTSAC 4 cut(s) 212, 482, 649, 1483
NruI TCGCGA 1 cut(s) 138
NsbI TGCGCA 1 cut(s) 608
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 58
PciI ACATGT 1 cut(s) 838
PdmI GAANNNNTTC 3 cut(s) 388, 916, 1128
PfeI GAWTC 5 cut(s) 143, 170, 191, 549, 1217
PflFI GACNNNGTC 1 cut(s) 1621
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 2 cut(s) 452, 1345
PleI GAGTC 5 cut(s) 322, 448, 603, 645, 1133
PpsI GAGTC 5 cut(s) 322, 448, 603, 645, 1133
PscI ACATGT 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 915
PspN4I GGNNCC 4 cut(s) 934, 1413, 1548, 1706
PspPI GGNCC 1 cut(s) 1202
PstNI CAGNNNCTG 1 cut(s) 1466
PsuI RGATCY 4 cut(s) 116, 287, 587, 966
PsyI GACNNNGTC 1 cut(s) 1621
RruI TCGCGA 1 cut(s) 138
RsaI GTAC 1 cut(s) 1650
RsaNI GTAC 1 cut(s) 1649
RseI CAYNNNNRTG 3 cut(s) 837, 954, 1625
SaqAI TTAA 5 cut(s) 360, 498, 915, 954, 1016
SatI GCNGC 2 cut(s) 451, 1344
Sau3AI GATC 9 cut(s) 116, 287, 587, 680, 760, 946, 966, 1000, 1011
Sau96I GGNCC 1 cut(s) 1202
SchI GAGTC 5 cut(s) 323, 449, 604, 646, 1133
SduI GDGCHC 3 cut(s) 235, 280, 741
SfaNI GCATC 4 cut(s) 854, 892, 1495, 1620
SfuI TTCGAA 1 cut(s) 58
SmiMI CAYNNNNRTG 3 cut(s) 837, 954, 1625
SmlI CTYRAG 3 cut(s) 181, 1015, 1709
SmoI CTYRAG 3 cut(s) 181, 1015, 1709
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 5 cut(s) 494, 912, 916, 978, 1124
SsiI CCGC 2 cut(s) 692, 1073
SspMI CTAG 6 cut(s) 417, 423, 591, 921, 1116, 1511
StyI CCWWGG 1 cut(s) 1146
TaaI ACNGT 5 cut(s) 218, 797, 1483, 1526, 1605
TaqI TCGA 3 cut(s) 58, 392, 455
TasI AATT 5 cut(s) 494, 912, 916, 978, 1124
TfiI GAWTC 5 cut(s) 143, 170, 191, 549, 1217
Tru1I TTAA 5 cut(s) 360, 498, 915, 954, 1016
Tru9I TTAA 5 cut(s) 360, 498, 915, 954, 1016
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 4 cut(s) 212, 482, 649, 1483
TseI GCWGC 2 cut(s) 450, 1343
Tsp45I GTSAC 4 cut(s) 212, 482, 649, 1483
TspDTI ATGAA 3 cut(s) 726, 972, 1248
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 1 cut(s) 304
Tth111I GACNNNGTC 1 cut(s) 1621
Vha464I CTTAAG 1 cut(s) 1015
VspI ATTAAT 1 cut(s) 915
XapI RAATTY 1 cut(s) 494
XbaI TCTAGA 1 cut(s) 1510
XceI RCATGY 1 cut(s) 842
XmnI GAANNNNTTC 3 cut(s) 388, 916, 1128
XspI CTAG 6 cut(s) 417, 423, 591, 921, 1116, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.