Prupe.4G176400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
10447006 .. 10450240
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G176400.1

Sequence Viewer

Length: 1875 bp
ATGGGCAAGTCTTCTTCTTCTCATCGAAAGAAACGCGCCAAGATTTCTTCTCAGGCAGGAACAAGGAAGAGCAGTAAGAGTAAGCCTAAAAGTAGGAAATATAGATCCAAGAAGCTTCGCCGCCGTGACGATTCTCCTTCTCATTCTGATGACGGTGATTCGAGAAGTTTAGAATCTGTTTCGTCTTTTAGTTCAGATGATGATTCTAGAAGTAGACGGGCTCGGTCCCGCACTAGGAGGGATCTGAAAGGTAGCAAGAAAAGGGCTCGCAGACGCTCCCATATCCATGACAGTAGCGAGGACTCTCCCCGTGGAAAGAAGAGGAAATCGGCAAAGAATAAGAATGATTATGAGGCGAGGAAGAAATCCCGTTCGAGGAAGAAGCCTAGGAGAAATGCTAGCATTAGTTCCAGGAGTAGTGCTTCTTTTAGTTGCTCAACTTGTCCTAGTGGAAGTATTTGTGGTGATGAGATTGAATCTAAAAGGCACAGGGGCAGACCTGGAAAACGAAACAGAGATGAAAGTGATATTAACAAGGTTGAAAGTGGGACTAAGAGGGCTAGATATAGGTCAAAGAGCTGTTCTTCTCACAGTCAGTGTAGCGGGCGTGGTGGTGATAGTCAGAGTGAGGAAAAAGTGACATTTGAAAACAAATTGAGGAGGTTGAGATCAGTTATTACTGTCACAGAAGAAGACAAGCATGGCAGATGGATGGATAAGGATGGGCACAAAGAAGAGATGGCATATGATGATGATTACCCTTCTTGTAGAAGTAATGATAGTAATGATGGAGGGTGCAAGAGGGAGTTGGATAATCATTTACATGTTGTTGAGAAGAGAATAGGAGTGGAGAGTGGGAAAGAGGAAAAAGCTCTTATTTCTAATGTTCCAATCGAAGATCTCACAGATAGTGGTAACATTTTTGAAAAGCATTATGGTGGCCAAGATGATGGAATTAACTCTAGCCGTGATGGAATAGGAATTGCTGGTCCTGTTAATGAAAATACGAAAGAGGTTTCTGGGGCAATTAGTCATCTGCCAGGTGAAGATCTGGAGTCAATTTTAAGACAAAGGGCTTTGGAAAATCTAAAAAGGTTCAAAGGAACTACTAGTGAGGAAAACAAGAGCAATAATGATTTGAAACAGCCATCCACTGTAAAGGCTGATTTTGTTCAAATAGAATCCCCAAAGGAGAGTGGTGCTAGAGCGGTTGTTGCAAAGTCCTCCAAGGAGGGTGCTACTGAAATGGTTGTTGCAAAGTCCTCCAAGGAGGATGCTGCTGAAATGGTTGATACAACCCAATTACTAGAAAATGCCAATGGGCCTCCGGTGAGAGATCCCATTGTTTCTTCCAAAAATCTTAAAAAGGAACTGGATAGGACTAGTGGTAGCAATGAATTGCAAGATGTTGCTTGCCCAACATATCAGGTGGCTCTTGGAAATTCCGATAAAAAGGTTGACACAATTGCAGTGCTTAATAAACCGAACTTGGCTTCACCAAAATTGAGGTGCCACTCAGCAAAAGCTCATTCCACGTGGAAACAAGCAGCTCGTTCGCAGGAACCTCCCCATGAAAGATTATTGGTGATTGAGAATAGTGTAGATAAGAGTACTTCTGAGACTGCCCAAACTGTGCCCCAAACCCAAAGTACCTATAGTAATGGTGATGATATCAATGACGACCGTGGTTGTACTGCTCCTGAACCTTCGGGAGAGAATAGGTCTGATAAACAGCAAGGTGAGGGTAAGGATGGCTCACAGTTTGAGCAGAAAACCATGTCTGTCATGCGAGGTAGTGAAATGGTACAGGTGAGTTACAAGGTTTACATCCCTAAGAAAGCTCCTGGTCTGGCGAGGAGGCAACTCAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

625

Amino Acids

69.25

Weight (kDa)

9.66

Isoelectric Point (pI)

72.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1509
AccBSI CCGCTC 1 cut(s) 1208
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 36
AciI CCGC 5 cut(s) 121, 229, 603, 1208, 1870
AclWI GGATC 3 cut(s) 99, 249, 1331
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 1 cut(s) 1441
AcvI CACGTG 1 cut(s) 1536
AfaI GTAC 4 cut(s) 1612, 1651, 1693, 1806
AfiI CCNNNNNNNGG 2 cut(s) 234, 375
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 7 cut(s) 476, 542, 647, 926, 1099, 1141, 1175
AhlI ACTAGT 2 cut(s) 1109, 1382
AjnI CCWGG 4 cut(s) 410, 499, 1039, 1843
AluBI AGCT 6 cut(s) 115, 579, 872, 1526, 1550, 1841
AluI AGCT 6 cut(s) 115, 579, 872, 1526, 1550, 1841
Alw26I GTCTC 1 cut(s) 1613
AlwI GGATC 3 cut(s) 99, 249, 1331
AoxI GGCC 2 cut(s) 940, 1322
ApeKI GCWGC 2 cut(s) 1277, 1547
ApoI RAATTY 1 cut(s) 1441
AspA2I CCTAGG 1 cut(s) 386
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 3 cut(s) 225, 989, 1322
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 2 cut(s) 225, 989
AvrII CCTAGG 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 729, 1638
BalI TGGCCA 1 cut(s) 942
BanI GGYRCC 1 cut(s) 1509
BanII GRGCYC 2 cut(s) 223, 268
BbrPI CACGTG 1 cut(s) 1536
BbsI GAAGAC 2 cut(s) 3, 699
BbvI GCAGC 2 cut(s) 1264, 1559
BccI CCATC 9 cut(s) 702, 706, 716, 733, 782, 944, 965, 1156, 1745
BceAI ACGGC 2 cut(s) 108, 951
BcgI CGANNNNNNTGC 2 cut(s) 1536, 1570
BciT130I CCWGG 4 cut(s) 412, 501, 1041, 1845
BcoDI GTCTC 1 cut(s) 1613
BcuI ACTAGT 2 cut(s) 1109, 1382
BfmI CTRYAG 1 cut(s) 1654
BglII AGATCT 2 cut(s) 898, 1048
BisI GCNGC 3 cut(s) 121, 1278, 1548
BlnI CCTAGG 1 cut(s) 386
BlsI GCNGC 3 cut(s) 122, 1279, 1549
BmcAI AGTACT 1 cut(s) 1612
Bme1390I CCNGG 4 cut(s) 412, 501, 1041, 1845
Bme18I GGWCC 2 cut(s) 225, 989
BmgT120I GGNCC 3 cut(s) 225, 989, 1322
BmiI GGNNCC 3 cut(s) 227, 1511, 1563
BmrFI CCNGG 4 cut(s) 412, 501, 1041, 1845
BmsI GCATC 1 cut(s) 1264
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 3, 699
BpmI CTGGAG 1 cut(s) 1073
BsaAI YACGTR 1 cut(s) 1536
BsaJI CCNNGG 5 cut(s) 310, 386, 1227, 1266, 1684
BsaWI WCCGGW 1 cut(s) 1327
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 375
Bse1I ACTGG 1 cut(s) 1377
Bse3DI GCAATG 1 cut(s) 1399
BseBI CCWGG 4 cut(s) 412, 501, 1041, 1845
BseDI CCNNGG 5 cut(s) 310, 386, 1227, 1266, 1684
BseGI GGATG 6 cut(s) 717, 727, 1148, 1279, 1756, 1827
BseLI CCNNNNNNNGG 2 cut(s) 234, 375
BseMI GCAATG 1 cut(s) 1399
BseMII CTCAG 3 cut(s) 65, 1530, 1608
BseNI ACTGG 1 cut(s) 1377
BseRI GAGGAG 2 cut(s) 673, 1870
BseSI GKGCMC 2 cut(s) 729, 1638
BseXI GCAGC 2 cut(s) 1264, 1559
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 1684
BshFI GGCC 2 cut(s) 942, 1324
BshNI GGYRCC 1 cut(s) 1509
BsiEI CGRYCG 1 cut(s) 1684
BsiSI CCGG 1 cut(s) 1328
BslFI GGGAC 2 cut(s) 211, 562
BslI CCNNNNNNNGG 2 cut(s) 234, 375
BsmAI GTCTC 1 cut(s) 1613
BsmFI GGGAC 2 cut(s) 211, 562
BsnI GGCC 2 cut(s) 942, 1324
Bsp1286I GDGCHC 4 cut(s) 223, 268, 729, 1638
Bsp143I GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
BspACI CCGC 5 cut(s) 121, 229, 603, 1208, 1870
BspANI GGCC 2 cut(s) 942, 1324
BspCNI CTCAG 3 cut(s) 64, 1529, 1609
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 227, 1511, 1563
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 3 cut(s) 99, 249, 1331
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 1509
BsrBI CCGCTC 1 cut(s) 1208
BsrDI GCAATG 1 cut(s) 1399
BsrI ACTGG 1 cut(s) 1377
BssECI CCNNGG 5 cut(s) 310, 386, 1227, 1266, 1684
BssMI GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
BssT1I CCWWGG 3 cut(s) 386, 1227, 1266
Bst2UI CCWGG 4 cut(s) 412, 501, 1041, 1845
Bst4CI ACNGT 8 cut(s) 155, 293, 593, 682, 1156, 1633, 1685, 1761
Bst6I CTCTTC 4 cut(s) 62, 314, 729, 830
BstBAI YACGTR 1 cut(s) 1536
BstC8I GCNNGC 4 cut(s) 268, 400, 605, 1414
BstDEI CTNAG 6 cut(s) 51, 552, 1516, 1617, 1833, 1865
BstDSI CCRYGG 2 cut(s) 310, 1684
BstF5I GGATG 6 cut(s) 717, 727, 1148, 1279, 1756, 1827
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 6 cut(s) 107, 244, 671, 901, 1051, 1339
BstMAI GTCTC 1 cut(s) 1613
BstMBI GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
BstMCI CGRYCG 1 cut(s) 1684
BstMWI GCNNNNNNNGC 2 cut(s) 1214, 1867
BstNI CCWGG 4 cut(s) 412, 501, 1041, 1845
BstNSI RCATGY 1 cut(s) 827
BstSCI CCNGG 4 cut(s) 410, 499, 1039, 1843
BstSFI CTRYAG 1 cut(s) 1654
BstSLI GKGCMC 2 cut(s) 729, 1638
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 1264, 1559
BstV2I GAAGAC 2 cut(s) 3, 699
BstX2I RGATCY 5 cut(s) 104, 241, 898, 1048, 1336
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 5 cut(s) 104, 241, 898, 1048, 1336
BsuRI GGCC 2 cut(s) 942, 1324
BtgI CCRYGG 2 cut(s) 310, 1684
BtsCI GGATG 6 cut(s) 717, 727, 1148, 1279, 1756, 1827
BtsI GCAGTG 1 cut(s) 1476
BtsIMutI CAGTG 3 cut(s) 602, 1152, 1476
Cac8I GCNNGC 4 cut(s) 268, 400, 605, 1414
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 3 cut(s) 225, 989, 1322
CseI GACGC 1 cut(s) 282
Csp6I GTAC 4 cut(s) 1611, 1650, 1692, 1805
CviAII CATG 6 cut(s) 287, 701, 824, 1571, 1777, 1786
CviQI GTAC 4 cut(s) 1611, 1650, 1692, 1805
DdeI CTNAG 6 cut(s) 51, 552, 1516, 1617, 1833, 1865
DpnI GATC 6 cut(s) 106, 243, 670, 900, 1050, 1338
DpnII GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 4 cut(s) 62, 314, 729, 830
EarI CTCTTC 4 cut(s) 62, 314, 729, 830
Eco130I CCWWGG 3 cut(s) 386, 1227, 1266
Eco24I GRGCYC 2 cut(s) 223, 268
Eco32I GATATC 1 cut(s) 1672
Eco47I GGWCC 2 cut(s) 225, 989
Eco72I CACGTG 1 cut(s) 1536
EcoRII CCWGG 4 cut(s) 410, 499, 1039, 1843
EcoRV GATATC 1 cut(s) 1672
EcoT14I CCWWGG 3 cut(s) 386, 1227, 1266
EcoT38I GRGCYC 2 cut(s) 223, 268
ErhI CCWWGG 3 cut(s) 386, 1227, 1266
FaeI CATG 6 cut(s) 290, 704, 827, 1574, 1780, 1789
FaqI GGGAC 2 cut(s) 211, 562
FatI CATG 6 cut(s) 286, 700, 823, 1570, 1776, 1785
FauI CCCGC 2 cut(s) 236, 596
FauNDI CATATG 1 cut(s) 745
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 121, 1278, 1548
FokI GGATG 6 cut(s) 724, 734, 1135, 1286, 1763, 1814
FriOI GRGCYC 2 cut(s) 223, 268
Fsp4HI GCNGC 3 cut(s) 121, 1278, 1548
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 121, 1278, 1548
GsuI CTGGAG 1 cut(s) 1073
HaeIII GGCC 2 cut(s) 942, 1324
HapII CCGG 1 cut(s) 1328
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 38
Hin1II CATG 6 cut(s) 290, 704, 827, 1574, 1780, 1789
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 1459
HindII GTYRAC 1 cut(s) 1459
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 8 cut(s) 131, 158, 173, 203, 302, 476, 1055, 1181
HpaII CCGG 1 cut(s) 1328
Hpy166II GTNNAC 3 cut(s) 215, 1459, 1825
Hpy188I TCNGA 7 cut(s) 148, 196, 246, 624, 1447, 1618, 1726
Hpy188III TCNNGA 5 cut(s) 162, 207, 1052, 1700, 1710
Hpy8I GTNNAC 3 cut(s) 215, 1459, 1825
HpyAV CCTTC 3 cut(s) 147, 771, 1716
HpyCH4III ACNGT 8 cut(s) 155, 293, 593, 682, 1156, 1633, 1685, 1761
HpyCH4IV ACGT 1 cut(s) 1535
HpyCH4V TGCA 5 cut(s) 798, 1217, 1256, 1402, 1469
HpyF10VI GCNNNNNNNGC 2 cut(s) 1214, 1867
HpyF3I CTNAG 6 cut(s) 51, 552, 1516, 1617, 1833, 1865
HpySE526I ACGT 1 cut(s) 1535
Hsp92II CATG 6 cut(s) 290, 704, 827, 1574, 1780, 1789
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 281, 1702, 1846
Lsp1109I GCAGC 2 cut(s) 1264, 1559
LweI GCATC 1 cut(s) 1264
MaeII ACGT 1 cut(s) 1535
MaeIII GTNAC 5 cut(s) 125, 637, 682, 914, 1814
MalI GATC 6 cut(s) 106, 243, 670, 900, 1050, 1338
MbiI CCGCTC 1 cut(s) 1208
MboI GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
MfeI CAATTG 1 cut(s) 1464
MflI RGATCY 5 cut(s) 104, 241, 898, 1048, 1336
MhlI GDGCHC 4 cut(s) 223, 268, 729, 1638
MlsI TGGCCA 1 cut(s) 942
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 2 cut(s) 296, 1064
MmeI TCCRAC 1 cut(s) 789
Mox20I TGGCCA 1 cut(s) 942
MscI TGGCCA 1 cut(s) 942
MseI TTAA 6 cut(s) 531, 957, 996, 1064, 1362, 1476
MslI CAYNNNNRTG 4 cut(s) 147, 285, 822, 936
Msp20I TGGCCA 1 cut(s) 942
MspI CCGG 1 cut(s) 1328
MspR9I CCNGG 4 cut(s) 412, 501, 1041, 1845
MunI CAATTG 1 cut(s) 1464
MvaI CCWGG 4 cut(s) 412, 501, 1041, 1845
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 1214, 1867
NdeI CATATG 1 cut(s) 745
NdeII GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 6 cut(s) 290, 704, 827, 1574, 1780, 1789
NlaIV GGNNCC 3 cut(s) 227, 1511, 1563
NmuCI GTSAC 3 cut(s) 125, 637, 682
NspI RCATGY 1 cut(s) 827
PciI ACATGT 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 62
PfeI GAWTC 6 cut(s) 131, 158, 173, 203, 476, 1181
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 3 cut(s) 122, 1279, 1549
PleI GAGTC 2 cut(s) 296, 1063
PmaCI CACGTG 1 cut(s) 1536
PmlI CACGTG 1 cut(s) 1536
PpsI GAGTC 2 cut(s) 296, 1063
Ppu21I YACGTR 1 cut(s) 1536
PscI ACATGT 1 cut(s) 823
Psp6I CCWGG 4 cut(s) 410, 499, 1039, 1843
PspCI CACGTG 1 cut(s) 1536
PspGI CCWGG 4 cut(s) 410, 499, 1039, 1843
PspN4I GGNNCC 3 cut(s) 227, 1511, 1563
PspPI GGNCC 3 cut(s) 225, 989, 1322
PsuI RGATCY 5 cut(s) 104, 241, 898, 1048, 1336
RsaI GTAC 4 cut(s) 1612, 1651, 1693, 1806
RsaNI GTAC 4 cut(s) 1611, 1650, 1692, 1805
RseI CAYNNNNRTG 4 cut(s) 147, 285, 822, 936
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 6 cut(s) 531, 957, 996, 1064, 1362, 1476
SatI GCNGC 3 cut(s) 121, 1278, 1548
Sau3AI GATC 6 cut(s) 104, 241, 668, 898, 1048, 1336
Sau96I GGNCC 3 cut(s) 225, 989, 1322
ScaI AGTACT 1 cut(s) 1612
SchI GAGTC 2 cut(s) 296, 1064
ScrFI CCNGG 4 cut(s) 412, 501, 1041, 1845
SduI GDGCHC 4 cut(s) 223, 268, 729, 1638
SfaNI GCATC 1 cut(s) 1264
SfcI CTRYAG 1 cut(s) 1654
SinI GGWCC 2 cut(s) 225, 989
SmiMI CAYNNNNRTG 4 cut(s) 147, 285, 822, 936
SpeI ACTAGT 2 cut(s) 1109, 1382
SsiI CCGC 5 cut(s) 121, 229, 603, 1208, 1870
StyD4I CCNGG 4 cut(s) 410, 499, 1039, 1843
StyI CCWWGG 3 cut(s) 386, 1227, 1266
TaaI ACNGT 8 cut(s) 155, 293, 593, 682, 1156, 1633, 1685, 1761
TaiI ACGT 1 cut(s) 1538
TaqI TCGA 4 cut(s) 25, 161, 374, 894
TaqII GACCGA 1 cut(s) 213
TatI WGTACW 2 cut(s) 1610, 1691
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 6 cut(s) 131, 158, 173, 203, 476, 1181
Tru1I TTAA 6 cut(s) 531, 957, 996, 1064, 1362, 1476
Tru9I TTAA 6 cut(s) 531, 957, 996, 1064, 1362, 1476
TscAI CASTG 3 cut(s) 602, 1159, 1476
TseFI GTSAC 3 cut(s) 125, 637, 682
TseI GCWGC 2 cut(s) 1277, 1547
Tsp45I GTSAC 3 cut(s) 125, 637, 682
TspDTI ATGAA 4 cut(s) 534, 1014, 1410, 1587
TspRI CASTG 3 cut(s) 602, 1159, 1476
VpaK11BI GGWCC 2 cut(s) 225, 989
XapI RAATTY 1 cut(s) 1441
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 827
XmaJI CCTAGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.