MD11G1252600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
36489523 .. 36491839
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1252600.v1.1.491

Sequence Viewer

Length: 1803 bp
ATGGGCAAGTCCTCTTCTTCTCGTACCAAGAAACGCTCCAATGTTTCCTCCGAGGCTCGAACAAGGAAGAAAAGTAAGAGTAAGACCAAAACAAGGGAATATAGATCCAAGAAGCTTCGCCGTCGTGACGATTCTTCTTCTTATTCCGGTGAGGATGATTCAAGAAGTTTGAAATCGTTATCGTCTTTTAGCTCAGATGATGATTTGAGAAGTAGAAGGGCTCGATCGCGCGCTAGGAAGGATGCAAAAGGGAGCAAGAAGAGGGCTCAGAGACGATCTTATAGCCCTGACAGCAGCGGGGACTCTCCCCGTAGAAAGAAGAGGAAATTGGCAAAGAAGAAGAATGATAAGAAAACGCATTTGAGGAAGAAGCCTAGGAGGAATGTTAGCGTTAGTTCCAGGAGTAGCGCGTCGTTTAGGTGCTCAACTTGTCCGAGTGAGAGTATTAGCGGTGATGAGATTGAATCTAAGAGGCATAGGGGCAGACCTGGAAAACGAAACAGAGTTGAAAGTGGGATTAACAAGGTTGAAAGTGGGACTAAGAAGGCTAGGTATAGGTCAAGGAGTTGTTCTTTGTGCAGTCAGCGTAGCGAGAGTGGTGATTGTCGGAGTGAGGAAAAAGTGACATATGAGAACAATTCGAGGAGGTTGAGATCTGTAGTTACGGTAGCAGAAGAAAACGAGCATGGAAGATGGATGGATACGGATGCGCACAAAGAAGAGATTACATATGATGACGACTACCCTTCTTGTAGGAGTAATGATAGTAATGATGGAGGGGGCAAGAGGGAGTTGGATGATCGTTTGGATGTTGCATTTGAGAAGAGAACGGAAGTAGAGAGTGGGAAAGAGGAAGAAGCTTATGTTTCTAATGTTCTAGTCATGGATCTCAAAGATAGTTGTAACATTTTGGAAAAAGATTGTACGGGCCAAGATGATGGAATCGGGATTTCTGGTCCTGCTAATGAAAATAAGAATGAGGTTTCTGGGGCAATCATTAGTCTGCCAGGTGAGGATCTGGAATCAATTTTAAGACAAAGGGCTTTGGAAAATCTAAAAAGGTTCAAAGGAAAGCATCAAAGAATTTCAGCGGTAACTACCAATCAGGAAGACAAGACCGACATTGATTTGACACAGCCGTCCACTGCAAAGGTTGAATTGGTTCAAATAGAATCGCCCAGGGAGGGTGGTGCTAGAGTGGTTGTAGCAAAGTCATCCGAGGAGGATGTTGCTGAAAGGGTTGATGCAACGCAATCAGTAGAAGAGGCCAATGGGCCTCAAGAGAGAGTTTCCATTCTTTCTTCCCAAAACCTGAAAAAGGAACCCGATAGGATTAATAGTGGCAGTGAATTTATCTCTGCCAAGCAAGATGTTGCTTGTCCAATAGAGCAAGTTGGTTGTCCAATAGAGCAAGTGGCTGTCGGCAGAAAGATTAAGACCACTGCTTCGCTCTATAAACCAAACTCGACTTCACCAACCTTGAGGGGCCATTTGCTAGAAGCTCACCAAACGCTGAAACAAGAACCTGCTTCGCAGGAACCTCCCGAGGAAGGATTGTTGGTGAGTGAGAGTAATGTAGATAAGGGTGCTTCTGATATTGCCCAAACCGTGCCCCAAAGAAGCAATAGAAACGGTGAAGATGTCAAAGATAGTTCTGATATACAGCAAGATGAAGCTACTGATGGCTCACAGTTTGAGCAGAAAACAATGTCGGTGATGCGAGGTAGCGAAATGGTACAGGTGGGTGTTTTGATCCGTCACAAATTTGCTTACTTCTCTTTCTGTATTACCGGATGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

601

Amino Acids

66.88

Weight (kDa)

9.23

Isoelectric Point (pI)

72.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1138
Acc16I TGCGCA 1 cut(s) 711
Acc36I ACCTGC 1 cut(s) 1534
AccII CGCG 3 cut(s) 229, 231, 410
AciI CCGC 3 cut(s) 297, 450, 1091
AclWI GGATC 4 cut(s) 99, 894, 1023, 1747
AcsI RAATTY 3 cut(s) 1083, 1349, 1763
AfaI GTAC 3 cut(s) 25, 925, 1737
AfiI CCNNNNNNNGG 4 cut(s) 93, 1184, 1318, 1550
AgsI TTSAA 8 cut(s) 162, 172, 464, 509, 530, 1066, 1157, 1166
AjnI CCWGG 4 cut(s) 398, 487, 1006, 1178
AjuI GAANNNNNNNTTGG 4 cut(s) 311, 343, 1453, 1485
AluBI AGCT 5 cut(s) 115, 192, 860, 1502, 1676
AluI AGCT 5 cut(s) 115, 192, 860, 1502, 1676
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 4 cut(s) 99, 894, 1023, 1747
Ama87I CYCGRG 1 cut(s) 1544
AoxI GGCC 4 cut(s) 928, 1266, 1274, 1486
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 3 cut(s) 1083, 1349, 1763
ArsI GACNNNNNNTTYG 2 cut(s) 1429, 1461
AseI ATTAAT 1 cut(s) 1335
Asp700I GAANNNNTTC 1 cut(s) 1161
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 4 cut(s) 231, 233, 410, 712
AspS9I GGNCC 4 cut(s) 928, 956, 1274, 1486
AsuHPI GGTGA 9 cut(s) 161, 464, 611, 1022, 1464, 1496, 1573, 1646, 1726
AvaI CYCGRG 1 cut(s) 1544
AvaII GGWCC 1 cut(s) 956
AvrII CCTAGG 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 1614
BanII GRGCYC 2 cut(s) 223, 268
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 306
BccI CCATC 5 cut(s) 687, 691, 767, 932, 1676
BceAI ACGGC 2 cut(s) 105, 1123
BciT130I CCWGG 4 cut(s) 400, 489, 1008, 1180
BciVI GTATCC 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 6 cut(s) 234, 375, 549, 878, 1194, 1496
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 1534
BfuI GTATCC 1 cut(s) 694
BglII AGATCT 1 cut(s) 653
BisI GCNGC 1 cut(s) 295
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 1 cut(s) 296
Bme1390I CCNGG 4 cut(s) 400, 489, 1008, 1180
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 1544
BmgT120I GGNCC 4 cut(s) 928, 956, 1274, 1486
BmiI GGNNCC 3 cut(s) 1323, 1487, 1539
BmrFI CCNGG 4 cut(s) 400, 489, 1008, 1180
BmsI GCATC 5 cut(s) 232, 697, 1084, 1234, 1707
BpiI GAAGAC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 1263, 1501
BsaJI CCNNGG 6 cut(s) 51, 374, 1178, 1179, 1218, 1545
BsaWI WCCGGW 2 cut(s) 146, 1790
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 1184, 1318, 1550
BseBI CCWGG 4 cut(s) 400, 489, 1008, 1180
BseDI CCNNGG 6 cut(s) 51, 374, 1178, 1179, 1218, 1545
BseGI GGATG 9 cut(s) 160, 247, 702, 712, 802, 814, 1214, 1231, 1799
BseLI CCNNNNNNNGG 4 cut(s) 93, 1184, 1318, 1550
BseMII CTCAG 2 cut(s) 207, 281
BsePI GCGCGC 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 658, 1235
BseSI GKGCMC 1 cut(s) 1614
BseXI GCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 598
Bsh1236I CGCG 3 cut(s) 229, 231, 410
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 4 cut(s) 930, 1268, 1276, 1488
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 1544
BsiSI CCGG 2 cut(s) 147, 1791
BslFI GGGAC 3 cut(s) 314, 550, 1782
BslI CCNNNNNNNGG 4 cut(s) 93, 1184, 1318, 1550
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 3 cut(s) 314, 550, 1782
BsnI GGCC 4 cut(s) 930, 1268, 1276, 1488
BsoBI CYCGRG 1 cut(s) 1544
Bsp1286I GDGCHC 4 cut(s) 223, 268, 425, 1614
Bsp143I GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
BspACI CCGC 3 cut(s) 297, 450, 1091
BspANI GGCC 4 cut(s) 930, 1268, 1276, 1488
BspCNI CTCAG 2 cut(s) 206, 280
BspFNI CGCG 3 cut(s) 229, 231, 410
BspLI GGNNCC 3 cut(s) 1323, 1487, 1539
BspMI ACCTGC 1 cut(s) 1534
BspPI GGATC 4 cut(s) 99, 894, 1023, 1747
BssECI CCNNGG 6 cut(s) 51, 374, 1178, 1179, 1218, 1545
BssHII GCGCGC 1 cut(s) 229
BssMI GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
BssT1I CCWWGG 1 cut(s) 374
Bst2UI CCWGG 4 cut(s) 400, 489, 1008, 1180
Bst4CI ACNGT 4 cut(s) 667, 1609, 1634, 1692
Bst6I CTCTTC 6 cut(s) 19, 254, 314, 714, 818, 1257
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 4 cut(s) 193, 267, 468, 540
BstENI CCTNNNNNAGG 1 cut(s) 1316
BstF5I GGATG 9 cut(s) 160, 247, 702, 712, 802, 814, 1214, 1231, 1799
BstFNI CGCG 3 cut(s) 229, 231, 410
BstHHI GCGC 4 cut(s) 231, 233, 410, 712
BstKTI GATC 8 cut(s) 107, 227, 278, 656, 802, 889, 1018, 1755
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 4 cut(s) 400, 489, 1008, 1180
BstSCI CCNGG 4 cut(s) 398, 487, 1006, 1178
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 1614
BstUI CGCG 3 cut(s) 229, 231, 410
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 4 cut(s) 104, 653, 886, 1015
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 4 cut(s) 104, 653, 886, 1015
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 4 cut(s) 930, 1268, 1276, 1488
BtsCI GGATG 9 cut(s) 160, 247, 702, 712, 802, 814, 1214, 1231, 1799
BtsI GCAGTG 3 cut(s) 1143, 1351, 1440
BtsIMutI CAGTG 3 cut(s) 1143, 1351, 1440
BveI ACCTGC 1 cut(s) 1534
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 4 cut(s) 231, 233, 410, 712
Cfr13I GGNCC 4 cut(s) 928, 956, 1274, 1486
CseI GACGC 1 cut(s) 399
Csp6I GTAC 3 cut(s) 24, 924, 1736
CviAII CATG 2 cut(s) 686, 883
CviQI GTAC 3 cut(s) 24, 924, 1736
DdeI CTNAG 4 cut(s) 193, 267, 468, 540
DpnI GATC 8 cut(s) 106, 226, 277, 655, 801, 888, 1017, 1754
DpnII GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
DrdI GACNNNNNNGTC 1 cut(s) 1138
DseDI GACNNNNNNGTC 1 cut(s) 1138
Eam1104I CTCTTC 6 cut(s) 19, 254, 314, 714, 818, 1257
EarI CTCTTC 6 cut(s) 19, 254, 314, 714, 818, 1257
Eco130I CCWWGG 1 cut(s) 374
Eco24I GRGCYC 2 cut(s) 223, 268
Eco47I GGWCC 1 cut(s) 956
Eco88I CYCGRG 1 cut(s) 1544
EcoNI CCTNNNNNAGG 1 cut(s) 1316
EcoRII CCWGG 4 cut(s) 398, 487, 1006, 1178
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 2 cut(s) 223, 268
ErhI CCWWGG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 2 cut(s) 689, 886
FaqI GGGAC 3 cut(s) 314, 550, 1782
FatI CATG 2 cut(s) 685, 882
FauI CCCGC 1 cut(s) 290
FauNDI CATATG 2 cut(s) 628, 730
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 8 cut(s) 167, 254, 709, 719, 809, 821, 1201, 1238
FriOI GRGCYC 2 cut(s) 223, 268
Fsp4HI GCNGC 1 cut(s) 295
FspAI RTGCGCAY 1 cut(s) 711
FspBI CTAG 6 cut(s) 234, 375, 549, 878, 1194, 1496
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 4 cut(s) 230, 232, 409, 711
GluI GCNGC 1 cut(s) 295
HaeIII GGCC 4 cut(s) 930, 1268, 1276, 1488
HapII CCGG 2 cut(s) 147, 1791
HgaI GACGC 1 cut(s) 399
HhaI GCGC 4 cut(s) 231, 233, 410, 712
Hin1II CATG 2 cut(s) 689, 886
Hin6I GCGC 4 cut(s) 229, 231, 408, 710
HinP1I GCGC 4 cut(s) 229, 231, 408, 710
HindIII AAGCTT 2 cut(s) 113, 858
HinfI GANTC 7 cut(s) 131, 158, 302, 464, 942, 1022, 1172
HpaII CCGG 2 cut(s) 147, 1791
HphI GGTGA 9 cut(s) 161, 464, 611, 1022, 1464, 1496, 1573, 1646, 1726
Hpy166II GTNNAC 1 cut(s) 1143
Hpy188I TCNGA 8 cut(s) 52, 196, 270, 435, 609, 1219, 1594, 1657
Hpy188III TCNNGA 7 cut(s) 125, 162, 946, 1019, 1106, 1280, 1544
Hpy8I GTNNAC 1 cut(s) 1143
Hpy99I CGWCG 2 cut(s) 126, 415
HpyAV CCTTC 5 cut(s) 210, 232, 538, 756, 1544
HpyCH4III ACNGT 4 cut(s) 667, 1609, 1634, 1692
HpyCH4V TGCA 5 cut(s) 245, 579, 815, 1148, 1247
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 4 cut(s) 193, 267, 468, 540
Hsp92II CATG 2 cut(s) 689, 886
HspAI GCGC 4 cut(s) 229, 231, 408, 710
Kzo9I GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
LmnI GCTCC 2 cut(s) 41, 252
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 5 cut(s) 232, 697, 1084, 1234, 1707
MaeI CTAG 6 cut(s) 234, 375, 549, 878, 1194, 1496
MaeIII GTNAC 6 cut(s) 125, 622, 661, 902, 1093, 1757
MalI GATC 8 cut(s) 106, 226, 277, 655, 801, 888, 1017, 1754
MboI GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
MflI RGATCY 4 cut(s) 104, 653, 886, 1015
MhlI GDGCHC 4 cut(s) 223, 268, 425, 1614
MluCI AATT 7 cut(s) 326, 637, 1026, 1083, 1157, 1349, 1763
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 587, 774
MroXI GAANNNNTTC 1 cut(s) 1161
MseI TTAA 4 cut(s) 519, 1031, 1335, 1434
MspA1I CMGCKG 2 cut(s) 297, 1091
MspI CCGG 2 cut(s) 147, 1791
MspR9I CCNGG 4 cut(s) 400, 489, 1008, 1180
MvaI CCWGG 4 cut(s) 400, 489, 1008, 1180
MvnI CGCG 3 cut(s) 229, 231, 410
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeI CATATG 2 cut(s) 628, 730
NdeII GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
NlaIII CATG 2 cut(s) 689, 886
NlaIV GGNNCC 3 cut(s) 1323, 1487, 1539
NmuCI GTSAC 3 cut(s) 125, 622, 1757
NsbI TGCGCA 1 cut(s) 711
PasI CCCWGGG 1 cut(s) 1179
PauI GCGCGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1161
PfeI GAWTC 6 cut(s) 131, 158, 464, 942, 1022, 1172
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 1 cut(s) 296
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 1335
Psp6I CCWGG 4 cut(s) 398, 487, 1006, 1178
PspGI CCWGG 4 cut(s) 398, 487, 1006, 1178
PspN4I GGNNCC 3 cut(s) 1323, 1487, 1539
PspPI GGNCC 4 cut(s) 928, 956, 1274, 1486
PsuI RGATCY 4 cut(s) 104, 653, 886, 1015
PteI GCGCGC 1 cut(s) 229
PvuI CGATCG 1 cut(s) 227
RsaI GTAC 3 cut(s) 25, 925, 1737
RsaNI GTAC 3 cut(s) 24, 924, 1736
SaqAI TTAA 4 cut(s) 519, 1031, 1335, 1434
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 8 cut(s) 104, 224, 275, 653, 799, 886, 1015, 1752
Sau96I GGNCC 4 cut(s) 928, 956, 1274, 1486
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 4 cut(s) 400, 489, 1008, 1180
SduI GDGCHC 4 cut(s) 223, 268, 425, 1614
SfaNI GCATC 5 cut(s) 232, 697, 1084, 1234, 1707
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 1278, 1480
SmoI CTYRAG 2 cut(s) 1278, 1480
Sse9I AATT 7 cut(s) 326, 637, 1026, 1083, 1157, 1349, 1763
SsiI CCGC 3 cut(s) 297, 450, 1091
SspMI CTAG 6 cut(s) 234, 375, 549, 878, 1194, 1496
StyD4I CCNGG 4 cut(s) 398, 487, 1006, 1178
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 4 cut(s) 667, 1609, 1634, 1692
TaqI TCGA 4 cut(s) 58, 223, 641, 1466
TaqII GACCGA 1 cut(s) 1133
TasI AATT 7 cut(s) 326, 637, 1026, 1083, 1157, 1349, 1763
TfiI GAWTC 6 cut(s) 131, 158, 464, 942, 1022, 1172
Tru1I TTAA 4 cut(s) 519, 1031, 1335, 1434
Tru9I TTAA 4 cut(s) 519, 1031, 1335, 1434
TscAI CASTG 3 cut(s) 1150, 1351, 1447
TseFI GTSAC 3 cut(s) 125, 622, 1757
TseI GCWGC 1 cut(s) 294
Tsp45I GTSAC 3 cut(s) 125, 622, 1757
TspDTI ATGAA 2 cut(s) 981, 1686
TspGWI ACGGA 3 cut(s) 719, 845, 1745
TspRI CASTG 3 cut(s) 1150, 1351, 1447
VpaK11BI GGWCC 1 cut(s) 956
VspI ATTAAT 1 cut(s) 1335
XagI CCTNNNNNAGG 1 cut(s) 1316
XapI RAATTY 3 cut(s) 1083, 1349, 1763
XmaJI CCTAGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 1161
XspI CTAG 6 cut(s) 234, 375, 549, 878, 1194, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.