Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000293.1

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Forward (+)

3576 .. 6108

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000293.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

atggccaagtcctcttcttcccatcgtaagaaacgcgacaagatttcctctaaggctcgaacgaagaagaggagtaagagcaagagcaggagtaagagtaagagtgagaaatatagatccaagaaggttcgtcgtcgcgatgattctctttctttttcggatgaggatgattccagaagcttgagttcagattcgttgtttagctctggggatgaccgtagaagtagaagggctcgttcacgcactcggagggatgtgaagggtagcaagaagagggctcggaagcgatcttatagcagcgatagtagtgaggagtctccccgtccgaagaagaggaaagcaacaaagaaggttaaggagtatgacgcgaagaagaggagccgttcgagggagaagcctaagagaaatgctaggactagttctgtgagtagtgagtcttggagctgctcgacttgtcagggtgggggtgttagtggtgacgagattgaatctaaaagacataggggaaggtctgaaaaacgaaagagagaggaaaccgatagaaacaaggttgagagtgggactgagaggagtagatatagatctaggagtcgttctttgcgcagtcattatagcgagagtgattgtcagagtcaggaaagagtgaccggtgagagcaatgggaggagattgagatcagttattgcggtggccgaagaaaacaatgaaggcagatggttagatgaggatgggcacaaagaagagattacatatgatcgtgatgattacccttcttgtagaagtaatgacagtaatgacggagggagcaagaaggagttggataatcatctacatgtttcatccgaggtgagaatgagggtagagagtgtgaaagatgaagaagctcttgtttctgatgcagaaggaattaattctagccgtgatggaaccatgatgaccgatcatgttaatgaaaataagatctctggggaaagtagtagtttgaaagacgatgatctggagacgatcttaagacagaaggctttagatgacggagggagcaagaaggagttggataatcatctacatgtttcatccgaggtgagaatgagggtagagagtgtgaaagaggaagaagctcttgtttctgatgcagaaggaattaattctggccgtgatggaaccatgatgactgatcatgttaatgaaaataagatctctggggaaagtagtagtttgaaagatgatgatctggagacgatcttaagacagaaggctttagaaaatctaaaaaggttcagaggaaagcctcaaaggattgcagtaactggtaatcaggaagataagaagcaaccatccggtgcaagggctgaattggtccaaatagactcccccaaggaggatatttctgaaataaatggtcaaacccgattagcagaagagaccaatgagcctccagtgaaagattccatttgtggaaatgaacctgtctctgccaagcaagatgttgcttgtccaacacatcaagagcgtgttgctggtatttccaaaatggttagcactactgctgtcgtagataaaccaaacttggctgcaccaaaatcaatgtctggttcactaaaaactcactcaactttgaagccagcacttgcttctctggaacccccccaggaaagattgttggtaactgagagtagtgtagataacacagcttctgctactgctcaaactgtgacccaaagtagcaaaaatgatgctctagacatcagcaacggttctggttctaccgctcctgaaccttctggagagaataggtctggtttacagcaagatgaggctaaggatggttcacagtttgagcagaagaccatgtctgtgatgcgaggtagtgaaatggtacaggtaagctacaaggtttacatcccaaagaaagcccctgctttggcgaggaggcacctcaagcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

648

Amino Acids

72.29

Weight (kDa)

9.43

Isoelectric Point (pI)

73.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	1932
AccBSI	CCGCTC	1 cut(s)	1769
AccII	CGCG	3 cut(s)	36, 138, 368
AciI	CCGC	2 cut(s)	686, 1767
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	3 cut(s)	3, 690, 1150
AfaI	GTAC	1 cut(s)	1878
AfiI	CCNNNNNNNGG	4 cut(s)	388, 1344, 1378, 1921
AflII	CTTAAG	2 cut(s)	1009, 1243
AflIII	ACRYGT	2 cut(s)	832, 1066
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	488, 985, 1219, 1618
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	1647
AluBI	AGCT	7 cut(s)	180, 204, 444, 884, 1118, 1691, 1887
AluI	AGCT	7 cut(s)	180, 204, 444, 884, 1118, 1691, 1887
Alw26I	GTCTC	5 cut(s)	321, 995, 1229, 1415, 1474
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	1307, 1694
AoxI	GGCC	3 cut(s)	3, 690, 1150
ApeKI	GCWGC	3 cut(s)	297, 444, 1571
ArsI	GACNNNNNNTTYG	2 cut(s)	1571, 1603
AseI	ATTAAT	2 cut(s)	909, 1143
AsiGI	ACCGGT	1 cut(s)	647
Asp700I	GAANNNNTTC	2 cut(s)	910, 1144
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	1357
AsuHPI	GGTGA	4 cut(s)	488, 662, 859, 1093
AvaII	GGWCC	1 cut(s)	1357
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1932
BanII	GRGCYC	2 cut(s)	235, 280
BbsI	GAAGAC	1 cut(s)	1850
BbvI	GCAGC	3 cut(s)	309, 431, 1558
BccI	CCATC	7 cut(s)	30, 708, 722, 917, 1151, 1342, 1817
BceAI	ACGGC	3 cut(s)	366, 903, 1137
BciT130I	CCWGG	1 cut(s)	1649
BclI	TGATCA	1 cut(s)	1174
BcoDI	GTCTC	5 cut(s)	321, 995, 1229, 1415, 1474
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	5 cut(s)	411, 417, 585, 915, 1739
BfrI	CTTAAG	2 cut(s)	1009, 1243
BglII	AGATCT	3 cut(s)	581, 960, 1194
BisI	GCNGC	3 cut(s)	298, 445, 1572
BlsI	GCNGC	3 cut(s)	299, 446, 1573
Bme1390I	CCNGG	1 cut(s)	1649
Bme18I	GGWCC	1 cut(s)	1357
BmgT120I	GGNCC	1 cut(s)	1357
BmiI	GGNNCC	5 cut(s)	380, 928, 1162, 1641, 1934
BmrFI	CCNGG	1 cut(s)	1649
BmsI	GCATC	4 cut(s)	886, 1120, 1723, 1848
BpiI	GAAGAC	1 cut(s)	1850
BpmI	CTGGAG	4 cut(s)	1019, 1253, 1419, 1803
Bpu10I	CCTNAGC	1 cut(s)	1818
BpuEI	CTTGAG	2 cut(s)	202, 1922
BsaBI	GATNNNNATC	5 cut(s)	580, 673, 825, 1059, 1227
BsaI	GGTCTC	1 cut(s)	1415
BsaJI	CCNNGG	4 cut(s)	843, 1077, 1374, 1647
BsaWI	WCCGGW	2 cut(s)	647, 1337
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 1344, 1378, 1921
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	1312, 1436
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	5 cut(s)	580, 673, 825, 1059, 1227
BseBI	CCWGG	1 cut(s)	1649
BseDI	CCNNGG	4 cut(s)	843, 1077, 1374, 1647
BseJI	GATNNNNATC	5 cut(s)	580, 673, 825, 1059, 1227
BseLI	CCNNNNNNNGG	4 cut(s)	388, 1344, 1378, 1921
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	555, 1659
BseNI	ACTGG	2 cut(s)	1312, 1436
BseRI	GAGGAG	6 cut(s)	85, 326, 391, 583, 679, 1942
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	309, 431, 1558
BsgI	GTGCAG	1 cut(s)	1557
Bsh1236I	CGCG	3 cut(s)	36, 138, 368
BshFI	GGCC	3 cut(s)	5, 692, 1152
BshNI	GGYRCC	1 cut(s)	1932
BshTI	ACCGGT	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	648, 1338
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	4 cut(s)	388, 1344, 1378, 1921
BsmAI	GTCTC	5 cut(s)	321, 995, 1229, 1415, 1474
BsmBI	CGTCTC	2 cut(s)	995, 1229
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	5, 692, 1152
Bso31I	GGTCTC	1 cut(s)	1415
Bsp1286I	GDGCHC	3 cut(s)	235, 280, 735
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	2 cut(s)	686, 1767
BspANI	GGCC	3 cut(s)	5, 692, 1152
BspCNI	CTCAG	2 cut(s)	556, 1660
BspFNI	CGCG	3 cut(s)	36, 138, 368
BspLI	GGNNCC	5 cut(s)	380, 928, 1162, 1641, 1934
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	1932
BspTI	CTTAAG	2 cut(s)	1009, 1243
BspTNI	GGTCTC	1 cut(s)	1415
BsrBI	CCGCTC	1 cut(s)	1769
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	1312, 1436
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	843, 1077, 1374, 1647
BssT1I	CCWWGG	1 cut(s)	1374
Bst2UI	CCWGG	1 cut(s)	1649
Bst4CI	ACNGT	5 cut(s)	218, 791, 1711, 1754, 1833
Bst6I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1413
BstAFI	CTTAAG	2 cut(s)	1009, 1243
BstC8I	GCNNGC	1 cut(s)	1623
BstDEI	CTNAG	5 cut(s)	51, 399, 564, 1668, 1818
BstFNI	CGCG	3 cut(s)	36, 138, 368
BstHHI	GCGC	1 cut(s)	603
BstMAI	GTCTC	5 cut(s)	321, 995, 1229, 1415, 1474
BstMWI	GCNNNNNNNGC	1 cut(s)	1939
BstNI	CCWGG	1 cut(s)	1649
BstNSI	RCATGY	2 cut(s)	836, 1070
BstSCI	CCNGG	1 cut(s)	1647
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	3 cut(s)	36, 138, 368
BstV1I	GCAGC	3 cut(s)	309, 431, 1558
BstV2I	GAAGAC	1 cut(s)	1850
BstX2I	RGATCY	4 cut(s)	116, 581, 960, 1194
BstYI	RGATCY	4 cut(s)	116, 581, 960, 1194
BsuRI	GGCC	3 cut(s)	5, 692, 1152
BtgZI	GCGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	1443
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	1623
CaiI	CAGNNNCTG	2 cut(s)	1307, 1694
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	1357
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	1877
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	7 cut(s)	833, 931, 944, 1067, 1165, 1178, 1849
CviQI	GTAC	1 cut(s)	1877
DdeI	CTNAG	5 cut(s)	51, 399, 564, 1668, 1818
EaeI	YGGCCR	3 cut(s)	3, 690, 1150
Eam1104I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1413
EarI	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1413
Eco130I	CCWWGG	1 cut(s)	1374
Eco24I	GRGCYC	2 cut(s)	235, 280
Eco31I	GGTCTC	1 cut(s)	1415
Eco47I	GGWCC	1 cut(s)	1357
EcoRII	CCWGG	1 cut(s)	1647
EcoT14I	CCWWGG	1 cut(s)	1374
EcoT38I	GRGCYC	2 cut(s)	235, 280
ErhI	CCWWGG	1 cut(s)	1374
Esp3I	CGTCTC	2 cut(s)	995, 1229
FaeI	CATG	7 cut(s)	836, 934, 947, 1070, 1168, 1181, 1852
FalI	AAGNNNNNCTT	4 cut(s)	870, 902, 1104, 1136
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	7 cut(s)	832, 930, 943, 1066, 1164, 1177, 1848
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	1174
Fnu4HI	GCNGC	3 cut(s)	298, 445, 1572
FriOI	GRGCYC	2 cut(s)	235, 280
Fsp4HI	GCNGC	3 cut(s)	298, 445, 1572
FspBI	CTAG	5 cut(s)	411, 417, 585, 915, 1739
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	298, 445, 1572
GsuI	CTGGAG	4 cut(s)	1019, 1253, 1419, 1803
HaeIII	GGCC	3 cut(s)	5, 692, 1152
HapII	CCGG	2 cut(s)	648, 1338
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	7 cut(s)	836, 934, 947, 1070, 1168, 1181, 1852
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	2 cut(s)	648, 1338
HphI	GGTGA	4 cut(s)	488, 662, 859, 1093
Hpy166II	GTNNAC	5 cut(s)	239, 1595, 1802, 1829, 1897
Hpy8I	GTNNAC	5 cut(s)	239, 1595, 1802, 1829, 1897
Hpy99I	CGWCG	2 cut(s)	135, 138
HpyCH4III	ACNGT	5 cut(s)	218, 791, 1711, 1754, 1833
HpyCH4V	TGCA	5 cut(s)	899, 1133, 1301, 1343, 1574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1939
HpyF3I	CTNAG	5 cut(s)	51, 399, 564, 1668, 1818
Hsp92II	CATG	7 cut(s)	836, 934, 947, 1070, 1168, 1181, 1852
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	1174
LmnI	GCTCC	5 cut(s)	378, 441, 804, 1038, 1774
Lsp1109I	GCAGC	3 cut(s)	309, 431, 1558
LweI	GCATC	4 cut(s)	886, 1120, 1723, 1848
MaeI	CTAG	5 cut(s)	411, 417, 585, 915, 1739
MaeIII	GTNAC	5 cut(s)	476, 643, 1303, 1663, 1711
MbiI	CCGCTC	1 cut(s)	1769
MflI	RGATCY	4 cut(s)	116, 581, 960, 1194
MhlI	GDGCHC	3 cut(s)	235, 280, 735
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	906, 910, 1140, 1144, 1352
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	323, 443, 598, 640, 1361
MmeI	TCCRAC	3 cut(s)	798, 1032, 1520
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	910, 1144
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	354, 909, 948, 1010, 1143, 1182, 1244
MslI	CAYNNNNRTG	5 cut(s)	831, 948, 1065, 1182, 1853
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	1009, 1243
MspI	CCGG	2 cut(s)	648, 1338
MspR9I	CCNGG	1 cut(s)	1649
MvaI	CCWGG	1 cut(s)	1649
MvnI	CGCG	3 cut(s)	36, 138, 368
MwoI	GCNNNNNNNGC	1 cut(s)	1939
NdeI	CATATG	1 cut(s)	751
NlaIII	CATG	7 cut(s)	836, 934, 947, 1070, 1168, 1181, 1852
NlaIV	GGNNCC	5 cut(s)	380, 928, 1162, 1641, 1934
NmuCI	GTSAC	3 cut(s)	476, 643, 1711
NruI	TCGCGA	1 cut(s)	138
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	2 cut(s)	836, 1070
PciI	ACATGT	2 cut(s)	832, 1066
PdmI	GAANNNNTTC	2 cut(s)	910, 1144
PfeI	GAWTC	5 cut(s)	143, 170, 191, 488, 1445
PflFI	GACNNNGTC	1 cut(s)	1849
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	299, 446, 1573
PleI	GAGTC	5 cut(s)	322, 442, 597, 639, 1361
PpsI	GAGTC	5 cut(s)	322, 442, 597, 639, 1361
PscI	ACATGT	2 cut(s)	832, 1066
PshBI	ATTAAT	2 cut(s)	909, 1143
Psp6I	CCWGG	1 cut(s)	1647
PspGI	CCWGG	1 cut(s)	1647
PspN4I	GGNNCC	5 cut(s)	380, 928, 1162, 1641, 1934
PspPI	GGNCC	1 cut(s)	1357
PstNI	CAGNNNCTG	2 cut(s)	1307, 1694
PsuI	RGATCY	4 cut(s)	116, 581, 960, 1194
PsyI	GACNNNGTC	1 cut(s)	1849
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	1 cut(s)	1878
RsaNI	GTAC	1 cut(s)	1877
RseI	CAYNNNNRTG	5 cut(s)	831, 948, 1065, 1182, 1853
SaqAI	TTAA	7 cut(s)	354, 909, 948, 1010, 1143, 1182, 1244
SatI	GCNGC	3 cut(s)	298, 445, 1572
Sau96I	GGNCC	1 cut(s)	1357
SchI	GAGTC	5 cut(s)	323, 443, 598, 640, 1361
ScrFI	CCNGG	1 cut(s)	1649
SduI	GDGCHC	3 cut(s)	235, 280, 735
SfaNI	GCATC	4 cut(s)	886, 1120, 1723, 1848
SinI	GGWCC	1 cut(s)	1357
SmiMI	CAYNNNNRTG	5 cut(s)	831, 948, 1065, 1182, 1853
SmlI	CTYRAG	4 cut(s)	181, 1009, 1243, 1937
SmoI	CTYRAG	4 cut(s)	181, 1009, 1243, 1937
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	5 cut(s)	906, 910, 1140, 1144, 1352
SsiI	CCGC	2 cut(s)	686, 1767
SspMI	CTAG	5 cut(s)	411, 417, 585, 915, 1739
StyD4I	CCNGG	1 cut(s)	1647
StyI	CCWWGG	1 cut(s)	1374
TaaI	ACNGT	5 cut(s)	218, 791, 1711, 1754, 1833
TaqI	TCGA	3 cut(s)	58, 386, 449
TaqII	GACCGA	1 cut(s)	953
TasI	AATT	5 cut(s)	906, 910, 1140, 1144, 1352
TfiI	GAWTC	5 cut(s)	143, 170, 191, 488, 1445
Tru1I	TTAA	7 cut(s)	354, 909, 948, 1010, 1143, 1182, 1244
Tru9I	TTAA	7 cut(s)	354, 909, 948, 1010, 1143, 1182, 1244
TscAI	CASTG	1 cut(s)	1443
TseFI	GTSAC	3 cut(s)	476, 643, 1711
TseI	GCWGC	3 cut(s)	297, 444, 1571
Tsp45I	GTSAC	3 cut(s)	476, 643, 1711
TspDTI	ATGAA	7 cut(s)	720, 828, 891, 966, 1062, 1200, 1476
TspGWI	ACGGA	2 cut(s)	813, 1047
TspRI	CASTG	1 cut(s)	1443
Tth111I	GACNNNGTC	1 cut(s)	1849
Vha464I	CTTAAG	2 cut(s)	1009, 1243
VpaK11BI	GGWCC	1 cut(s)	1357
VspI	ATTAAT	2 cut(s)	909, 1143
XbaI	TCTAGA	1 cut(s)	1738
XceI	RCATGY	2 cut(s)	836, 1070
XmnI	GAANNNNTTC	2 cut(s)	910, 1144
XspI	CTAG	5 cut(s)	411, 417, 585, 915, 1739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.