Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Reverse (-)

18979751 .. 18981317

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGCTAGTGTTAGTTCCAGGAGTAGTGCGTCGTTTAGCTGCTCAACTTGTCCTAGTGGGGGAATTAGTGGCGATGACATTGAATCTAAGAGGCATAGGGGCAGACCGGAAAAACGAAACAGAGATGAAAGTGATATTAACATGGTTGGTAGGGGGACTAAGAGGGCTAGATATAGGTCATGGAGCTGTTCTTCGCGCAGTCAGGGTAGCGAGAGTGGTGATCGATCGGAGTGAGGAAAAAGTGACATATGAGAACAATACGAGGAGGTTGAGATCCGTAGTTACTGTAACAGAAGAAGACAAGCACGGCAGATGGATGGATACGGATGCGCACAAAGAAGAGATTACATACGATGACGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGATGCAAGAGGGAGTTGAATAATTGTTTAGATGTTGCATTTAAGAAGAGAACGGAAGTAGAGAGTGGGAAAGAGGAAGAAGCTTATGTTTCTAATGTTCCAATCATGGATCTCAAAGATATTCGTAGCATTTTGGAAAAAGATTGCGTGGGCCAAGGCGATGGAATTGGGATTACTGGTCCTGTTAATGAAAATAAGAATGAGGTTTCTGGGACAATCAGTTGTCTGCCAGGTGAGGATCTGGAATCAATTTTAAGACAAAAGGCTTTGGAAAATCTAAAAAGATTTAAAGGAAAGCATCAAAGAATTTCAGCTGTAACTACCAATCAGGAAGACAAGACCGCTATTGATTTGAAACAGCCGTCCACTGCAAAGGTTGAATTGGTTCAAATAGAATCCCCCGGGGAGAGTGGTGCTAGAGTGGTTGTAGCAAACTCATCCGAGGAGGATGTTGCTGAAAGGGTTGATGCAAACCAATCAGTAGAAGAGGCCAATGGGCCTCAAGAGAGAGTTTCCATGCTTTCTTCCCAAAACCTTGAAAAGGAACCAGATGGCAATGAAATCTCTGCCGAGCAAGATGTTGCTTGTCCAATAGAGCAAGTGGTTGTCGGTATAAAGGTTAAGACCACTGCTGCCCTTAATAAACCAAACACGACTTCACCAAGATTGAGGGGTCATAAGCTAAAAGTTCACCCCACGCTGAAACAAGAACTTGCTTTACAGGAACCTCCTGAGGAAAGATTGTTGGTGAGTGAGAGTTGTGTAGATAAGGGTGCTTCTGGGACTGCCCAAACTGTTCCTCAAAGAAGCAATAGAAACGGTGAAGATACTGATGAGGCTCATGATTCTACTGCTCCCAAACCTTCAGGAGAAAATAGTTCTGATAAACAGCAAGATGAAGCTACAGTTGGCTCACAGTTTGAGCAGAAAACAATGTCGGTGATGCGAGGTAGTGAAATGGTACAGGTGAGTTATAAGGTTTACATCCCTAAGAAAGCTCCTGCTCTGGCGAGGAGGCAACTCAAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

476

Amino Acids

52.19

Weight (kDa)

5.44

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1371
Acc16I	TGCGCA	1 cut(s)	330
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	738, 1423
AclWI	GGATC	3 cut(s)	267, 513, 642
AcsI	RAATTY	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	1245
AfaI	GTAC	1 cut(s)	1359
AfiI	CCNNNNNNNGG	2 cut(s)	58, 937
AgsI	TTSAA	6 cut(s)	82, 415, 751, 776, 785, 935
AjnI	CCWGG	2 cut(s)	16, 625
AjuI	GAANNNNNNNTTGG	4 cut(s)	1036, 1068, 1287, 1319
AluBI	AGCT	7 cut(s)	38, 185, 479, 710, 1078, 1298, 1394
AluI	AGCT	7 cut(s)	38, 185, 479, 710, 1078, 1298, 1394
AlwI	GGATC	3 cut(s)	267, 513, 642
Ama87I	CYCGRG	1 cut(s)	797
AoxI	GGCC	3 cut(s)	547, 885, 893
ApeKI	GCWGC	2 cut(s)	38, 1028
ApoI	RAATTY	1 cut(s)	702
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	2 cut(s)	197, 331
AspS9I	GGNCC	3 cut(s)	547, 575, 893
AsuC2I	CCSGG	2 cut(s)	798, 799
AsuHPI	GGTGA	8 cut(s)	229, 641, 1047, 1079, 1156, 1229, 1348, 1375
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	1128
BbsI	GAAGAC	2 cut(s)	303, 735
BbvI	GCAGC	2 cut(s)	25, 1015
BccI	CCATC	4 cut(s)	306, 310, 551, 941
BceAI	ACGGC	2 cut(s)	322, 742
BciT130I	CCWGG	2 cut(s)	18, 627
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	798, 799
BfaI	CTAG	4 cut(s)	5, 53, 167, 813
BfmI	CTRYAG	1 cut(s)	1299
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	39, 1029
BlsI	GCNGC	2 cut(s)	40, 1030
Bme1390I	CCNGG	4 cut(s)	18, 627, 798, 799
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	797
BmgT120I	GGNCC	3 cut(s)	547, 575, 893
BmiI	GGNNCC	2 cut(s)	942, 1122
BmrFI	CCNGG	4 cut(s)	18, 627, 798, 799
BmsI	GCATC	5 cut(s)	316, 389, 703, 853, 1329
BpiI	GAAGAC	2 cut(s)	303, 735
BpuEI	CTTGAG	2 cut(s)	882, 1403
BpuMI	CCSGG	2 cut(s)	798, 799
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	550, 796, 797, 798, 837
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 937
Bse1I	ACTGG	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	1128
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	18, 627
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	5 cut(s)	550, 796, 797, 798, 837
BseGI	GGATG	6 cut(s)	321, 331, 404, 833, 850, 1380
BseLI	CCNNNNNNNGG	2 cut(s)	58, 937
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	1 cut(s)	1119
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	3 cut(s)	277, 854, 1423
BseXI	GCAGC	2 cut(s)	25, 1015
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	549, 887, 895
BshVI	ATCGAT	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	2 cut(s)	106, 798
BslFI	GGGAC	3 cut(s)	168, 622, 1192
BslI	CCNNNNNNNGG	2 cut(s)	58, 937
BsmFI	GGGAC	3 cut(s)	168, 622, 1192
BsnI	GGCC	3 cut(s)	549, 887, 895
BsoBI	CYCGRG	1 cut(s)	797
Bsp143I	GATC	5 cut(s)	219, 223, 272, 505, 634
BspACI	CCGC	2 cut(s)	738, 1423
BspANI	GGCC	3 cut(s)	549, 887, 895
BspCNI	CTCAG	1 cut(s)	1120
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	2 cut(s)	942, 1122
BspPI	GGATC	3 cut(s)	267, 513, 642
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	5 cut(s)	550, 796, 797, 798, 837
BssMI	GATC	5 cut(s)	219, 223, 272, 505, 634
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	18, 627
Bst4CI	ACNGT	6 cut(s)	286, 386, 1192, 1217, 1303, 1314
Bst6I	CTCTTC	3 cut(s)	333, 437, 876
BstDEI	CTNAG	4 cut(s)	86, 158, 1128, 1386
BstENI	CCTNNNNNAGG	1 cut(s)	935
BstF5I	GGATG	6 cut(s)	321, 331, 404, 833, 850, 1380
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	197, 331
BstKTI	GATC	5 cut(s)	222, 226, 275, 508, 637
BstMBI	GATC	5 cut(s)	219, 223, 272, 505, 634
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	1420
BstNI	CCWGG	2 cut(s)	18, 627
BstSCI	CCNGG	4 cut(s)	16, 625, 796, 797
BstSFI	CTRYAG	1 cut(s)	1299
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	25, 1015
BstV2I	GAAGAC	2 cut(s)	303, 735
BstX2I	RGATCY	3 cut(s)	272, 505, 634
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	3 cut(s)	272, 505, 634
Bsu15I	ATCGAT	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	1128
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	549, 887, 895
BsuTUI	ATCGAT	1 cut(s)	222
BtgZI	GCGATG	2 cut(s)	86, 570
BtsCI	GGATG	6 cut(s)	321, 331, 404, 833, 850, 1380
BtsI	GCAGTG	2 cut(s)	762, 1023
BtsIMutI	CAGTG	2 cut(s)	762, 1023
CciI	TCATGA	1 cut(s)	1237
CfoI	GCGC	2 cut(s)	197, 331
Cfr13I	GGNCC	3 cut(s)	547, 575, 893
Cfr9I	CCCGGG	1 cut(s)	797
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	1358
CviAII	CATG	5 cut(s)	141, 179, 502, 913, 1238
CviQI	GTAC	1 cut(s)	1358
DdeI	CTNAG	4 cut(s)	86, 158, 1128, 1386
DpnI	GATC	5 cut(s)	221, 225, 274, 507, 636
DpnII	GATC	5 cut(s)	219, 223, 272, 505, 634
DraI	TTTAAA	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	333, 437, 876
EarI	CTCTTC	3 cut(s)	333, 437, 876
Eco130I	CCWWGG	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	1245
Eco81I	CCTNAGG	1 cut(s)	1128
Eco88I	CYCGRG	1 cut(s)	797
EcoNI	CCTNNNNNAGG	1 cut(s)	935
EcoRII	CCWGG	2 cut(s)	16, 625
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	5 cut(s)	144, 182, 505, 916, 1241
FaqI	GGGAC	3 cut(s)	168, 622, 1192
FatI	CATG	5 cut(s)	140, 178, 501, 912, 1237
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	39, 1029
FokI	GGATG	6 cut(s)	328, 338, 411, 820, 857, 1367
Fsp4HI	GCNGC	2 cut(s)	39, 1029
FspAI	RTGCGCAY	1 cut(s)	330
FspBI	CTAG	4 cut(s)	5, 53, 167, 813
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	196, 330
GluI	GCNGC	2 cut(s)	39, 1029
HaeIII	GGCC	3 cut(s)	549, 887, 895
HapII	CCGG	2 cut(s)	106, 798
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	197, 331
Hin1II	CATG	5 cut(s)	144, 182, 505, 916, 1241
Hin6I	GCGC	2 cut(s)	195, 329
HinP1I	GCGC	2 cut(s)	195, 329
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	82, 641, 791, 1241
HpaII	CCGG	2 cut(s)	106, 798
HphI	GGTGA	8 cut(s)	229, 641, 1047, 1079, 1156, 1229, 1348, 1375
Hpy166II	GTNNAC	3 cut(s)	762, 1087, 1378
Hpy188I	TCNGA	3 cut(s)	228, 838, 1279
Hpy188III	TCNNGA	6 cut(s)	638, 725, 899, 1127, 1238, 1263
Hpy8I	GTNNAC	3 cut(s)	762, 1087, 1378
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	375, 1269
HpyCH4III	ACNGT	6 cut(s)	286, 386, 1192, 1217, 1303, 1314
HpyCH4V	TGCA	4 cut(s)	402, 434, 767, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1420
HpyF3I	CTNAG	4 cut(s)	86, 158, 1128, 1386
Hsp92II	CATG	5 cut(s)	144, 182, 505, 916, 1241
HspAI	GCGC	2 cut(s)	195, 329
Kzo9I	GATC	5 cut(s)	219, 223, 272, 505, 634
LmnI	GCTCC	3 cut(s)	182, 1255, 1399
Lsp1109I	GCAGC	2 cut(s)	25, 1015
LweI	GCATC	5 cut(s)	316, 389, 703, 853, 1329
MaeI	CTAG	4 cut(s)	5, 53, 167, 813
MaeIII	GTNAC	4 cut(s)	241, 280, 286, 712
MalI	GATC	5 cut(s)	221, 225, 274, 507, 636
MboI	GATC	5 cut(s)	219, 223, 272, 505, 634
MflI	RGATCY	3 cut(s)	272, 505, 634
MluCI	AATT	6 cut(s)	62, 418, 561, 645, 702, 776
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	7 cut(s)	137, 438, 582, 650, 684, 1017, 1035
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	2 cut(s)	106, 798
MspR9I	CCNGG	4 cut(s)	18, 627, 798, 799
MvaI	CCWGG	2 cut(s)	18, 627
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	1420
NciI	CCSGG	2 cut(s)	798, 799
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	5 cut(s)	219, 223, 272, 505, 634
NlaIII	CATG	5 cut(s)	144, 182, 505, 916, 1241
NlaIV	GGNNCC	2 cut(s)	942, 1122
NmeAIII	GCCGAG	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	330
PagI	TCATGA	1 cut(s)	1237
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	82, 641, 791, 1241
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	40, 1030
Ple19I	CGATCG	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	1371
Psp6I	CCWGG	2 cut(s)	16, 625
PspGI	CCWGG	2 cut(s)	16, 625
PspN4I	GGNNCC	2 cut(s)	942, 1122
PspPI	GGNCC	3 cut(s)	547, 575, 893
PsrI	GAACNNNNNNTAC	2 cut(s)	1098, 1130
PsuI	RGATCY	3 cut(s)	272, 505, 634
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	1 cut(s)	1359
RsaNI	GTAC	1 cut(s)	1358
SaqAI	TTAA	7 cut(s)	137, 438, 582, 650, 684, 1017, 1035
SatI	GCNGC	2 cut(s)	39, 1029
Sau3AI	GATC	5 cut(s)	219, 223, 272, 505, 634
Sau96I	GGNCC	3 cut(s)	547, 575, 893
ScrFI	CCNGG	4 cut(s)	18, 627, 798, 799
SfaNI	GCATC	5 cut(s)	316, 389, 703, 853, 1329
SfcI	CTRYAG	1 cut(s)	1299
SinI	GGWCC	1 cut(s)	575
SmaI	CCCGGG	1 cut(s)	799
SmlI	CTYRAG	2 cut(s)	897, 1418
SmoI	CTYRAG	2 cut(s)	897, 1418
Sse9I	AATT	6 cut(s)	62, 418, 561, 645, 702, 776
SsiI	CCGC	2 cut(s)	738, 1423
SspMI	CTAG	4 cut(s)	5, 53, 167, 813
StyD4I	CCNGG	4 cut(s)	16, 625, 796, 797
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	6 cut(s)	286, 386, 1192, 1217, 1303, 1314
TaqI	TCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	62, 418, 561, 645, 702, 776
TfiI	GAWTC	4 cut(s)	82, 641, 791, 1241
Tru1I	TTAA	7 cut(s)	137, 438, 582, 650, 684, 1017, 1035
Tru9I	TTAA	7 cut(s)	137, 438, 582, 650, 684, 1017, 1035
TscAI	CASTG	2 cut(s)	769, 1030
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	38, 1028
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	140, 600, 969, 1308
TspGWI	ACGGA	4 cut(s)	265, 338, 408, 464
TspMI	CCCGGG	1 cut(s)	797
TspRI	CASTG	2 cut(s)	769, 1030
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	935
XapI	RAATTY	1 cut(s)	702
XmaI	CCCGGG	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	4 cut(s)	5, 53, 167, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.