MD03G1231500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
31704749 .. 31707471
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1231500.v1.1.491

Sequence Viewer

Length: 1803 bp
ATGGGCAAGTCCTCTTCTTCTCATACCAAGAAACGCTCCAAGGCTCGAACAAGGAAGAAGAGTAGGAGTAAGAGTAAAAGTAGGAAATATAGATACAAGAAGCTTCGCCGTCGTGACGATTCTTCTTCGTATTCTGGTGAGGATGATTCAAGAAGTTTGGAATCGTTTTCGTCTTTTGGTTCAGAGGATGATTCGAGAAGTAGAAGGGCTCGATCGCGCACTCGGAAGGTTGCAAAAGGGAGCAAGAAGAGGGCTCGGAGACGCTCTTATAGCCGTGACAGCAGCAAGGACTCTGACCGTGGAAAGAAGAGGAAATCGGCAAAGAAGAAGAATGATAAGAAAACTCATTTGAGGAAGAAGAAGCCTAGGAGGAATGCTAGTGTTAGTTCCAGGAGTAGTGCGTCGTTTAGCTGCTCAACTTGTCCTAGTGGGGGAATTAGTGGCGATGACATTGAATCTAAGAGGCATAGGGACAGACCGGAAAAACGATACAGAGATGGAAGTGATATTAACATGGTTGATAGTGAGACTAAGAGGGCTAGATATAGGTCATGGAGCTGTTCTTCACAAAGTCAGTGTAGCGAGAGTGGTGATTGTCAGAGTGAGGAAAAAGTGACAAACGAGAACAATACAAGGAGGTTGAGATCTGTAGTTACAGTAACGGAAGAAGACAAGCATGGCAGATGGATGGATACAGATGGGCACAAAGAAGAGATTACATACGATGACGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGATGCAGGAGGGAGTTGAATAATCGTTTAGATGTTGCATTTGAAAAGAGAACGGAAGTAGAGAGTGGGAAAGAGGAAGTAGCTTATGTTTCTAATGTTCCAATCATGGATCTCAAAGATATTCGTAACATTTTGGAGAAAGATTGCGCGGGCCAAGGTGATGGAATTGGGACTACTGGTCCTATTAATGAAAATAAGAATGAGGTTTCTGGGACAATCAGTAGTCTGCCAGGTGAGGATCTGGAATCAATTTTAAGACAAAAGGCTTTGGAAAATCTAAAAAGATTCAAAGGAAAGCATCAAAGAATTTCAGTGGTAACTACCCATCGGGAAGACAAGACCGCTATTGATTTGAAACAGCAGTCCACTGCAAAGGTTGAATTGGTTCAAACAGAATCCCCCGGGACGAGTGGTGCTAGAGTGGTTGTAGCAAAGTCATCCGAGGAGGATGTTGCTGAAAGGGTTGATGCAATCCAATCAGTAGAAGAGGCCAATGGGCCTCAAGAGAGAGTTTCCATGCTTTCTTCCCAAAACCTTGAAAAGGAACCAGATGGCAATGAATTTATCTCTGCCAAGCAAGATGTTGCTTGTCCAATAGACCAAGTGGTTGTCGGTATAAAGGTTAAGACCACTGCTGCCCTTAATAAACCAAACGCGACTTCACCAACATTGAGGAGTCATTCGCTAAAAGCTCACCCCACGCTGAAACAAGAACCTGCTTTACAGGAACCTTCTGAGGAAAGATTGTTGGTGAGTGAGAGTTGTGTAGATAAGGGTGCTTCTGGGACTGCCCAAACTGTTCCTCGAAGAAGCAATAGCAAAGGTGAAGATACCGATGATGGTCATGGTTCTACTGCTCCTGAACCTTCAGGAGAAAATAGTTCTGATAAACAGCAAGATGAAGCTACAGTTGGCTCACAGTTTGAGCAGAAAACAATGTCGGTGATGCGAGGTAGTGAAATGGTACAGGTGAGTTATAAGGTTTACATCCCTAAGAAAGCTCCTGCTCTGGCGAGGAGGCAACTCAAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

601

Amino Acids

66.9

Weight (kDa)

9.55

Isoelectric Point (pI)

71.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1746
Acc36I ACCTGC 1 cut(s) 1492
AccII CGCG 3 cut(s) 217, 917, 1424
AciI CCGC 3 cut(s) 917, 1110, 1798
AclWI GGATC 2 cut(s) 885, 1014
AcsI RAATTY 2 cut(s) 1074, 1328
AcuI CTGAAG 1 cut(s) 1620
AfaI GTAC 1 cut(s) 1734
AfiI CCNNNNNNNGG 2 cut(s) 431, 1309
AgsI TTSAA 9 cut(s) 150, 455, 787, 812, 1057, 1123, 1148, 1157, 1307
AhdI GACNNNNNGTC 1 cut(s) 945
AjnI CCWGG 2 cut(s) 389, 997
AjuI GAANNNNNNNTTGG 4 cut(s) 1411, 1443, 1662, 1694
AluBI AGCT 7 cut(s) 103, 411, 558, 851, 1460, 1673, 1769
AluI AGCT 7 cut(s) 103, 411, 558, 851, 1460, 1673, 1769
Alw26I GTCTC 2 cut(s) 253, 521
AlwI GGATC 2 cut(s) 885, 1014
Ama87I CYCGRG 1 cut(s) 1169
AoxI GGCC 3 cut(s) 919, 1257, 1265
ApeKI GCWGC 3 cut(s) 282, 411, 1403
ApoI RAATTY 2 cut(s) 1074, 1328
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 1152
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 2 cut(s) 219, 917
AspS9I GGNCC 3 cut(s) 919, 947, 1265
AsuC2I CCSGG 2 cut(s) 1170, 1171
AvaI CYCGRG 1 cut(s) 1169
AvaII GGWCC 1 cut(s) 947
AvrII CCTAGG 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 705
BanII GRGCYC 2 cut(s) 211, 256
BbsI GAAGAC 2 cut(s) 675, 1107
BbvI GCAGC 3 cut(s) 294, 398, 1390
BccI CCATC 8 cut(s) 491, 678, 682, 692, 923, 1101, 1313, 1601
BceAI ACGGC 2 cut(s) 93, 258
BciT130I CCWGG 2 cut(s) 391, 999
BciVI GTATCC 1 cut(s) 685
BcnI CCSGG 2 cut(s) 1170, 1171
BcoDI GTCTC 2 cut(s) 253, 521
BfaI CTAG 5 cut(s) 366, 378, 426, 540, 1185
BfmI CTRYAG 2 cut(s) 648, 1674
BfuAI ACCTGC 1 cut(s) 1492
BfuI GTATCC 1 cut(s) 685
BglII AGATCT 1 cut(s) 644
BisI GCNGC 3 cut(s) 283, 412, 1404
BlnI CCTAGG 1 cut(s) 365
BlsI GCNGC 3 cut(s) 284, 413, 1405
Bme1390I CCNGG 4 cut(s) 391, 999, 1170, 1171
Bme18I GGWCC 1 cut(s) 947
BmeRI GACNNNNNGTC 1 cut(s) 945
BmeT110I CYCGRG 1 cut(s) 1169
BmgT120I GGNCC 3 cut(s) 919, 947, 1265
BmiI GGNNCC 2 cut(s) 1314, 1497
BmrFI CCNGG 4 cut(s) 391, 999, 1170, 1171
BmsI GCATC 4 cut(s) 761, 1075, 1225, 1704
BpiI GAAGAC 2 cut(s) 675, 1107
BpuEI CTTGAG 2 cut(s) 1254, 1778
BpuMI CCSGG 2 cut(s) 1170, 1171
BsaJI CCNNGG 7 cut(s) 39, 298, 365, 922, 1168, 1169, 1209
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 1309
Bse1I ACTGG 1 cut(s) 949
Bse3DI GCAATG 1 cut(s) 1330
BseBI CCWGG 2 cut(s) 391, 999
BseDI CCNNGG 7 cut(s) 39, 298, 365, 922, 1168, 1169, 1209
BseGI GGATG 7 cut(s) 148, 193, 693, 776, 1205, 1222, 1755
BseLI CCNNNNNNNGG 2 cut(s) 431, 1309
BseMI GCAATG 1 cut(s) 1330
BseMII CTCAG 1 cut(s) 1494
BseNI ACTGG 1 cut(s) 949
BseRI GAGGAG 3 cut(s) 1226, 1456, 1798
BseSI GKGCMC 1 cut(s) 705
BseXI GCAGC 3 cut(s) 294, 398, 1390
Bsh1236I CGCG 3 cut(s) 217, 917, 1424
Bsh1285I CGRYCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 921, 1259, 1267
BsiEI CGRYCG 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 1169
BsiSI CCGG 2 cut(s) 479, 1170
BslFI GGGAC 5 cut(s) 485, 952, 994, 1186, 1567
BslI CCNNNNNNNGG 2 cut(s) 431, 1309
BsmAI GTCTC 2 cut(s) 253, 521
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 5 cut(s) 485, 952, 994, 1186, 1567
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 3 cut(s) 921, 1259, 1267
BsoBI CYCGRG 1 cut(s) 1169
Bsp1286I GDGCHC 3 cut(s) 211, 256, 705
Bsp143I GATC 4 cut(s) 212, 644, 877, 1006
BspACI CCGC 3 cut(s) 917, 1110, 1798
BspANI GGCC 3 cut(s) 921, 1259, 1267
BspCNI CTCAG 1 cut(s) 1495
BspFNI CGCG 3 cut(s) 217, 917, 1424
BspLI GGNNCC 2 cut(s) 1314, 1497
BspMI ACCTGC 1 cut(s) 1492
BspPI GGATC 2 cut(s) 885, 1014
BsrDI GCAATG 1 cut(s) 1330
BsrI ACTGG 1 cut(s) 949
BssECI CCNNGG 7 cut(s) 39, 298, 365, 922, 1168, 1169, 1209
BssMI GATC 4 cut(s) 212, 644, 877, 1006
BssT1I CCWWGG 3 cut(s) 39, 365, 922
Bst2UI CCWGG 2 cut(s) 391, 999
Bst4CI ACNGT 6 cut(s) 299, 658, 758, 1567, 1678, 1689
Bst6I CTCTTC 6 cut(s) 19, 53, 242, 302, 705, 1248
BstC8I GCNNGC 1 cut(s) 919
BstDEI CTNAG 4 cut(s) 459, 531, 1503, 1761
BstDSI CCRYGG 1 cut(s) 298
BstENI CCTNNNNNAGG 1 cut(s) 1307
BstF5I GGATG 7 cut(s) 148, 193, 693, 776, 1205, 1222, 1755
BstFNI CGCG 3 cut(s) 217, 917, 1424
BstHHI GCGC 2 cut(s) 219, 917
BstKTI GATC 4 cut(s) 215, 647, 880, 1009
BstMAI GTCTC 2 cut(s) 253, 521
BstMBI GATC 4 cut(s) 212, 644, 877, 1006
BstMCI CGRYCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 3 cut(s) 270, 279, 1795
BstNI CCWGG 2 cut(s) 391, 999
BstSCI CCNGG 4 cut(s) 389, 997, 1168, 1169
BstSFI CTRYAG 2 cut(s) 648, 1674
BstSLI GKGCMC 1 cut(s) 705
BstUI CGCG 3 cut(s) 217, 917, 1424
BstV1I GCAGC 3 cut(s) 294, 398, 1390
BstV2I GAAGAC 2 cut(s) 675, 1107
BstX2I RGATCY 3 cut(s) 644, 877, 1006
BstXI CCANNNNNNTGG 1 cut(s) 929
BstYI RGATCY 3 cut(s) 644, 877, 1006
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 3 cut(s) 921, 1259, 1267
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 7 cut(s) 148, 193, 693, 776, 1205, 1222, 1755
BtsI GCAGTG 2 cut(s) 1134, 1398
BtsIMutI CAGTG 4 cut(s) 581, 1086, 1134, 1398
BveI ACCTGC 1 cut(s) 1492
Cac8I GCNNGC 1 cut(s) 919
CfoI GCGC 2 cut(s) 219, 917
Cfr13I GGNCC 3 cut(s) 919, 947, 1265
Cfr9I CCCGGG 1 cut(s) 1169
CseI GACGC 2 cut(s) 270, 390
Csp6I GTAC 1 cut(s) 1733
CviAII CATG 6 cut(s) 514, 552, 677, 874, 1285, 1613
CviQI GTAC 1 cut(s) 1733
DdeI CTNAG 4 cut(s) 459, 531, 1503, 1761
DpnI GATC 4 cut(s) 214, 646, 879, 1008
DpnII GATC 4 cut(s) 212, 644, 877, 1006
DriI GACNNNNNGTC 1 cut(s) 945
Eam1104I CTCTTC 6 cut(s) 19, 53, 242, 302, 705, 1248
Eam1105I GACNNNNNGTC 1 cut(s) 945
EarI CTCTTC 6 cut(s) 19, 53, 242, 302, 705, 1248
Eco130I CCWWGG 3 cut(s) 39, 365, 922
Eco24I GRGCYC 2 cut(s) 211, 256
Eco47I GGWCC 1 cut(s) 947
Eco57I CTGAAG 1 cut(s) 1620
Eco88I CYCGRG 1 cut(s) 1169
EcoNI CCTNNNNNAGG 1 cut(s) 1307
EcoRII CCWGG 2 cut(s) 389, 997
EcoT14I CCWWGG 3 cut(s) 39, 365, 922
EcoT38I GRGCYC 2 cut(s) 211, 256
ErhI CCWWGG 3 cut(s) 39, 365, 922
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 6 cut(s) 517, 555, 680, 877, 1288, 1616
FaqI GGGAC 5 cut(s) 485, 952, 994, 1186, 1567
FatI CATG 6 cut(s) 513, 551, 676, 873, 1284, 1612
FauI CCCGC 1 cut(s) 910
Fnu4HI GCNGC 3 cut(s) 283, 412, 1404
FokI GGATG 7 cut(s) 155, 200, 700, 783, 1192, 1229, 1742
FriOI GRGCYC 2 cut(s) 211, 256
Fsp4HI GCNGC 3 cut(s) 283, 412, 1404
FspBI CTAG 5 cut(s) 366, 378, 426, 540, 1185
GlaI GCGC 2 cut(s) 218, 916
GluI GCNGC 3 cut(s) 283, 412, 1404
HaeIII GGCC 3 cut(s) 921, 1259, 1267
HapII CCGG 2 cut(s) 479, 1170
HgaI GACGC 2 cut(s) 270, 390
HhaI GCGC 2 cut(s) 219, 917
Hin1II CATG 6 cut(s) 517, 555, 680, 877, 1288, 1616
Hin6I GCGC 2 cut(s) 217, 915
HinP1I GCGC 2 cut(s) 217, 915
HindIII AAGCTT 1 cut(s) 101
HpaII CCGG 2 cut(s) 479, 1170
Hpy166II GTNNAC 2 cut(s) 1134, 1753
Hpy188I TCNGA 8 cut(s) 184, 225, 258, 295, 600, 1210, 1504, 1654
Hpy188III TCNNGA 8 cut(s) 113, 150, 195, 1010, 1097, 1271, 1628, 1638
Hpy8I GTNNAC 2 cut(s) 1134, 1753
Hpy99I CGWCG 2 cut(s) 114, 406
HpyAV CCTTC 5 cut(s) 198, 220, 747, 1509, 1644
HpyCH4III ACNGT 6 cut(s) 299, 658, 758, 1567, 1678, 1689
HpyCH4V TGCA 5 cut(s) 233, 774, 806, 1139, 1238
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 279, 1795
HpyF3I CTNAG 4 cut(s) 459, 531, 1503, 1761
Hsp92II CATG 6 cut(s) 517, 555, 680, 877, 1288, 1616
HspAI GCGC 2 cut(s) 217, 915
Kzo9I GATC 4 cut(s) 212, 644, 877, 1006
LmnI GCTCC 5 cut(s) 41, 240, 555, 1630, 1774
Lsp1109I GCAGC 3 cut(s) 294, 398, 1390
LweI GCATC 4 cut(s) 761, 1075, 1225, 1704
MaeI CTAG 5 cut(s) 366, 378, 426, 540, 1185
MaeIII GTNAC 7 cut(s) 113, 275, 613, 652, 658, 893, 1084
MalI GATC 4 cut(s) 214, 646, 879, 1008
MboI GATC 4 cut(s) 212, 644, 877, 1006
MflI RGATCY 3 cut(s) 644, 877, 1006
MhlI GDGCHC 3 cut(s) 211, 256, 705
MluCI AATT 6 cut(s) 435, 933, 1017, 1074, 1148, 1328
MlyI GAGTC 2 cut(s) 284, 1453
MroXI GAANNNNTTC 1 cut(s) 1152
MseI TTAA 5 cut(s) 510, 954, 1022, 1392, 1410
MspI CCGG 2 cut(s) 479, 1170
MspR9I CCNGG 4 cut(s) 391, 999, 1170, 1171
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 2 cut(s) 391, 999
MvnI CGCG 3 cut(s) 217, 917, 1424
MwoI GCNNNNNNNGC 3 cut(s) 270, 279, 1795
NciI CCSGG 2 cut(s) 1170, 1171
NdeII GATC 4 cut(s) 212, 644, 877, 1006
NlaIII CATG 6 cut(s) 517, 555, 680, 877, 1288, 1616
NlaIV GGNNCC 2 cut(s) 1314, 1497
NmuCI GTSAC 3 cut(s) 113, 275, 613
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 1152
PfeI GAWTC 8 cut(s) 119, 146, 161, 191, 455, 1013, 1053, 1163
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 3 cut(s) 284, 413, 1405
Ple19I CGATCG 1 cut(s) 215
PleI GAGTC 2 cut(s) 284, 1452
PpsI GAGTC 2 cut(s) 284, 1452
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 1 cut(s) 1746
Psp6I CCWGG 2 cut(s) 389, 997
PspGI CCWGG 2 cut(s) 389, 997
PspN4I GGNNCC 2 cut(s) 1314, 1497
PspPI GGNCC 3 cut(s) 919, 947, 1265
PsrI GAACNNNNNNTAC 2 cut(s) 1473, 1505
PsuI RGATCY 3 cut(s) 644, 877, 1006
PvuI CGATCG 1 cut(s) 215
RsaI GTAC 1 cut(s) 1734
RsaNI GTAC 1 cut(s) 1733
SaqAI TTAA 5 cut(s) 510, 954, 1022, 1392, 1410
SatI GCNGC 3 cut(s) 283, 412, 1404
Sau3AI GATC 4 cut(s) 212, 644, 877, 1006
Sau96I GGNCC 3 cut(s) 919, 947, 1265
SchI GAGTC 2 cut(s) 284, 1453
ScrFI CCNGG 4 cut(s) 391, 999, 1170, 1171
SduI GDGCHC 3 cut(s) 211, 256, 705
SfaNI GCATC 4 cut(s) 761, 1075, 1225, 1704
SfcI CTRYAG 2 cut(s) 648, 1674
SinI GGWCC 1 cut(s) 947
SmaI CCCGGG 1 cut(s) 1171
SmlI CTYRAG 2 cut(s) 1269, 1793
SmoI CTYRAG 2 cut(s) 1269, 1793
Sse9I AATT 6 cut(s) 435, 933, 1017, 1074, 1148, 1328
SsiI CCGC 3 cut(s) 917, 1110, 1798
SspMI CTAG 5 cut(s) 366, 378, 426, 540, 1185
StyD4I CCNGG 4 cut(s) 389, 997, 1168, 1169
StyI CCWWGG 3 cut(s) 39, 365, 922
TaaI ACNGT 6 cut(s) 299, 658, 758, 1567, 1678, 1689
TaqI TCGA 4 cut(s) 46, 194, 211, 1573
TasI AATT 6 cut(s) 435, 933, 1017, 1074, 1148, 1328
TfiI GAWTC 8 cut(s) 119, 146, 161, 191, 455, 1013, 1053, 1163
Tru1I TTAA 5 cut(s) 510, 954, 1022, 1392, 1410
Tru9I TTAA 5 cut(s) 510, 954, 1022, 1392, 1410
TscAI CASTG 4 cut(s) 581, 1086, 1141, 1405
TseFI GTSAC 3 cut(s) 113, 275, 613
TseI GCWGC 3 cut(s) 282, 411, 1403
Tsp45I GTSAC 3 cut(s) 113, 275, 613
TspDTI ATGAA 3 cut(s) 972, 1341, 1683
TspGWI ACGGA 3 cut(s) 677, 780, 836
TspMI CCCGGG 1 cut(s) 1169
TspRI CASTG 4 cut(s) 581, 1086, 1141, 1405
VpaK11BI GGWCC 1 cut(s) 947
VspI ATTAAT 1 cut(s) 954
XagI CCTNNNNNAGG 1 cut(s) 1307
XapI RAATTY 2 cut(s) 1074, 1328
XmaI CCCGGG 1 cut(s) 1169
XmaJI CCTAGG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 1152
XspI CTAG 5 cut(s) 366, 378, 426, 540, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.