Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010413

Physical Location & Seq

Genomic Coordinates Forward (+)

26496309 .. 26499168

Gene Structure 2860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31190

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGGCCAAGTCCTCTTCTTCCCATCGTAAGAAACGCGACAAGATTTCCTCTAAGGCTCGAACGAAGAAGAGGAGTAAGAGCAAGAGCAGGAGTAAGAGTAAGAGTGAGAAATATAGATCCAAGAAGGTTCGTCGTCACGATGATTCTCTTTCTTTTTCGGATGAGGATGATTCCAGAAGCTTGAGTTCAGATTCGTTGTTTAGCTCTGGGGATGACCGTAGAAGTAGAAGGGCTCGTTCACGCACTCGGAGGGATGTGAAGGGTAGCAAGAAGAGGGCTCGGAAGCGATCTTATAGCAGCAATAGTAGTGAGGAGTCTCCCCGTCCGAAGAAGAGGAAAGCAACAAAGAAGGTTAAGGAGTATGAGGCGAAGAAGAGAAGCCGTTCGAGGGAGAAGCCTAAGAGAAATGCTAGGACTAGTTCTGTGAGTAGTGAGTCTTGGAGCTGCTCGACTTGTCAGGGTGGGGGTGTTAGTGGTGACGAGATTGAATCTAAAAGACATAGGGGAAGGTCTGAAAAACGAAAGAGAGAGGAAACCGATAGAAACAAGGTTGAGAGTGGGACTGAGAGGAGTAGATATAGATCTAGGAGTCGTTCTTTGCGCAGTCATTATAGCGAGAGTGATTGTCAGACTCAGGAAAGAGTGACCGGTGAGAGCAATGGGAGGAGATTGAGATCAGTTATTGCGGTAGCCGAAGAAGACAATGAAGGCAGATGGTTAGATGAGGATGGGCACAAAGAAGAGATTACATATGATCGTGATGATTACCCTTCTTGTAGAAGTAATGACAGTAATGACGGAGGGAGCAAGAAGGAGTTGGATAATCATTTACATGTTGCATCCGAGGTGAGAATGAGGGTAGAGAGTGAGAAAGAGGAAGAAGCTCTTGTTTCTGATGCAGAAGGAATTAATTCTAGCCGTGATGGAACCATGATGACTGATCATGTTAATGAAAATAAGATCTCTGGGGAAAGTAGTAGTTTGAAAGATGATGATCTGGAGACGATCTTAAGACAGAAGGCTTTAGAAAATCTAAAAAGGTTCAGAGGAAAGCCTCAAAGGATTGCAGTAACTGGTAATCAGGAAGATAAGAAGCAACCCGGTGCAAGGGCTGAATTGGTTCAAACAGACTCCCCCAAGGAGGATATTTCTGAAATAAATGGTCAAATCCGATTAGCAGAAGAGACCAATGAGCCTCCAGTGAAAGATTCCATTTGTGGAAATGAACCTGTCTCTGCCAAGCAAGATGTTGCTTGTCCAACACATCAAGAGCGTGTTGCTGGTATTTCCAAAATGGTTAGCACTACTGCTGTCGTAGATAAACCAAACTTGGCTGCACCAAAATCAATGTCTGGTTCACTAAAAACTCACTCAACTTTGAAGCCAGCACTTGCTTCTCTGGAACCCGCTCAGGAAAGATTGTTGGTAACTGAGAGTAGTGTAGATAACACAGCTTCTGCTACTGCTCAAACTGTGACCCAAAGTAGCAATAATGATGCTCTAGACATCAGCAACGGTTCTGGTTCTACTGCTCCTGAACCTTCTGGAGAGAATATGTCTGGTTTACAGCAAGATGATGCTAAGGATGGTTCACAGTTTGAGCAGAAGACCATGTCTGTGATGCGAGGTAGTGAAATGGTACAGGTAAGCTACAAGGTTTACATCCCGAAGAAAGCCCCTGCTTTGGCGAGGAGGCACCTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

569

Amino Acids

63.6

Weight (kDa)

9.63

Isoelectric Point (pI)

76.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53930
fragaria_vesca	FvH4_3g19480 FvH4_3g19480 FvH4_3g19480
malus_domestica	MD03G1231500.v1.1 MD11G1252600.v1.1
prunus_persica	Prupe.4G176400_v2.0.a1
pyrus_communis	pycom03g17910 pycom11g22400
rosa_chinensis	RchiOBHm_Chr5g0032741
rosa_laevigata	RLG00000033423
rosa_multiflora	Rmu_ssc0000293.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047360 Rroxscaffold_1G00047820
rosa_rugosa	Rorug05G0133500 Rorug05G0133500
rosa_samantha	Rh5AG226100 Rh5BG227200 Rh5CG255000 Rh5DG231900
rosa_wichuraiana	Rw5G020730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	1695
AccBSI	CCGCTC	1 cut(s)	1409
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	686, 1407
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	1641
AfiI	CCNNNNNNNGG	4 cut(s)	388, 1107, 1141, 1684
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	1 cut(s)	832
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	488, 985, 1124, 1381
AhlI	ACTAGT	1 cut(s)	416
AluBI	AGCT	6 cut(s)	180, 204, 444, 884, 1454, 1650
AluI	AGCT	6 cut(s)	180, 204, 444, 884, 1454, 1650
Alw26I	GTCTC	4 cut(s)	321, 995, 1178, 1237
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	2 cut(s)	1073, 1457
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	297, 444, 1334
ArsI	GACNNNNNNTTYG	2 cut(s)	1334, 1366
AseI	ATTAAT	1 cut(s)	909
AsiGI	ACCGGT	1 cut(s)	647
Asp700I	GAANNNNTTC	3 cut(s)	382, 910, 1119
AspLEI	GCGC	1 cut(s)	603
AsuC2I	CCSGG	1 cut(s)	1101
AsuHPI	GGTGA	3 cut(s)	488, 662, 859
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1695
BanII	GRGCYC	2 cut(s)	235, 280
BbsI	GAAGAC	2 cut(s)	705, 1613
BbvI	GCAGC	3 cut(s)	309, 431, 1321
BccI	CCATC	5 cut(s)	30, 708, 722, 917, 1580
BceAI	ACGGC	2 cut(s)	366, 903
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	1 cut(s)	1101
BcoDI	GTCTC	4 cut(s)	321, 995, 1178, 1237
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	5 cut(s)	411, 417, 585, 915, 1502
BfrI	CTTAAG	1 cut(s)	1009
BglII	AGATCT	2 cut(s)	581, 960
BisI	GCNGC	3 cut(s)	298, 445, 1335
BlsI	GCNGC	3 cut(s)	299, 446, 1336
Bme1390I	CCNGG	1 cut(s)	1101
BmiI	GGNNCC	3 cut(s)	928, 1404, 1697
BmrFI	CCNGG	1 cut(s)	1101
BmsI	GCATC	5 cut(s)	848, 886, 1486, 1567, 1611
BpiI	GAAGAC	2 cut(s)	705, 1613
BpmI	CTGGAG	3 cut(s)	1019, 1182, 1566
Bpu10I	CCTNAGC	2 cut(s)	1410, 1581
BpuEI	CTTGAG	2 cut(s)	202, 1685
BpuMI	CCSGG	1 cut(s)	1101
BsaBI	GATNNNNATC	3 cut(s)	580, 673, 993
BsaI	GGTCTC	1 cut(s)	1178
BsaJI	CCNNGG	2 cut(s)	843, 1137
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 1107, 1141, 1684
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	1078, 1199
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	3 cut(s)	580, 673, 993
BseDI	CCNNGG	2 cut(s)	843, 1137
BseGI	GGATG	8 cut(s)	166, 172, 217, 259, 733, 839, 1591, 1662
BseJI	GATNNNNATC	3 cut(s)	580, 673, 993
BseLI	CCNNNNNNNGG	4 cut(s)	388, 1107, 1141, 1684
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	4 cut(s)	555, 647, 1422, 1424
BseNI	ACTGG	2 cut(s)	1078, 1199
BseRI	GAGGAG	5 cut(s)	85, 326, 583, 679, 1705
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	309, 431, 1321
BsgI	GTGCAG	1 cut(s)	1320
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	1695
BshTI	ACCGGT	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	648, 1101
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	4 cut(s)	388, 1107, 1141, 1684
BsmAI	GTCTC	4 cut(s)	321, 995, 1178, 1237
BsmBI	CGTCTC	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	1178
Bsp1286I	GDGCHC	3 cut(s)	235, 280, 735
Bsp143I	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
BspACI	CCGC	2 cut(s)	686, 1407
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	556, 646, 1423, 1423
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	928, 1404, 1697
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	1695
BspTI	CTTAAG	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	1178
BsrBI	CCGCTC	1 cut(s)	1409
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	1078, 1199
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	2 cut(s)	843, 1137
BssMI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
BssT1I	CCWWGG	1 cut(s)	1137
Bst4CI	ACNGT	5 cut(s)	218, 791, 1474, 1517, 1596
Bst6I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1176
BstAFI	CTTAAG	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	1386
BstDEI	CTNAG	7 cut(s)	51, 399, 564, 633, 1410, 1431, 1581
BstF5I	GGATG	8 cut(s)	166, 172, 217, 259, 733, 839, 1591, 1662
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	9 cut(s)	119, 290, 584, 677, 757, 943, 963, 997, 1008
BstMAI	GTCTC	4 cut(s)	321, 995, 1178, 1237
BstMBI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
BstMWI	GCNNNNNNNGC	1 cut(s)	1702
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	1 cut(s)	1099
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	309, 431, 1321
BstV2I	GAAGAC	2 cut(s)	705, 1613
BstX2I	RGATCY	3 cut(s)	116, 581, 960
BstYI	RGATCY	3 cut(s)	116, 581, 960
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	8 cut(s)	166, 172, 217, 259, 733, 839, 1591, 1662
BtsIMutI	CAGTG	1 cut(s)	1206
Cac8I	GCNNGC	1 cut(s)	1386
CaiI	CAGNNNCTG	2 cut(s)	1073, 1457
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	1640
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	4 cut(s)	833, 931, 944, 1612
CviQI	GTAC	1 cut(s)	1640
DdeI	CTNAG	7 cut(s)	51, 399, 564, 633, 1410, 1431, 1581
DpnI	GATC	9 cut(s)	118, 289, 583, 676, 756, 942, 962, 996, 1007
DpnII	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1176
EarI	CTCTTC	7 cut(s)	19, 62, 266, 326, 368, 735, 1176
Eco130I	CCWWGG	1 cut(s)	1137
Eco24I	GRGCYC	2 cut(s)	235, 280
Eco31I	GGTCTC	1 cut(s)	1178
EcoT14I	CCWWGG	1 cut(s)	1137
EcoT38I	GRGCYC	2 cut(s)	235, 280
ErhI	CCWWGG	1 cut(s)	1137
Esp3I	CGTCTC	1 cut(s)	995
FaeI	CATG	4 cut(s)	836, 934, 947, 1615
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	4 cut(s)	832, 930, 943, 1611
FauI	CCCGC	1 cut(s)	1414
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	3 cut(s)	298, 445, 1335
FokI	GGATG	8 cut(s)	173, 179, 224, 266, 740, 826, 1598, 1649
FriOI	GRGCYC	2 cut(s)	235, 280
Fsp4HI	GCNGC	3 cut(s)	298, 445, 1335
FspBI	CTAG	5 cut(s)	411, 417, 585, 915, 1502
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	298, 445, 1335
GsuI	CTGGAG	3 cut(s)	1019, 1182, 1566
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	648, 1101
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	4 cut(s)	836, 934, 947, 1615
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	2 cut(s)	648, 1101
HphI	GGTGA	3 cut(s)	488, 662, 859
Hpy166II	GTNNAC	5 cut(s)	239, 1358, 1565, 1592, 1660
Hpy8I	GTNNAC	5 cut(s)	239, 1358, 1565, 1592, 1660
Hpy99I	CGWCG	1 cut(s)	135
HpyCH4III	ACNGT	5 cut(s)	218, 791, 1474, 1517, 1596
HpyCH4V	TGCA	5 cut(s)	839, 899, 1067, 1106, 1337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1702
HpyF3I	CTNAG	7 cut(s)	51, 399, 564, 633, 1410, 1431, 1581
Hsp92II	CATG	4 cut(s)	836, 934, 947, 1615
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
LmnI	GCTCC	3 cut(s)	441, 804, 1537
Lsp1109I	GCAGC	3 cut(s)	309, 431, 1321
LweI	GCATC	5 cut(s)	848, 886, 1486, 1567, 1611
MaeI	CTAG	5 cut(s)	411, 417, 585, 915, 1502
MaeIII	GTNAC	6 cut(s)	134, 476, 643, 1069, 1426, 1474
MalI	GATC	9 cut(s)	118, 289, 583, 676, 756, 942, 962, 996, 1007
MbiI	CCGCTC	1 cut(s)	1409
MboI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
MflI	RGATCY	3 cut(s)	116, 581, 960
MhlI	GDGCHC	3 cut(s)	235, 280, 735
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	906, 910, 1115
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	323, 443, 598, 625, 1124
MmeI	TCCRAC	2 cut(s)	798, 1283
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	382, 910, 1119
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	354, 909, 948, 1010
MslI	CAYNNNNRTG	3 cut(s)	831, 948, 1616
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	1009
MspI	CCGG	2 cut(s)	648, 1101
MspR9I	CCNGG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	1702
NciI	CCSGG	1 cut(s)	1101
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
NlaIII	CATG	4 cut(s)	836, 934, 947, 1615
NlaIV	GGNNCC	3 cut(s)	928, 1404, 1697
NmuCI	GTSAC	4 cut(s)	134, 476, 643, 1474
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	836
PciI	ACATGT	1 cut(s)	832
PdmI	GAANNNNTTC	3 cut(s)	382, 910, 1119
PfeI	GAWTC	5 cut(s)	143, 170, 191, 488, 1208
PflFI	GACNNNGTC	1 cut(s)	1612
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	299, 446, 1336
PleI	GAGTC	5 cut(s)	322, 442, 597, 625, 1124
PpsI	GAGTC	5 cut(s)	322, 442, 597, 625, 1124
PscI	ACATGT	1 cut(s)	832
PshBI	ATTAAT	1 cut(s)	909
PspN4I	GGNNCC	3 cut(s)	928, 1404, 1697
PstNI	CAGNNNCTG	2 cut(s)	1073, 1457
PsuI	RGATCY	3 cut(s)	116, 581, 960
PsyI	GACNNNGTC	1 cut(s)	1612
RsaI	GTAC	1 cut(s)	1641
RsaNI	GTAC	1 cut(s)	1640
RseI	CAYNNNNRTG	3 cut(s)	831, 948, 1616
SaqAI	TTAA	4 cut(s)	354, 909, 948, 1010
SatI	GCNGC	3 cut(s)	298, 445, 1335
Sau3AI	GATC	9 cut(s)	116, 287, 581, 674, 754, 940, 960, 994, 1005
SchI	GAGTC	5 cut(s)	323, 443, 598, 625, 1124
ScrFI	CCNGG	1 cut(s)	1101
SduI	GDGCHC	3 cut(s)	235, 280, 735
SfaNI	GCATC	5 cut(s)	848, 886, 1486, 1567, 1611
SmiMI	CAYNNNNRTG	3 cut(s)	831, 948, 1616
SmlI	CTYRAG	3 cut(s)	181, 1009, 1700
SmoI	CTYRAG	3 cut(s)	181, 1009, 1700
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	3 cut(s)	906, 910, 1115
SsiI	CCGC	2 cut(s)	686, 1407
SspMI	CTAG	5 cut(s)	411, 417, 585, 915, 1502
StyD4I	CCNGG	1 cut(s)	1099
StyI	CCWWGG	1 cut(s)	1137
TaaI	ACNGT	5 cut(s)	218, 791, 1474, 1517, 1596
TaqI	TCGA	3 cut(s)	58, 386, 449
TasI	AATT	3 cut(s)	906, 910, 1115
TfiI	GAWTC	5 cut(s)	143, 170, 191, 488, 1208
Tru1I	TTAA	4 cut(s)	354, 909, 948, 1010
Tru9I	TTAA	4 cut(s)	354, 909, 948, 1010
TscAI	CASTG	1 cut(s)	1206
TseFI	GTSAC	4 cut(s)	134, 476, 643, 1474
TseI	GCWGC	3 cut(s)	297, 444, 1334
Tsp45I	GTSAC	4 cut(s)	134, 476, 643, 1474
TspDTI	ATGAA	3 cut(s)	720, 966, 1239
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	1 cut(s)	1206
Tth111I	GACNNNGTC	1 cut(s)	1612
Vha464I	CTTAAG	1 cut(s)	1009
VspI	ATTAAT	1 cut(s)	909
XbaI	TCTAGA	1 cut(s)	1501
XceI	RCATGY	1 cut(s)	836
XmnI	GAANNNNTTC	3 cut(s)	382, 910, 1119
XspI	CTAG	5 cut(s)	411, 417, 585, 915, 1502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.