FvH4_3g19490

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014127
Physical Location & Seq
Reverse (-)
12628775 .. 12632146
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19490.t1

Sequence Viewer

Length: 1137 bp
ATGTCAGGCGGTCCTTGGCTCAAACACCTTGCCTCCACTCTCACCTCTCGAGCTTTCACTCTCTCTCGTCCCCCATCTCGCTTCTTCACAACCCACAAGCCCAGAAACCTCTCGCGGCCCAATTCTTTCAATGCTGTATATATCTCCACTTCTTCTACTACTTCTTCAGAGACTCCTGCGCCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCTCTGCCAAAGACATGTCTCTGATATGCTTCAAGATGCTCTATTATGCTTTGGAGCAACTTCTACTAGTGTTGATGAAGATGATGACAATGAGGATTCCAATGAGATTTGCATTACTTCCATATTTCCTGAAGGTGAAGATGTAGATACTTGCATTTCACATGCTGCTGATTCAATAAGCTTGAAAGAGATACCTCGTTATGAAGTTACAATAGGTGAGCAGTATGACTGGATAAAAAAAACTCAGGAATCATTTCATCCTGTTGAGATTACTGAAGGACTCTGGATTGTGCCCTCCTGGAAAACTCCCCCTAATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGTGAGCATCCTACAACTAGGTTATGTCTATTGCTGCTTCATGGTTTGATAAAGGGGGGAGAAAAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCGCAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCTGAAGAGATGCAATTATATATAGTTCCGAGCGAAAATTGCTCAGTTTGGACAGATCCATGTAGATATGTGGAAGAACGGAGCTCATCTGGAGTGGAAGCCATCTCAGAAACAGACAAGTACGATGTCCTAATTGCAAATATACTTTTAAATCCTCTAATGGATTTGGCAGATCAGATTGTCTCTTATGCAAAGCCTGGGGCAGTCATCGGTCTCTCCGGGATTCTCTCTGAGCAGCTTCCATATATTACAGAGCGATATTCGCAGTTCTTGGAAGGCATATCAACTACAGAGATGGATGGTTGGGTCTGTGTCCATGGCAGAAAGAAGCAAATCGTTCCTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

379

Amino Acids

41.27

Weight (kDa)

4.76

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 68 - 372 1.8e-76 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 212 - 313 1.3e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 9, 115, 737
AclWI GGATC 2 cut(s) 728, 836
AcsI RAATTY 2 cut(s) 647, 675
AcuI CTGAAG 4 cut(s) 150, 369, 513, 810
AfaI GTAC 1 cut(s) 908
AflIII ACRYGT 1 cut(s) 232
AgeI ACCGGT 1 cut(s) 581
AgsI TTSAA 4 cut(s) 130, 251, 393, 403
AhlI ACTAGT 1 cut(s) 284
AjnI CCWGG 4 cut(s) 515, 562, 982, 1126
AluBI AGCT 4 cut(s) 53, 399, 870, 1024
AluI AGCT 4 cut(s) 53, 399, 870, 1024
Alw21I GWGCWC 1 cut(s) 872
Alw26I GTCTC 4 cut(s) 164, 241, 973, 1004
AlwI GGATC 2 cut(s) 728, 836
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 5 cut(s) 383, 616, 689, 707, 1021
ApoI RAATTY 2 cut(s) 647, 675
AsiGI ACCGGT 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 11, 117, 785
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 4 cut(s) 34, 365, 446, 596
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 11, 785
BaeGI GKGCMC 1 cut(s) 513
BanII GRGCYC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 872
BbvI GCAGC 5 cut(s) 370, 603, 676, 694, 1033
BccI CCATC 4 cut(s) 82, 896, 1075, 1079
BciT130I CCWGG 4 cut(s) 517, 564, 984, 1128
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 4 cut(s) 164, 241, 973, 1004
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 600
BfmI CTRYAG 2 cut(s) 690, 1074
BisI GCNGC 6 cut(s) 116, 384, 617, 690, 708, 1022
BlsI GCNGC 6 cut(s) 117, 385, 618, 691, 709, 1023
Bme1390I CCNGG 5 cut(s) 517, 564, 984, 1006, 1128
Bme18I GGWCC 2 cut(s) 11, 785
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 11, 117, 785
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 5 cut(s) 517, 564, 984, 1006, 1128
BmsI GCATC 3 cut(s) 244, 598, 786
BpmI CTGGAG 1 cut(s) 897
BpuMI CCSGG 1 cut(s) 1006
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 1004
BsaJI CCNNGG 3 cut(s) 14, 983, 1102
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse118I RCCGGY 1 cut(s) 581
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 4 cut(s) 517, 564, 984, 1128
BseDI CCNNGG 3 cut(s) 14, 983, 1102
BseGI GGATG 3 cut(s) 475, 589, 1090
BseJI GATNNNNATC 1 cut(s) 732
BseMII CTCAG 4 cut(s) 476, 843, 906, 1008
BseNI ACTGG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 5 cut(s) 370, 603, 676, 694, 1033
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 118
BshTI ACCGGT 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 872
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 582, 1005
BslFI GGGAC 1 cut(s) 54
BsmAI GTCTC 4 cut(s) 164, 241, 973, 1004
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 513, 872
Bsp143I GATC 3 cut(s) 733, 841, 958
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 3 cut(s) 9, 115, 737
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 4 cut(s) 475, 842, 905, 1009
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 2 cut(s) 728, 836
BspTNI GGTCTC 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 581
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 3 cut(s) 14, 983, 1102
BssMI GATC 3 cut(s) 733, 841, 958
BssT1I CCWWGG 2 cut(s) 14, 1102
Bst2UI CCWGG 4 cut(s) 517, 564, 984, 1128
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 4 cut(s) 462, 829, 892, 1017
BstDSI CCRYGG 1 cut(s) 1102
BstF5I GGATG 3 cut(s) 475, 589, 1090
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 736, 844, 961
BstMAI GTCTC 4 cut(s) 164, 241, 973, 1004
BstMBI GATC 3 cut(s) 733, 841, 958
BstMWI GCNNNNNNNGC 3 cut(s) 689, 825, 1048
BstNI CCWGG 4 cut(s) 517, 564, 984, 1128
BstNSI RCATGY 2 cut(s) 236, 383
BstSCI CCNGG 5 cut(s) 515, 562, 982, 1004, 1126
BstSFI CTRYAG 2 cut(s) 690, 1074
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 5 cut(s) 370, 603, 676, 694, 1033
BstX2I RGATCY 2 cut(s) 733, 841
BstYI RGATCY 2 cut(s) 733, 841
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 1102
BtsCI GGATG 3 cut(s) 475, 589, 1090
Cac8I GCNNGC 1 cut(s) 741
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 3 cut(s) 11, 117, 785
Csp6I GTAC 1 cut(s) 907
CspAI ACCGGT 1 cut(s) 581
CviAII CATG 5 cut(s) 233, 380, 623, 846, 1103
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 4 cut(s) 462, 829, 892, 1017
DpnI GATC 3 cut(s) 735, 843, 960
DpnII GATC 3 cut(s) 733, 841, 958
DraI TTTAAA 1 cut(s) 936
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 870
Eco130I CCWWGG 2 cut(s) 14, 1102
Eco24I GRGCYC 1 cut(s) 872
Eco31I GGTCTC 1 cut(s) 1004
Eco47I GGWCC 2 cut(s) 11, 785
Eco53kI GAGCTC 1 cut(s) 870
Eco57I CTGAAG 4 cut(s) 150, 369, 513, 810
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 870
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 4 cut(s) 515, 562, 982, 1126
EcoT14I CCWWGG 2 cut(s) 14, 1102
EcoT38I GRGCYC 1 cut(s) 872
ErhI CCWWGG 2 cut(s) 14, 1102
FaeI CATG 5 cut(s) 236, 383, 626, 849, 1106
FaqI GGGAC 1 cut(s) 54
FatI CATG 5 cut(s) 232, 379, 622, 845, 1102
Fnu4HI GCNGC 6 cut(s) 116, 384, 617, 690, 708, 1022
FokI GGATG 3 cut(s) 462, 576, 1097
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 6 cut(s) 116, 384, 617, 690, 708, 1022
FspBI CTAG 2 cut(s) 285, 600
GlaI GCGC 1 cut(s) 180
GluI GCNGC 6 cut(s) 116, 384, 617, 690, 708, 1022
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 1 cut(s) 118
HapII CCGG 2 cut(s) 582, 1005
HhaI GCGC 1 cut(s) 181
Hin1II CATG 5 cut(s) 236, 383, 626, 849, 1106
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 7 cut(s) 172, 314, 389, 467, 498, 559, 1009
HpaII CCGG 2 cut(s) 582, 1005
HphI GGTGA 4 cut(s) 34, 365, 446, 596
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 9 cut(s) 169, 241, 558, 722, 774, 816, 895, 963, 1018
Hpy188III TCNNGA 7 cut(s) 48, 251, 347, 464, 502, 672, 876
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 344, 488, 1055
HpyCH4V TGCA 8 cut(s) 330, 372, 683, 692, 755, 799, 923, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 689, 825, 1048
HpyF3I CTNAG 4 cut(s) 462, 829, 892, 1017
Hsp92II CATG 5 cut(s) 236, 383, 626, 849, 1106
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 733, 841, 958
LmnI GCTCC 2 cut(s) 272, 867
Lsp1109I GCAGC 5 cut(s) 370, 603, 676, 694, 1033
LweI GCATC 3 cut(s) 244, 598, 786
MaeI CTAG 2 cut(s) 285, 600
MaeIII GTNAC 1 cut(s) 424
MalI GATC 3 cut(s) 735, 843, 960
MboI GATC 3 cut(s) 733, 841, 958
MboII GAAGA 7 cut(s) 76, 144, 156, 308, 368, 803, 872
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 733, 841
MhlI GDGCHC 2 cut(s) 513, 872
MlyI GAGTC 2 cut(s) 166, 492
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 7 cut(s) 43, 55, 119, 304, 423, 523, 951
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 696, 935
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 2 cut(s) 582, 1005
MspR9I CCNGG 5 cut(s) 517, 564, 984, 1006, 1128
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 4 cut(s) 517, 564, 984, 1128
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 689, 825, 1048
NciI CCSGG 1 cut(s) 1006
NcoI CCATGG 1 cut(s) 1102
NdeII GATC 3 cut(s) 733, 841, 958
NlaIII CATG 5 cut(s) 236, 383, 626, 849, 1106
NlaIV GGNNCC 1 cut(s) 580
NspI RCATGY 2 cut(s) 236, 383
PaeR7I CTCGAG 1 cut(s) 48
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
PfoI TCCNGGA 3 cut(s) 515, 562, 1004
PinAI ACCGGT 1 cut(s) 581
PkrI GCNGC 6 cut(s) 117, 385, 618, 691, 709, 1023
PleI GAGTC 2 cut(s) 166, 492
PpsI GAGTC 2 cut(s) 166, 492
PpuMI RGGWCCY 1 cut(s) 785
PscI ACATGT 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 872
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 4 cut(s) 515, 562, 982, 1126
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 4 cut(s) 515, 562, 982, 1126
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 3 cut(s) 11, 117, 785
PspPPI RGGWCCY 1 cut(s) 785
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 733, 841
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 1 cut(s) 872
SaqAI TTAA 2 cut(s) 696, 935
SatI GCNGC 6 cut(s) 116, 384, 617, 690, 708, 1022
Sau3AI GATC 3 cut(s) 733, 841, 958
Sau96I GGNCC 3 cut(s) 11, 117, 785
SchI GAGTC 2 cut(s) 166, 492
ScrFI CCNGG 5 cut(s) 517, 564, 984, 1006, 1128
SduI GDGCHC 2 cut(s) 513, 872
SfaNI GCATC 3 cut(s) 244, 598, 786
SfcI CTRYAG 2 cut(s) 690, 1074
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 2 cut(s) 11, 785
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SpeI ACTAGT 1 cut(s) 284
SsiI CCGC 3 cut(s) 9, 115, 737
SspMI CTAG 2 cut(s) 285, 600
SstI GAGCTC 1 cut(s) 872
StyD4I CCNGG 5 cut(s) 515, 562, 982, 1004, 1126
StyI CCWWGG 2 cut(s) 14, 1102
TaqI TCGA 1 cut(s) 49
TaqII GACCGA 1 cut(s) 986
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
Tru1I TTAA 2 cut(s) 696, 935
Tru9I TTAA 2 cut(s) 696, 935
TseI GCWGC 5 cut(s) 383, 616, 689, 707, 1021
TspDTI ATGAA 4 cut(s) 309, 435, 464, 611
TspGWI ACGGA 1 cut(s) 880
VpaK11BI GGWCC 2 cut(s) 11, 785
XapI RAATTY 2 cut(s) 647, 675
XceI RCATGY 2 cut(s) 236, 383
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 285, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.