Rmu_sc0027546.1_g000001

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027546.1
OG0014127
Physical Location & Seq
Forward (+)
268 .. 3548
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027546.1_g000001.1.cds

Sequence Viewer

Length: 1287 bp
atggcggtggctatgaagtatgaacagcagcctaaagaactgcgaaggtttgaagcgtccttatcgagatgcgcagttgttgccttcaacatctgcggctccacccacttcctcaaaagcagccacagagaaccccttcccgctacttcaccaatgtcaggcggtcctttgctcaagcaccttgcctccactctgctcccccctcgagctttcactgtcactcgcccatttccctctcgcttcttcactacccggcagcccagataccgctcgcggcacaattcacttgctgctgcaaacatctccacttcttcttcagagactccctctgccgcccagccctttgctttgcctttccaatctgtcaacattcgctgccaaagacatgtctctgatatgcttcaagaggctctgttatgctttggtgcaagttctactagtgttgatgaagacgatgactatgaggattccgagatttgcattacttccatatttcctgaaggcgaagacgtaaatacttgcatttcctgtgctgctgattccataagcttgaaagagatacctagttatgaagttaatataggtgagcagtacgactggataaagaaaactcaggaatcatttcatcctgttgaaattactgaaggactctggattgtgcccgcctggaaaactccccctgatgcccaagcaacaaatataattctgaatcctggattagcatttggaaccggagagcatcctactacaaggttatgtctgttgctgcttcatggcttgataaaggggggagaacaattcttggactatggcacaggttctggaattcttgcaattgctgcagttaagtttggtgccgctttatcagttggaattgatatagatccacaagcaattacatctgcacaccagaatgctactctgaacaacataggacccaaacagatgcaattatatctagttccgagtgaaaattgctcaacttggacagatccatgtggaaatgtggaagaacggagcgcatttgtagcgggagccatctcagaaacagacaagtacgatgtactaattgcaaatatacttttaaatcccctaatggatttggcagatcagatcgtctcttatgcaaagcctggggcagttattggtctctccgggattctctctgatcagcttccctatattatagagcgatattcacaattcttggaaggtgtatcgactacagagatggatggttgggcctgtgtccatggcagaaagaagcaaaatgttgccggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

428

Amino Acids

46.57

Weight (kDa)

5.19

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 1 cut(s) 274
AclWI GGATC 2 cut(s) 878, 986
AcsI RAATTY 1 cut(s) 825
AcuI CTGAAG 3 cut(s) 300, 519, 663
AfaI GTAC 3 cut(s) 593, 1058, 1065
AfiI CCNNNNNNNGG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 5 cut(s) 53, 88, 404, 553, 635
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 665, 712, 1132
AluBI AGCT 3 cut(s) 209, 549, 1174
AluI AGCT 3 cut(s) 209, 549, 1174
Alw26I GTCTC 4 cut(s) 314, 394, 1123, 1154
AlwI GGATC 2 cut(s) 878, 986
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 1 cut(s) 1242
ApeKI GCWGC 9 cut(s) 28, 120, 256, 290, 293, 375, 533, 766, 839
ApoI RAATTY 1 cut(s) 825
Asp700I GAANNNNTTC 2 cut(s) 135, 621
AspLEI GCGC 2 cut(s) 74, 1022
AspS9I GGNCC 3 cut(s) 164, 935, 1242
AsuC2I CCSGG 2 cut(s) 253, 1156
AsuHPI GGTGA 2 cut(s) 141, 596
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 2 cut(s) 164, 935
BaeGI GKGCMC 1 cut(s) 663
BanI GGYRCC 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 456, 513
BbvI GCAGC 9 cut(s) 40, 132, 268, 277, 280, 362, 520, 753, 826
BccI CCATC 3 cut(s) 1046, 1225, 1229
BciT130I CCWGG 3 cut(s) 667, 714, 1134
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 2 cut(s) 253, 1156
BcoDI GTCTC 4 cut(s) 314, 394, 1123, 1154
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 438, 564, 959
BfmI CTRYAG 2 cut(s) 840, 1224
Bme1390I CCNGG 5 cut(s) 253, 667, 714, 1134, 1156
Bme18I GGWCC 2 cut(s) 164, 935
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 3 cut(s) 164, 935, 1242
BmiI GGNNCC 5 cut(s) 100, 730, 856, 937, 1036
BmrFI CCNGG 5 cut(s) 253, 667, 714, 1134, 1156
BmsI GCATC 4 cut(s) 59, 673, 748, 936
BpiI GAAGAC 2 cut(s) 456, 513
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 253, 1156
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 2 cut(s) 1133, 1252
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 1277
Bse1I ACTGG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 3 cut(s) 667, 714, 1134
BseDI CCNNGG 2 cut(s) 1133, 1252
BseGI GGATG 3 cut(s) 625, 739, 1240
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 626, 1056
BseNI ACTGG 1 cut(s) 602
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 9 cut(s) 40, 132, 268, 277, 280, 362, 520, 753, 826
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 888
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 1244
BshNI GGYRCC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 4 cut(s) 253, 732, 1155, 1278
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 4 cut(s) 314, 394, 1123, 1154
BsmBI CGTCTC 1 cut(s) 1123
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 1244
Bso31I GGTCTC 1 cut(s) 1154
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 5 cut(s) 883, 991, 1108, 1113, 1168
Bsp19I CCATGG 1 cut(s) 1252
BspANI GGCC 1 cut(s) 1244
BspCNI CTCAG 2 cut(s) 625, 1055
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 5 cut(s) 100, 730, 856, 937, 1036
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 2 cut(s) 878, 986
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 1154
BsrBI CCGCTC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 1277
BsrI ACTGG 1 cut(s) 602
BssAI RCCGGY 1 cut(s) 1277
BssECI CCNNGG 2 cut(s) 1133, 1252
BssMI GATC 5 cut(s) 883, 991, 1108, 1113, 1168
BssT1I CCWWGG 1 cut(s) 1252
Bst2UI CCWGG 3 cut(s) 667, 714, 1134
Bst4CI ACNGT 1 cut(s) 217
BstAPI GCANNNNNTGC 2 cut(s) 80, 839
BstC8I GCNNGC 3 cut(s) 272, 663, 1279
BstDEI CTNAG 2 cut(s) 612, 1042
BstDSI CCRYGG 1 cut(s) 1252
BstF5I GGATG 3 cut(s) 625, 739, 1240
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 2 cut(s) 74, 1022
BstKTI GATC 5 cut(s) 886, 994, 1111, 1116, 1171
BstMAI GTCTC 4 cut(s) 314, 394, 1123, 1154
BstMBI GATC 5 cut(s) 883, 991, 1108, 1113, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 80, 839, 1028
BstNI CCWGG 3 cut(s) 667, 714, 1134
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 5 cut(s) 251, 665, 712, 1132, 1154
BstSFI CTRYAG 2 cut(s) 840, 1224
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 9 cut(s) 40, 132, 268, 277, 280, 362, 520, 753, 826
BstV2I GAAGAC 2 cut(s) 456, 513
BstX2I RGATCY 2 cut(s) 883, 991
BstYI RGATCY 2 cut(s) 883, 991
BsuRI GGCC 1 cut(s) 1244
BtgI CCRYGG 1 cut(s) 1252
BtsCI GGATG 3 cut(s) 625, 739, 1240
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 272, 663, 1279
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 2 cut(s) 74, 1022
Cfr10I RCCGGY 1 cut(s) 1277
Cfr13I GGNCC 3 cut(s) 164, 935, 1242
CseI GACGC 1 cut(s) 45
Csp6I GTAC 3 cut(s) 592, 1057, 1064
CviAII CATG 4 cut(s) 386, 773, 996, 1253
CviQI GTAC 3 cut(s) 592, 1057, 1064
DdeI CTNAG 2 cut(s) 612, 1042
DpnI GATC 5 cut(s) 885, 993, 1110, 1115, 1170
DpnII GATC 5 cut(s) 883, 991, 1108, 1113, 1168
DraI TTTAAA 1 cut(s) 1086
Eco130I CCWWGG 1 cut(s) 1252
Eco31I GGTCTC 1 cut(s) 1154
Eco47I GGWCC 2 cut(s) 164, 935
Eco57I CTGAAG 3 cut(s) 300, 519, 663
Eco88I CYCGRG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 3 cut(s) 665, 712, 1132
EcoT14I CCWWGG 1 cut(s) 1252
ErhI CCWWGG 1 cut(s) 1252
Esp3I CGTCTC 1 cut(s) 1123
FaeI CATG 4 cut(s) 389, 776, 999, 1256
FatI CATG 4 cut(s) 385, 772, 995, 1252
FauI CCCGC 3 cut(s) 148, 670, 1024
FbaI TGATCA 1 cut(s) 1168
FokI GGATG 3 cut(s) 612, 726, 1247
FspBI CTAG 3 cut(s) 438, 564, 959
FspI TGCGCA 1 cut(s) 73
GlaI GCGC 2 cut(s) 73, 1021
GsaI CCCAGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 1244
HapII CCGG 4 cut(s) 253, 732, 1155, 1278
HgaI GACGC 1 cut(s) 45
HhaI GCGC 2 cut(s) 74, 1022
Hin1II CATG 4 cut(s) 389, 776, 999, 1256
Hin6I GCGC 2 cut(s) 72, 1020
HinP1I GCGC 2 cut(s) 72, 1020
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 7 cut(s) 322, 467, 539, 617, 648, 709, 1159
HpaII CCGG 4 cut(s) 253, 732, 1155, 1278
HphI GGTGA 2 cut(s) 141, 596
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 9 cut(s) 319, 394, 472, 708, 924, 966, 1045, 1113, 1168
Hpy188III TCNNGA 6 cut(s) 66, 404, 497, 614, 652, 822
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 6 cut(s) 39, 94, 146, 494, 638, 1205
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 510
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 839, 1028
HpyF3I CTNAG 2 cut(s) 612, 1042
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 4 cut(s) 389, 776, 999, 1256
HspAI GCGC 2 cut(s) 72, 1020
KroI GCCGGC 1 cut(s) 1277
KroNI GCCGGC 1 cut(s) 1279
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 5 cut(s) 883, 991, 1108, 1113, 1168
LmnI GCTCC 4 cut(s) 104, 201, 1017, 1034
Lsp1109I GCAGC 9 cut(s) 40, 132, 268, 277, 280, 362, 520, 753, 826
LweI GCATC 4 cut(s) 59, 673, 748, 936
MaeI CTAG 3 cut(s) 438, 564, 959
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 217
MalI GATC 5 cut(s) 885, 993, 1110, 1115, 1170
MbiI CCGCTC 1 cut(s) 270
MboI GATC 5 cut(s) 883, 991, 1108, 1113, 1168
MboII GAAGA 6 cut(s) 235, 303, 306, 461, 518, 1022
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 2 cut(s) 883, 991
MhlI GDGCHC 1 cut(s) 663
MlyI GAGTC 2 cut(s) 316, 642
MmeI TCCRAC 1 cut(s) 850
MnlI CCTC 7 cut(s) 122, 196, 213, 244, 337, 400, 457
MroNI GCCGGC 1 cut(s) 1277
MroXI GAANNNNTTC 2 cut(s) 135, 621
MseI TTAA 3 cut(s) 576, 846, 1085
MslI CAYNNNNRTG 1 cut(s) 912
MspI CCGG 4 cut(s) 253, 732, 1155, 1278
MspR9I CCNGG 5 cut(s) 253, 667, 714, 1134, 1156
MunI CAATTG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 3 cut(s) 667, 714, 1134
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 80, 839, 1028
NaeI GCCGGC 1 cut(s) 1279
NciI CCSGG 2 cut(s) 253, 1156
NcoI CCATGG 1 cut(s) 1252
NdeII GATC 5 cut(s) 883, 991, 1108, 1113, 1168
NgoMIV GCCGGC 1 cut(s) 1277
NlaIII CATG 4 cut(s) 389, 776, 999, 1256
NlaIV GGNNCC 5 cut(s) 100, 730, 856, 937, 1036
NmuCI GTSAC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 73
NspI RCATGY 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 204
PciI ACATGT 1 cut(s) 385
PctI GAATGC 1 cut(s) 919
PdiI GCCGGC 1 cut(s) 1279
PdmI GAANNNNTTC 2 cut(s) 135, 621
PfeI GAWTC 5 cut(s) 467, 539, 617, 709, 1159
PfoI TCCNGGA 2 cut(s) 712, 1154
PleI GAGTC 2 cut(s) 316, 642
PpsI GAGTC 2 cut(s) 316, 642
PpuMI RGGWCCY 1 cut(s) 935
PscI ACATGT 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 3 cut(s) 665, 712, 1132
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 3 cut(s) 665, 712, 1132
PspN4I GGNNCC 5 cut(s) 100, 730, 856, 937, 1036
PspPI GGNCC 3 cut(s) 164, 935, 1242
PspPPI RGGWCCY 1 cut(s) 935
PspXI VCTCGAGB 1 cut(s) 204
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 2 cut(s) 883, 991
RsaI GTAC 3 cut(s) 593, 1058, 1065
RsaNI GTAC 3 cut(s) 592, 1057, 1064
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 3 cut(s) 576, 846, 1085
Sau3AI GATC 5 cut(s) 883, 991, 1108, 1113, 1168
Sau96I GGNCC 3 cut(s) 164, 935, 1242
SchI GAGTC 2 cut(s) 316, 642
ScrFI CCNGG 5 cut(s) 253, 667, 714, 1134, 1156
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 4 cut(s) 59, 673, 748, 936
SfcI CTRYAG 2 cut(s) 840, 1224
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 164, 935
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 2 cut(s) 173, 204
SmoI CTYRAG 2 cut(s) 173, 204
SpeI ACTAGT 1 cut(s) 437
SspMI CTAG 3 cut(s) 438, 564, 959
StyD4I CCNGG 5 cut(s) 251, 665, 712, 1132, 1154
StyI CCWWGG 1 cut(s) 1252
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 65, 205, 1220
TatI WGTACW 1 cut(s) 1063
TauI GCSGC 4 cut(s) 99, 277, 335, 860
TfiI GAWTC 5 cut(s) 467, 539, 617, 709, 1159
Tru1I TTAA 3 cut(s) 576, 846, 1085
Tru9I TTAA 3 cut(s) 576, 846, 1085
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 9 cut(s) 28, 120, 256, 290, 293, 375, 533, 766, 839
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 6 cut(s) 29, 36, 462, 585, 614, 761
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 164, 935
XapI RAATTY 1 cut(s) 825
XceI RCATGY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 135, 621
XspI CTAG 3 cut(s) 438, 564, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.