Rh5AG226200

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014127
Physical Location & Seq
Reverse (-)
27065623 .. 27068871
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG226200.1

Sequence Viewer

Length: 1044 bp
ATGTCAGGCGGTCCTTTGCTCAAGCACCTTGCCTCCGCTCTGCTCCCCCCTCGAGCTTTCACTGTCTCTCGCCCATTTCCCTCTCGCTTCTTCACTACCCGGAAGCCCAGATACCTCTCGCGGCCCAATTCACTTGCTGCTGCAAACATCTCCACTTCTTCTTCAGAGACTCCCTCTGCCGCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCGCTGCCAAAGACATGTCTCTGATATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTTGTGTTGATGAAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGTGAAGACGTAAATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTACGATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCCCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTTCTGCTTCATGGCTTGATAAAGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCCGAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCACATTTGTAGCGGGAGCCATCTCAGAAACAGACAAGTATGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGGTATTAATTGTTCCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

347

Amino Acids

37.34

Weight (kDa)

4.53

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 68 - 342 1.1e-68 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 212 - 309 2.1e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 1 cut(s) 121
AciI CCGC 6 cut(s) 9, 36, 121, 180, 513, 881
AclWI GGATC 2 cut(s) 728, 836
AcsI RAATTY 1 cut(s) 675
AcuI CTGAAG 3 cut(s) 147, 369, 513
AfaI GTAC 2 cut(s) 443, 915
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 251, 403, 485
AjnI CCWGG 3 cut(s) 515, 562, 982
AluBI AGCT 4 cut(s) 56, 257, 399, 1040
AluI AGCT 4 cut(s) 56, 257, 399, 1040
Alw21I GWGCWC 1 cut(s) 872
Alw26I GTCTC 5 cut(s) 70, 161, 241, 973, 1004
AlwI GGATC 2 cut(s) 728, 836
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 6 cut(s) 137, 140, 222, 383, 689, 707
ApoI RAATTY 1 cut(s) 675
AseI ATTAAT 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 471
AspS9I GGNCC 3 cut(s) 11, 123, 785
AsuC2I CCSGG 2 cut(s) 100, 1006
AsuHPI GGTGA 2 cut(s) 365, 446
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 11, 785
BaeGI GKGCMC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbsI GAAGAC 2 cut(s) 303, 363
Bbv12I GWGCWC 1 cut(s) 872
BbvI GCAGC 6 cut(s) 124, 127, 209, 370, 676, 694
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 3 cut(s) 517, 564, 984
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 2 cut(s) 100, 1006
BcoDI GTCTC 5 cut(s) 70, 161, 241, 973, 1004
BfaI CTAG 2 cut(s) 414, 809
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 8 cut(s) 122, 138, 141, 180, 223, 384, 690, 708
BlsI GCNGC 8 cut(s) 123, 139, 142, 181, 224, 385, 691, 709
Bme1390I CCNGG 5 cut(s) 100, 517, 564, 984, 1006
Bme18I GGWCC 2 cut(s) 11, 785
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 11, 123, 785
BmiI GGNNCC 3 cut(s) 580, 787, 886
BmrFI CCNGG 5 cut(s) 100, 517, 564, 984, 1006
BmsI GCATC 3 cut(s) 523, 598, 786
BpiI GAAGAC 2 cut(s) 303, 363
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 2 cut(s) 100, 1006
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 1004
BsaJI CCNNGG 1 cut(s) 983
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 3 cut(s) 517, 564, 984
BseDI CCNNGG 1 cut(s) 983
BseGI GGATG 2 cut(s) 475, 589
BseJI GATNNNNATC 1 cut(s) 732
BseMII CTCAG 2 cut(s) 476, 906
BseNI ACTGG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 6 cut(s) 124, 127, 209, 370, 676, 694
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 872
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 3 cut(s) 100, 582, 1005
BsmAI GTCTC 5 cut(s) 70, 161, 241, 973, 1004
BsmBI CGTCTC 1 cut(s) 973
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 513, 872
Bsp143I GATC 5 cut(s) 733, 841, 958, 963, 1018
BspACI CCGC 6 cut(s) 9, 36, 121, 180, 513, 881
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 475, 905
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 580, 787, 886
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 2 cut(s) 728, 836
BspTNI GGTCTC 1 cut(s) 1004
BsrBI CCGCTC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 983
BssMI GATC 5 cut(s) 733, 841, 958, 963, 1018
Bst2UI CCWGG 3 cut(s) 517, 564, 984
Bst4CI ACNGT 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 462, 892, 1041
BstF5I GGATG 2 cut(s) 475, 589
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 5 cut(s) 736, 844, 961, 966, 1021
BstMAI GTCTC 5 cut(s) 70, 161, 241, 973, 1004
BstMBI GATC 5 cut(s) 733, 841, 958, 963, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 3 cut(s) 517, 564, 984
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 98, 515, 562, 982, 1004
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 6 cut(s) 124, 127, 209, 370, 676, 694
BstV2I GAAGAC 2 cut(s) 303, 363
BstX2I RGATCY 2 cut(s) 733, 841
BstYI RGATCY 2 cut(s) 733, 841
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 475, 589
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 671
Cfr13I GGNCC 3 cut(s) 11, 123, 785
Csp6I GTAC 2 cut(s) 442, 914
CviAII CATG 3 cut(s) 233, 623, 846
CviQI GTAC 2 cut(s) 442, 914
DdeI CTNAG 3 cut(s) 462, 892, 1041
DpnI GATC 5 cut(s) 735, 843, 960, 965, 1020
DpnII GATC 5 cut(s) 733, 841, 958, 963, 1018
DraI TTTAAA 1 cut(s) 936
Eco31I GGTCTC 1 cut(s) 1004
Eco47I GGWCC 2 cut(s) 11, 785
Eco57I CTGAAG 3 cut(s) 147, 369, 513
Eco88I CYCGRG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 515, 562, 982
Esp3I CGTCTC 1 cut(s) 973
FaeI CATG 3 cut(s) 236, 626, 849
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 3 cut(s) 232, 622, 845
FauI CCCGC 2 cut(s) 520, 874
FbaI TGATCA 1 cut(s) 1018
Fnu4HI GCNGC 8 cut(s) 122, 138, 141, 180, 223, 384, 690, 708
FokI GGATG 2 cut(s) 462, 576
Fsp4HI GCNGC 8 cut(s) 122, 138, 141, 180, 223, 384, 690, 708
FspBI CTAG 2 cut(s) 414, 809
GluI GCNGC 8 cut(s) 122, 138, 141, 180, 223, 384, 690, 708
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 124
HapII CCGG 3 cut(s) 100, 582, 1005
Hin1II CATG 3 cut(s) 236, 626, 849
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 7 cut(s) 169, 314, 389, 467, 498, 559, 1009
HpaII CCGG 3 cut(s) 100, 582, 1005
HphI GGTGA 2 cut(s) 365, 446
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 251, 347, 464, 502, 672
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 344, 488
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 3 cut(s) 462, 892, 1041
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 236, 626, 849
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 5 cut(s) 733, 841, 958, 963, 1018
LmnI GCTCC 3 cut(s) 48, 867, 884
Lsp1109I GCAGC 6 cut(s) 124, 127, 209, 370, 676, 694
LweI GCATC 3 cut(s) 523, 598, 786
MaeI CTAG 2 cut(s) 414, 809
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 424
MalI GATC 5 cut(s) 735, 843, 960, 965, 1020
MbiI CCGCTC 1 cut(s) 38
MboI GATC 5 cut(s) 733, 841, 958, 963, 1018
MboII GAAGA 6 cut(s) 82, 150, 153, 308, 368, 872
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 733, 841
MhlI GDGCHC 2 cut(s) 513, 872
MlyI GAGTC 2 cut(s) 163, 492
MmeI TCCRAC 2 cut(s) 342, 700
MnlI CCTC 6 cut(s) 43, 60, 91, 125, 184, 304
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 3 cut(s) 696, 935, 1028
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 3 cut(s) 100, 582, 1005
MspR9I CCNGG 5 cut(s) 100, 517, 564, 984, 1006
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 3 cut(s) 517, 564, 984
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 689
NciI CCSGG 2 cut(s) 100, 1006
NdeII GATC 5 cut(s) 733, 841, 958, 963, 1018
NlaIII CATG 3 cut(s) 236, 626, 849
NlaIV GGNNCC 3 cut(s) 580, 787, 886
NspI RCATGY 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 51
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
PfoI TCCNGGA 2 cut(s) 562, 1004
PkrI GCNGC 8 cut(s) 123, 139, 142, 181, 224, 385, 691, 709
PleI GAGTC 2 cut(s) 163, 492
PpsI GAGTC 2 cut(s) 163, 492
PpuMI RGGWCCY 1 cut(s) 785
PscI ACATGT 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 3 cut(s) 515, 562, 982
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 515, 562, 982
PspN4I GGNNCC 3 cut(s) 580, 787, 886
PspPI GGNCC 3 cut(s) 11, 123, 785
PspPPI RGGWCCY 1 cut(s) 785
PspXI VCTCGAGB 1 cut(s) 51
PsrI GAACNNNNNNTAC 1 cut(s) 1017
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 733, 841
RsaI GTAC 2 cut(s) 443, 915
RsaNI GTAC 2 cut(s) 442, 914
RseI CAYNNNNRTG 1 cut(s) 762
SaqAI TTAA 3 cut(s) 696, 935, 1028
SatI GCNGC 8 cut(s) 122, 138, 141, 180, 223, 384, 690, 708
Sau3AI GATC 5 cut(s) 733, 841, 958, 963, 1018
Sau96I GGNCC 3 cut(s) 11, 123, 785
SchI GAGTC 2 cut(s) 163, 492
ScrFI CCNGG 5 cut(s) 100, 517, 564, 984, 1006
SduI GDGCHC 2 cut(s) 513, 872
SfaNI GCATC 3 cut(s) 523, 598, 786
SfcI CTRYAG 1 cut(s) 690
Sfr274I CTCGAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 11, 785
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 2 cut(s) 20, 51
SmoI CTYRAG 2 cut(s) 20, 51
SsiI CCGC 6 cut(s) 9, 36, 121, 180, 513, 881
SspMI CTAG 2 cut(s) 414, 809
StyD4I CCNGG 5 cut(s) 98, 515, 562, 982, 1004
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 52
TaqII GACCGA 1 cut(s) 986
TatI WGTACW 1 cut(s) 913
TauI GCSGC 2 cut(s) 124, 182
TfiI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
Tru1I TTAA 3 cut(s) 696, 935, 1028
Tru9I TTAA 3 cut(s) 696, 935, 1028
TscAI CASTG 1 cut(s) 67
TseI GCWGC 6 cut(s) 137, 140, 222, 383, 689, 707
TspDTI ATGAA 4 cut(s) 309, 435, 464, 611
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 11, 785
VspI ATTAAT 1 cut(s) 1028
XapI RAATTY 1 cut(s) 675
XceI RCATGY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 414, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.