Rw5G020740

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014127
Physical Location & Seq
Reverse (-)
27460947 .. 27464237
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020740.1

Sequence Viewer

Length: 1140 bp
ATGTCAGGCGGTCCTTTGCTCAAGCACCTTGCCTCCACTCTGCTCCCCCCTCGAGCTTTCACTGTCACTCGCCCATTTCCCTCTCGCTTCTTCACTACCCGGAAGCCCAGATACCTCTCGCGGCCCAATTCACTTGCTGCTGCAAACATCTCCACTTCTTCTTCTTCAGAGACTCCCTCTGCCGCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCGCTGCCAAAGACATGTCTCTGATATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTAGTGTTGATGGAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGCGAAGACGTAAATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTAATATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCCCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAAGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCCAAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCGCATTTGTAGCGGGAGCCATCTCAGAAACAGACAAGTACGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGCTTCCCTATATTATAGAGCGATATTCACAATTCTTGGAAGGTGTATCGACTACAGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCCGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

379

Amino Acids

40.91

Weight (kDa)

4.76

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 69 - 373 1.4e-75 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 213 - 317 1.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AciI CCGC 5 cut(s) 9, 121, 183, 516, 884
AclWI GGATC 2 cut(s) 731, 839
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 3 cut(s) 150, 372, 516
AfaI GTAC 3 cut(s) 446, 911, 918
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 254, 406, 488
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 3 cut(s) 518, 565, 985
AluBI AGCT 4 cut(s) 56, 260, 402, 1027
AluI AGCT 4 cut(s) 56, 260, 402, 1027
Alw26I GTCTC 5 cut(s) 164, 244, 294, 976, 1007
AlwI GGATC 2 cut(s) 731, 839
AlwNI CAGNNNCTG 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 122, 1095
ApeKI GCWGC 7 cut(s) 137, 140, 225, 386, 619, 692, 710
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 1 cut(s) 875
AspS9I GGNCC 4 cut(s) 11, 123, 788, 1095
AsuC2I CCSGG 2 cut(s) 100, 1009
AsuHPI GGTGA 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 11, 788
BaeGI GKGCMC 1 cut(s) 516
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 7 cut(s) 124, 127, 212, 373, 606, 679, 697
BccI CCATC 4 cut(s) 290, 899, 1078, 1082
BciT130I CCWGG 3 cut(s) 520, 567, 987
BclI TGATCA 1 cut(s) 1021
BcnI CCSGG 2 cut(s) 100, 1009
BcoDI GTCTC 5 cut(s) 164, 244, 294, 976, 1007
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 3 cut(s) 288, 417, 812
BfmI CTRYAG 2 cut(s) 693, 1077
BisI GCNGC 9 cut(s) 122, 138, 141, 183, 226, 387, 620, 693, 711
BlsI GCNGC 9 cut(s) 123, 139, 142, 184, 227, 388, 621, 694, 712
Bme1390I CCNGG 5 cut(s) 100, 520, 567, 987, 1009
Bme18I GGWCC 2 cut(s) 11, 788
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 4 cut(s) 11, 123, 788, 1095
BmiI GGNNCC 3 cut(s) 583, 790, 889
BmrFI CCNGG 5 cut(s) 100, 520, 567, 987, 1009
BmsI GCATC 3 cut(s) 526, 601, 789
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 2 cut(s) 100, 1009
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 2 cut(s) 986, 1105
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse118I RCCGGY 1 cut(s) 1130
Bse1I ACTGG 1 cut(s) 455
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 3 cut(s) 520, 567, 987
BseDI CCNNGG 2 cut(s) 986, 1105
BseGI GGATG 3 cut(s) 478, 592, 1093
BseJI GATNNNNATC 1 cut(s) 735
BseMII CTCAG 2 cut(s) 479, 909
BseNI ACTGG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 7 cut(s) 124, 127, 212, 373, 606, 679, 697
BseYI CCCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 124, 1097
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 4 cut(s) 100, 585, 1008, 1131
BsmAI GTCTC 5 cut(s) 164, 244, 294, 976, 1007
BsmBI CGTCTC 2 cut(s) 294, 976
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 2 cut(s) 124, 1097
Bso31I GGTCTC 1 cut(s) 1007
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 5 cut(s) 736, 844, 961, 966, 1021
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 5 cut(s) 9, 121, 183, 516, 884
BspANI GGCC 2 cut(s) 124, 1097
BspCNI CTCAG 2 cut(s) 478, 908
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 583, 790, 889
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 2 cut(s) 731, 839
BspTNI GGTCTC 1 cut(s) 1007
BsrFI RCCGGY 1 cut(s) 1130
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 1130
BssECI CCNNGG 2 cut(s) 986, 1105
BssMI GATC 5 cut(s) 736, 844, 961, 966, 1021
BssT1I CCWWGG 1 cut(s) 1105
Bst2UI CCWGG 3 cut(s) 520, 567, 987
Bst4CI ACNGT 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 516, 1132
BstDEI CTNAG 2 cut(s) 465, 895
BstDSI CCRYGG 1 cut(s) 1105
BstF5I GGATG 3 cut(s) 478, 592, 1093
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 875
BstKTI GATC 5 cut(s) 739, 847, 964, 969, 1024
BstMAI GTCTC 5 cut(s) 164, 244, 294, 976, 1007
BstMBI GATC 5 cut(s) 736, 844, 961, 966, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 692, 881
BstNI CCWGG 3 cut(s) 520, 567, 987
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 98, 518, 565, 985, 1007
BstSFI CTRYAG 2 cut(s) 693, 1077
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 7 cut(s) 124, 127, 212, 373, 606, 679, 697
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 736, 844
BstYI RGATCY 2 cut(s) 736, 844
BsuRI GGCC 2 cut(s) 124, 1097
BtgI CCRYGG 1 cut(s) 1105
BtsCI GGATG 3 cut(s) 478, 592, 1093
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 516, 1132
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 875
Cfr10I RCCGGY 1 cut(s) 1130
Cfr13I GGNCC 4 cut(s) 11, 123, 788, 1095
Csp6I GTAC 3 cut(s) 445, 910, 917
CviAII CATG 4 cut(s) 236, 626, 849, 1106
CviQI GTAC 3 cut(s) 445, 910, 917
DdeI CTNAG 2 cut(s) 465, 895
DpnI GATC 5 cut(s) 738, 846, 963, 968, 1023
DpnII GATC 5 cut(s) 736, 844, 961, 966, 1021
DraI TTTAAA 1 cut(s) 939
Eco130I CCWWGG 1 cut(s) 1105
Eco31I GGTCTC 1 cut(s) 1007
Eco47I GGWCC 2 cut(s) 11, 788
Eco57I CTGAAG 3 cut(s) 150, 372, 516
Eco88I CYCGRG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 788
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 518, 565, 985
EcoT14I CCWWGG 1 cut(s) 1105
ErhI CCWWGG 1 cut(s) 1105
Esp3I CGTCTC 2 cut(s) 294, 976
FaeI CATG 4 cut(s) 239, 629, 852, 1109
FatI CATG 4 cut(s) 235, 625, 848, 1105
FauI CCCGC 2 cut(s) 523, 877
FbaI TGATCA 1 cut(s) 1021
Fnu4HI GCNGC 9 cut(s) 122, 138, 141, 183, 226, 387, 620, 693, 711
FokI GGATG 3 cut(s) 465, 579, 1100
Fsp4HI GCNGC 9 cut(s) 122, 138, 141, 183, 226, 387, 620, 693, 711
FspBI CTAG 3 cut(s) 288, 417, 812
GlaI GCGC 1 cut(s) 874
GluI GCNGC 9 cut(s) 122, 138, 141, 183, 226, 387, 620, 693, 711
GsaI CCCAGC 1 cut(s) 190
HaeIII GGCC 2 cut(s) 124, 1097
HapII CCGG 4 cut(s) 100, 585, 1008, 1131
HhaI GCGC 1 cut(s) 875
Hin1II CATG 4 cut(s) 239, 629, 852, 1109
Hin6I GCGC 1 cut(s) 873
HinP1I GCGC 1 cut(s) 873
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 7 cut(s) 172, 317, 392, 470, 501, 562, 1012
HpaII CCGG 4 cut(s) 100, 585, 1008, 1131
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 5 cut(s) 254, 350, 467, 505, 675
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 347, 491, 1058
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 881
HpyF3I CTNAG 2 cut(s) 465, 895
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 239, 629, 852, 1109
HspAI GCGC 1 cut(s) 873
KroI GCCGGC 1 cut(s) 1130
KroNI GCCGGC 1 cut(s) 1132
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 5 cut(s) 736, 844, 961, 966, 1021
LmnI GCTCC 3 cut(s) 48, 870, 887
Lsp1109I GCAGC 7 cut(s) 124, 127, 212, 373, 606, 679, 697
LweI GCATC 3 cut(s) 526, 601, 789
MaeI CTAG 3 cut(s) 288, 417, 812
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 64
MalI GATC 5 cut(s) 738, 846, 963, 968, 1023
MboI GATC 5 cut(s) 736, 844, 961, 966, 1021
MboII GAAGA 6 cut(s) 82, 150, 153, 156, 371, 875
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 2 cut(s) 736, 844
MhlI GDGCHC 1 cut(s) 516
MlyI GAGTC 2 cut(s) 166, 495
MmeI TCCRAC 2 cut(s) 345, 703
MnlI CCTC 6 cut(s) 43, 60, 91, 125, 187, 307
MroNI GCCGGC 1 cut(s) 1130
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 3 cut(s) 429, 699, 938
MslI CAYNNNNRTG 1 cut(s) 765
MspI CCGG 4 cut(s) 100, 585, 1008, 1131
MspR9I CCNGG 5 cut(s) 100, 520, 567, 987, 1009
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 3 cut(s) 520, 567, 987
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 692, 881
NaeI GCCGGC 1 cut(s) 1132
NciI CCSGG 2 cut(s) 100, 1009
NcoI CCATGG 1 cut(s) 1105
NdeII GATC 5 cut(s) 736, 844, 961, 966, 1021
NgoMIV GCCGGC 1 cut(s) 1130
NlaIII CATG 4 cut(s) 239, 629, 852, 1109
NlaIV GGNNCC 3 cut(s) 583, 790, 889
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 51
PciI ACATGT 1 cut(s) 235
PctI GAATGC 1 cut(s) 772
PdiI GCCGGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 5 cut(s) 317, 392, 470, 562, 1012
PfoI TCCNGGA 2 cut(s) 565, 1007
PkrI GCNGC 9 cut(s) 123, 139, 142, 184, 227, 388, 621, 694, 712
PleI GAGTC 2 cut(s) 166, 495
PpsI GAGTC 2 cut(s) 166, 495
PpuMI RGGWCCY 1 cut(s) 788
PscI ACATGT 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 788
Psp6I CCWGG 3 cut(s) 518, 565, 985
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 3 cut(s) 518, 565, 985
PspN4I GGNNCC 3 cut(s) 583, 790, 889
PspPI GGNCC 4 cut(s) 11, 123, 788, 1095
PspPPI RGGWCCY 1 cut(s) 788
PspXI VCTCGAGB 1 cut(s) 51
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 2 cut(s) 736, 844
RsaI GTAC 3 cut(s) 446, 911, 918
RsaNI GTAC 3 cut(s) 445, 910, 917
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 3 cut(s) 429, 699, 938
SatI GCNGC 9 cut(s) 122, 138, 141, 183, 226, 387, 620, 693, 711
Sau3AI GATC 5 cut(s) 736, 844, 961, 966, 1021
Sau96I GGNCC 4 cut(s) 11, 123, 788, 1095
SchI GAGTC 2 cut(s) 166, 495
ScrFI CCNGG 5 cut(s) 100, 520, 567, 987, 1009
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 3 cut(s) 526, 601, 789
SfcI CTRYAG 2 cut(s) 693, 1077
Sfr274I CTCGAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 11, 788
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 20, 51
SmoI CTYRAG 2 cut(s) 20, 51
SpeI ACTAGT 1 cut(s) 287
SsiI CCGC 5 cut(s) 9, 121, 183, 516, 884
SspMI CTAG 3 cut(s) 288, 417, 812
StyD4I CCNGG 5 cut(s) 98, 518, 565, 985, 1007
StyI CCWWGG 1 cut(s) 1105
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 52, 1073
TaqII GACCGA 1 cut(s) 989
TatI WGTACW 1 cut(s) 916
TauI GCSGC 2 cut(s) 124, 185
TfiI GAWTC 5 cut(s) 317, 392, 470, 562, 1012
Tru1I TTAA 3 cut(s) 429, 699, 938
Tru9I TTAA 3 cut(s) 429, 699, 938
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 7 cut(s) 137, 140, 225, 386, 619, 692, 710
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 438, 467, 614
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 11, 788
XapI RAATTY 1 cut(s) 678
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 3 cut(s) 288, 417, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.