Rh5CG255100

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014127
Physical Location & Seq
Reverse (-)
27033933 .. 27037240
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG255100.1

Sequence Viewer

Length: 1137 bp
ATGTCAGGCGGTCCTTTGCTCAAGCACCTTGCCTCCACTCTGCTCCCCCCTCGAGCTTTCACTGTCACTCGCCCATTTCCCTCTCGCTTCTTCACTACCCGGAAGCCCAGATACCTCTCGCGGCCCAATTCACTTGCTGCTGCAAACATCTCCACTTCTTCTTCAGAGACTCCCTCTGCTGCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCGCTGCCAAAGACATGTCTCTGATATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTAGTGTTGATGGAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGCGAAGACGTAAATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTACGATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCCCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAAGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCCGAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCGCATTTGTAGCGGGAGCCATCTCAGAAACAGACAAGTACGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGCTTCCCTATATTATAGAGCGATATTCACAGTTCTTGGAAGGTGTATCGACTACAGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

378

Amino Acids

40.82

Weight (kDa)

4.67

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 68 - 372 2e-75 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 212 - 314 1.7e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AciI CCGC 4 cut(s) 9, 121, 513, 881
AclWI GGATC 2 cut(s) 728, 836
AcsI RAATTY 1 cut(s) 675
AcuI CTGAAG 3 cut(s) 147, 369, 513
AfaI GTAC 3 cut(s) 443, 908, 915
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 251, 403, 485
AhlI ACTAGT 1 cut(s) 284
AjnI CCWGG 3 cut(s) 515, 562, 982
AluBI AGCT 4 cut(s) 56, 257, 399, 1024
AluI AGCT 4 cut(s) 56, 257, 399, 1024
Alw26I GTCTC 5 cut(s) 161, 241, 291, 973, 1004
AlwI GGATC 2 cut(s) 728, 836
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 122, 1092
ApeKI GCWGC 8 cut(s) 137, 140, 179, 222, 383, 616, 689, 707
ApoI RAATTY 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 4 cut(s) 11, 123, 785, 1092
AsuC2I CCSGG 2 cut(s) 100, 1006
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 11, 785
BaeGI GKGCMC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 8 cut(s) 124, 127, 166, 209, 370, 603, 676, 694
BccI CCATC 4 cut(s) 287, 896, 1075, 1079
BciT130I CCWGG 3 cut(s) 517, 564, 984
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 2 cut(s) 100, 1006
BcoDI GTCTC 5 cut(s) 161, 241, 291, 973, 1004
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 3 cut(s) 285, 414, 809
BfmI CTRYAG 2 cut(s) 690, 1074
BisI GCNGC 9 cut(s) 122, 138, 141, 180, 223, 384, 617, 690, 708
BlsI GCNGC 9 cut(s) 123, 139, 142, 181, 224, 385, 618, 691, 709
Bme1390I CCNGG 5 cut(s) 100, 517, 564, 984, 1006
Bme18I GGWCC 2 cut(s) 11, 785
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 4 cut(s) 11, 123, 785, 1092
BmiI GGNNCC 3 cut(s) 580, 787, 886
BmrFI CCNGG 5 cut(s) 100, 517, 564, 984, 1006
BmsI GCATC 3 cut(s) 523, 598, 786
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 2 cut(s) 100, 1006
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 1004
BsaJI CCNNGG 2 cut(s) 983, 1102
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 3 cut(s) 517, 564, 984
BseDI CCNNGG 2 cut(s) 983, 1102
BseGI GGATG 3 cut(s) 475, 589, 1090
BseJI GATNNNNATC 1 cut(s) 732
BseMII CTCAG 2 cut(s) 476, 906
BseNI ACTGG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 8 cut(s) 124, 127, 166, 209, 370, 603, 676, 694
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 124, 1094
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 3 cut(s) 100, 582, 1005
BsmAI GTCTC 5 cut(s) 161, 241, 291, 973, 1004
BsmBI CGTCTC 2 cut(s) 291, 973
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 2 cut(s) 124, 1094
Bso31I GGTCTC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 5 cut(s) 733, 841, 958, 963, 1018
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 4 cut(s) 9, 121, 513, 881
BspANI GGCC 2 cut(s) 124, 1094
BspCNI CTCAG 2 cut(s) 475, 905
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 580, 787, 886
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 2 cut(s) 728, 836
BspTNI GGTCTC 1 cut(s) 1004
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 983, 1102
BssMI GATC 5 cut(s) 733, 841, 958, 963, 1018
BssT1I CCWWGG 1 cut(s) 1102
Bst2UI CCWGG 3 cut(s) 517, 564, 984
Bst4CI ACNGT 2 cut(s) 64, 1053
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 513, 1129
BstDEI CTNAG 2 cut(s) 462, 892
BstDSI CCRYGG 1 cut(s) 1102
BstF5I GGATG 3 cut(s) 475, 589, 1090
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 5 cut(s) 736, 844, 961, 966, 1021
BstMAI GTCTC 5 cut(s) 161, 241, 291, 973, 1004
BstMBI GATC 5 cut(s) 733, 841, 958, 963, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 689, 878
BstNI CCWGG 3 cut(s) 517, 564, 984
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 98, 515, 562, 982, 1004
BstSFI CTRYAG 2 cut(s) 690, 1074
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 8 cut(s) 124, 127, 166, 209, 370, 603, 676, 694
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 733, 841
BstYI RGATCY 2 cut(s) 733, 841
BsuRI GGCC 2 cut(s) 124, 1094
BtgI CCRYGG 1 cut(s) 1102
BtsCI GGATG 3 cut(s) 475, 589, 1090
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 513, 1129
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 872
Cfr13I GGNCC 4 cut(s) 11, 123, 785, 1092
Csp6I GTAC 3 cut(s) 442, 907, 914
CviAII CATG 4 cut(s) 233, 623, 846, 1103
CviQI GTAC 3 cut(s) 442, 907, 914
DdeI CTNAG 2 cut(s) 462, 892
DpnI GATC 5 cut(s) 735, 843, 960, 965, 1020
DpnII GATC 5 cut(s) 733, 841, 958, 963, 1018
DraI TTTAAA 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 1102
Eco31I GGTCTC 1 cut(s) 1004
Eco47I GGWCC 2 cut(s) 11, 785
Eco57I CTGAAG 3 cut(s) 147, 369, 513
Eco88I CYCGRG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 515, 562, 982
EcoT14I CCWWGG 1 cut(s) 1102
ErhI CCWWGG 1 cut(s) 1102
Esp3I CGTCTC 2 cut(s) 291, 973
FaeI CATG 4 cut(s) 236, 626, 849, 1106
FatI CATG 4 cut(s) 232, 622, 845, 1102
FauI CCCGC 2 cut(s) 520, 874
FbaI TGATCA 1 cut(s) 1018
Fnu4HI GCNGC 9 cut(s) 122, 138, 141, 180, 223, 384, 617, 690, 708
FokI GGATG 3 cut(s) 462, 576, 1097
Fsp4HI GCNGC 9 cut(s) 122, 138, 141, 180, 223, 384, 617, 690, 708
FspBI CTAG 3 cut(s) 285, 414, 809
GlaI GCGC 1 cut(s) 871
GluI GCNGC 9 cut(s) 122, 138, 141, 180, 223, 384, 617, 690, 708
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 124, 1094
HapII CCGG 3 cut(s) 100, 582, 1005
HhaI GCGC 1 cut(s) 872
Hin1II CATG 4 cut(s) 236, 626, 849, 1106
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 7 cut(s) 169, 314, 389, 467, 498, 559, 1009
HpaII CCGG 3 cut(s) 100, 582, 1005
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 251, 347, 464, 502, 672
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 344, 488, 1055
HpyCH4III ACNGT 2 cut(s) 64, 1053
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 878
HpyF3I CTNAG 2 cut(s) 462, 892
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 4 cut(s) 236, 626, 849, 1106
HspAI GCGC 1 cut(s) 870
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 5 cut(s) 733, 841, 958, 963, 1018
LmnI GCTCC 3 cut(s) 48, 867, 884
Lsp1109I GCAGC 8 cut(s) 124, 127, 166, 209, 370, 603, 676, 694
LweI GCATC 3 cut(s) 523, 598, 786
MaeI CTAG 3 cut(s) 285, 414, 809
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 64, 424
MalI GATC 5 cut(s) 735, 843, 960, 965, 1020
MboI GATC 5 cut(s) 733, 841, 958, 963, 1018
MboII GAAGA 5 cut(s) 82, 150, 153, 368, 872
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 733, 841
MhlI GDGCHC 1 cut(s) 513
MlyI GAGTC 2 cut(s) 163, 492
MmeI TCCRAC 2 cut(s) 342, 700
MnlI CCTC 6 cut(s) 43, 60, 91, 125, 184, 304
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 696, 935
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 3 cut(s) 100, 582, 1005
MspR9I CCNGG 5 cut(s) 100, 517, 564, 984, 1006
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 3 cut(s) 517, 564, 984
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 689, 878
NciI CCSGG 2 cut(s) 100, 1006
NcoI CCATGG 1 cut(s) 1102
NdeII GATC 5 cut(s) 733, 841, 958, 963, 1018
NlaIII CATG 4 cut(s) 236, 626, 849, 1106
NlaIV GGNNCC 3 cut(s) 580, 787, 886
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 51
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
PfoI TCCNGGA 2 cut(s) 562, 1004
PkrI GCNGC 9 cut(s) 123, 139, 142, 181, 224, 385, 618, 691, 709
PleI GAGTC 2 cut(s) 163, 492
PpsI GAGTC 2 cut(s) 163, 492
PpuMI RGGWCCY 1 cut(s) 785
PscI ACATGT 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 3 cut(s) 515, 562, 982
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 515, 562, 982
PspN4I GGNNCC 3 cut(s) 580, 787, 886
PspPI GGNCC 4 cut(s) 11, 123, 785, 1092
PspPPI RGGWCCY 1 cut(s) 785
PspXI VCTCGAGB 1 cut(s) 51
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 733, 841
RsaI GTAC 3 cut(s) 443, 908, 915
RsaNI GTAC 3 cut(s) 442, 907, 914
RseI CAYNNNNRTG 1 cut(s) 762
SaqAI TTAA 2 cut(s) 696, 935
SatI GCNGC 9 cut(s) 122, 138, 141, 180, 223, 384, 617, 690, 708
Sau3AI GATC 5 cut(s) 733, 841, 958, 963, 1018
Sau96I GGNCC 4 cut(s) 11, 123, 785, 1092
SchI GAGTC 2 cut(s) 163, 492
ScrFI CCNGG 5 cut(s) 100, 517, 564, 984, 1006
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 3 cut(s) 523, 598, 786
SfcI CTRYAG 2 cut(s) 690, 1074
Sfr274I CTCGAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 11, 785
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 2 cut(s) 20, 51
SmoI CTYRAG 2 cut(s) 20, 51
SpeI ACTAGT 1 cut(s) 284
SsiI CCGC 4 cut(s) 9, 121, 513, 881
SspMI CTAG 3 cut(s) 285, 414, 809
StyD4I CCNGG 5 cut(s) 98, 515, 562, 982, 1004
StyI CCWWGG 1 cut(s) 1102
TaaI ACNGT 2 cut(s) 64, 1053
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 52, 1070
TaqII GACCGA 1 cut(s) 986
TatI WGTACW 1 cut(s) 913
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 5 cut(s) 314, 389, 467, 559, 1009
Tru1I TTAA 2 cut(s) 696, 935
Tru9I TTAA 2 cut(s) 696, 935
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 8 cut(s) 137, 140, 179, 222, 383, 616, 689, 707
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 435, 464, 611
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 11, 785
XapI RAATTY 1 cut(s) 675
XceI RCATGY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 285, 414, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.