Rmu_ssc0000293.1_g000003

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000293.1
OG0014127
Physical Location & Seq
Reverse (-)
7145 .. 11117
3973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000293.1_g000003.1.cds

Sequence Viewer

Length: 1389 bp
atgagccgccgaggaagctataggaggctcgggtatgggaaagggacccgagttgagagttcgggttatggtgatgaaccgccaaggaggcttgggtatggaaggcttggtggttatggggggaagggaggagacctcaaaagcagccacagagaaccccttcccgctacttcaccaatgtcaggcggtcctttgctcaagcaccttgcctccactctgcttccccctcgagctttcactgtcactcgcccatttccctctcgcttcttcactacccggaagcccagataccgctcgtggcccaattcacttgctgctgcaaacatctccacttcttcttcttcagagactccctctgccgcccagccctttgctttgcctttccaatctgtcaacattcgctgccaaagacatgtctctgtgagcttcttttccttctcttctttgttgaacttttgcttttcagttcaatatttggactgggtttatgctcatgatatgcttcaagaggctctgttatgctttggtgcaagttctactagtgttgatgaagacgatgactatgaggattccgagatttgcattacttccatatttcctgaaggcgaagacgtaaatacttgcatttcctgtgctgctgattccataagcttgaaagagatacctagttatgaagttaatataggtgagcagtacgactggataaagaaaactcaggaatcatttcatcctgttgaaattactgaaggactctggattgtgcccgcctggaaaactccccctgattcccaagcaacaaatataattctgaatcctggattagcatttggaactggagagcatcctactacaaggttatgtctgttgctgcttcatggcttgataaaggggggagaacaattcttggactatggcacaggttctggaattcttgcaattgctgcagttaagtttggtgctgccttatcagtcggaattgatatagatccacaagcaattacatctgcacaccagaatgctactctgaacaacataggacccaaacagatgcaattatatctagttccgagtgaaaattgctcaacttggacagatccatgtggaaatgtggaagaacggagcgcatttgtagcgggagccatctcagaaacagacaagtacgatgtactaattgcaaatatacttttaaatcccctaatggatttggcagatcagatcgtctcttatgcaaagcctggggcagttattggtctctccgggattctctctgatcagcttccctatattatagagcgatattcacaattcttggaaggtgtatcgactacagagatggatggttgggcctgtgtccatggcagaaagaagcaaaatgttgccggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

462

Amino Acids

50.27

Weight (kDa)

5.37

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 294
AciI CCGC 8 cut(s) 7, 80, 165, 186, 292, 360, 765, 1133
AclWI GGATC 2 cut(s) 980, 1088
AcsI RAATTY 1 cut(s) 927
AcuI CTGAAG 3 cut(s) 327, 621, 765
AfaI GTAC 3 cut(s) 695, 1160, 1167
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 5 cut(s) 451, 470, 506, 655, 737
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 3 cut(s) 767, 814, 1234
AluBI AGCT 5 cut(s) 18, 233, 426, 651, 1276
AluI AGCT 5 cut(s) 18, 233, 426, 651, 1276
Alw26I GTCTC 5 cut(s) 126, 341, 421, 1225, 1256
AlwI GGATC 2 cut(s) 980, 1088
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 3 cut(s) 29, 48, 228
AoxI GGCC 2 cut(s) 299, 1344
ApeKI GCWGC 8 cut(s) 144, 314, 317, 402, 635, 868, 941, 959
ApoI RAATTY 1 cut(s) 927
Asp700I GAANNNNTTC 2 cut(s) 159, 723
AspLEI GCGC 1 cut(s) 1124
AspS9I GGNCC 5 cut(s) 45, 188, 300, 1037, 1344
AsuC2I CCSGG 2 cut(s) 277, 1258
AsuHPI GGTGA 3 cut(s) 83, 165, 698
AvaI CYCGRG 3 cut(s) 29, 48, 228
AvaII GGWCC 3 cut(s) 45, 188, 1037
BaeGI GKGCMC 1 cut(s) 765
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 558, 615
BbvI GCAGC 8 cut(s) 156, 301, 304, 389, 622, 855, 928, 946
BccI CCATC 3 cut(s) 1148, 1327, 1331
BciT130I CCWGG 3 cut(s) 769, 816, 1236
BclI TGATCA 1 cut(s) 1270
BcnI CCSGG 2 cut(s) 277, 1258
BcoDI GTCTC 5 cut(s) 126, 341, 421, 1225, 1256
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 3 cut(s) 540, 666, 1061
BfmI CTRYAG 3 cut(s) 19, 942, 1326
BglI GCCNNNNNGGC 1 cut(s) 88
Bme1390I CCNGG 5 cut(s) 277, 769, 816, 1236, 1258
Bme18I GGWCC 3 cut(s) 45, 188, 1037
BmeT110I CYCGRG 3 cut(s) 29, 48, 228
BmgT120I GGNCC 5 cut(s) 45, 188, 300, 1037, 1344
BmiI GGNNCC 4 cut(s) 46, 47, 1039, 1138
BmrFI CCNGG 5 cut(s) 277, 769, 816, 1236, 1258
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 2 cut(s) 850, 1038
BmuI ACTGGG 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 558, 615
BplI GAGNNNNNCTC 4 cut(s) 120, 152, 338, 370
BpmI CTGGAG 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 2 cut(s) 277, 1258
BsaBI GATNNNNATC 1 cut(s) 984
BsaI GGTCTC 2 cut(s) 126, 1256
BsaJI CCNNGG 4 cut(s) 10, 83, 1235, 1354
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 1379
Bse1I ACTGG 3 cut(s) 485, 704, 838
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 3 cut(s) 769, 816, 1236
BseDI CCNNGG 4 cut(s) 10, 83, 1235, 1354
BseGI GGATG 3 cut(s) 727, 841, 1342
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 728, 1158
BseNI ACTGG 3 cut(s) 485, 704, 838
BseRI GAGGAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 8 cut(s) 156, 301, 304, 389, 622, 855, 928, 946
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 990
BshFI GGCC 2 cut(s) 301, 1346
BsiHKCI CYCGRG 3 cut(s) 29, 48, 228
BsiSI CCGG 3 cut(s) 277, 1257, 1380
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 5 cut(s) 126, 341, 421, 1225, 1256
BsmBI CGTCTC 1 cut(s) 1225
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 2 cut(s) 301, 1346
Bso31I GGTCTC 2 cut(s) 126, 1256
BsoBI CYCGRG 3 cut(s) 29, 48, 228
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
Bsp19I CCATGG 1 cut(s) 1354
BspACI CCGC 8 cut(s) 7, 80, 165, 186, 292, 360, 765, 1133
BspANI GGCC 2 cut(s) 301, 1346
BspCNI CTCAG 2 cut(s) 727, 1157
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 4 cut(s) 46, 47, 1039, 1138
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 2 cut(s) 980, 1088
BspTNI GGTCTC 2 cut(s) 126, 1256
BsrBI CCGCTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 1379
BsrI ACTGG 3 cut(s) 485, 704, 838
BssAI RCCGGY 1 cut(s) 1379
BssECI CCNNGG 4 cut(s) 10, 83, 1235, 1354
BssMI GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 83, 1354
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 3 cut(s) 769, 816, 1236
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 941
BstC8I GCNNGC 2 cut(s) 765, 1381
BstDEI CTNAG 2 cut(s) 714, 1144
BstDSI CCRYGG 1 cut(s) 1354
BstF5I GGATG 3 cut(s) 727, 841, 1342
BstHHI GCGC 1 cut(s) 1124
BstKTI GATC 5 cut(s) 988, 1096, 1213, 1218, 1273
BstMAI GTCTC 5 cut(s) 126, 341, 421, 1225, 1256
BstMBI GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 15, 88, 941, 1130
BstNI CCWGG 3 cut(s) 769, 816, 1236
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 5 cut(s) 275, 767, 814, 1234, 1256
BstSFI CTRYAG 3 cut(s) 19, 942, 1326
BstSLI GKGCMC 1 cut(s) 765
BstV1I GCAGC 8 cut(s) 156, 301, 304, 389, 622, 855, 928, 946
BstV2I GAAGAC 2 cut(s) 558, 615
BstX2I RGATCY 2 cut(s) 985, 1093
BstYI RGATCY 2 cut(s) 985, 1093
BsuRI GGCC 2 cut(s) 301, 1346
BtgI CCRYGG 1 cut(s) 1354
BtsCI GGATG 3 cut(s) 727, 841, 1342
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 765, 1381
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 1124
Cfr10I RCCGGY 1 cut(s) 1379
Cfr13I GGNCC 5 cut(s) 45, 188, 300, 1037, 1344
Csp6I GTAC 3 cut(s) 694, 1159, 1166
CviAII CATG 5 cut(s) 413, 494, 875, 1098, 1355
CviQI GTAC 3 cut(s) 694, 1159, 1166
DdeI CTNAG 2 cut(s) 714, 1144
DpnI GATC 5 cut(s) 987, 1095, 1212, 1217, 1272
DpnII GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
DraI TTTAAA 1 cut(s) 1188
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 83, 1354
Eco31I GGTCTC 2 cut(s) 126, 1256
Eco47I GGWCC 3 cut(s) 45, 188, 1037
Eco57I CTGAAG 3 cut(s) 327, 621, 765
Eco88I CYCGRG 3 cut(s) 29, 48, 228
EcoO109I RGGNCCY 2 cut(s) 45, 1037
EcoRI GAATTC 1 cut(s) 927
EcoRII CCWGG 3 cut(s) 767, 814, 1234
EcoT14I CCWWGG 2 cut(s) 83, 1354
ErhI CCWWGG 2 cut(s) 83, 1354
Esp3I CGTCTC 1 cut(s) 1225
FaeI CATG 5 cut(s) 416, 497, 878, 1101, 1358
FaqI GGGAC 1 cut(s) 58
FatI CATG 5 cut(s) 412, 493, 874, 1097, 1354
FauI CCCGC 3 cut(s) 172, 772, 1126
FbaI TGATCA 1 cut(s) 1270
FokI GGATG 3 cut(s) 714, 828, 1349
FspBI CTAG 3 cut(s) 540, 666, 1061
GlaI GCGC 1 cut(s) 1123
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 2 cut(s) 301, 1346
HapII CCGG 3 cut(s) 277, 1257, 1380
HhaI GCGC 1 cut(s) 1124
Hin1II CATG 5 cut(s) 416, 497, 878, 1101, 1358
Hin6I GCGC 1 cut(s) 1122
HinP1I GCGC 1 cut(s) 1122
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 8 cut(s) 349, 569, 641, 719, 750, 785, 811, 1261
HpaII CCGG 3 cut(s) 277, 1257, 1380
HphI GGTGA 3 cut(s) 83, 165, 698
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 9 cut(s) 346, 574, 810, 974, 1026, 1068, 1147, 1215, 1270
Hpy188III TCNNGA 6 cut(s) 494, 506, 599, 716, 754, 924
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 7 cut(s) 96, 118, 170, 445, 596, 740, 1307
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 88, 941, 1130
HpyF3I CTNAG 2 cut(s) 714, 1144
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 5 cut(s) 416, 497, 878, 1101, 1358
HspAI GCGC 1 cut(s) 1122
KflI GGGWCCC 1 cut(s) 45
KroI GCCGGC 1 cut(s) 1379
KroNI GCCGGC 1 cut(s) 1381
Ksp22I TGATCA 1 cut(s) 1270
Kzo9I GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
LmnI GCTCC 2 cut(s) 1119, 1136
Lsp1109I GCAGC 8 cut(s) 156, 301, 304, 389, 622, 855, 928, 946
LweI GCATC 2 cut(s) 850, 1038
MaeI CTAG 3 cut(s) 540, 666, 1061
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 241
MalI GATC 5 cut(s) 987, 1095, 1212, 1217, 1272
MbiI CCGCTC 1 cut(s) 294
MboI GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
MboII GAAGA 8 cut(s) 259, 327, 330, 333, 432, 563, 620, 1124
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 2 cut(s) 985, 1093
MhlI GDGCHC 1 cut(s) 765
MlyI GAGTC 2 cut(s) 343, 744
MmeI TCCRAC 1 cut(s) 952
MroNI GCCGGC 1 cut(s) 1379
MroXI GAANNNNTTC 2 cut(s) 159, 723
MseI TTAA 3 cut(s) 678, 948, 1187
MslI CAYNNNNRTG 1 cut(s) 1014
MspI CCGG 3 cut(s) 277, 1257, 1380
MspR9I CCNGG 5 cut(s) 277, 769, 816, 1236, 1258
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 3 cut(s) 769, 816, 1236
MwoI GCNNNNNNNGC 4 cut(s) 15, 88, 941, 1130
NaeI GCCGGC 1 cut(s) 1381
NciI CCSGG 2 cut(s) 277, 1258
NcoI CCATGG 1 cut(s) 1354
NdeII GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
NgoMIV GCCGGC 1 cut(s) 1379
NlaIII CATG 5 cut(s) 416, 497, 878, 1101, 1358
NlaIV GGNNCC 4 cut(s) 46, 47, 1039, 1138
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 228
PagI TCATGA 1 cut(s) 493
PciI ACATGT 1 cut(s) 412
PctI GAATGC 1 cut(s) 1021
PdiI GCCGGC 1 cut(s) 1381
PdmI GAANNNNTTC 2 cut(s) 159, 723
PfeI GAWTC 6 cut(s) 569, 641, 719, 785, 811, 1261
PfoI TCCNGGA 2 cut(s) 814, 1256
PleI GAGTC 2 cut(s) 343, 744
PpsI GAGTC 2 cut(s) 343, 744
PpuMI RGGWCCY 2 cut(s) 45, 1037
PscI ACATGT 1 cut(s) 412
Psp5II RGGWCCY 2 cut(s) 45, 1037
Psp6I CCWGG 3 cut(s) 767, 814, 1234
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 767, 814, 1234
PspN4I GGNNCC 4 cut(s) 46, 47, 1039, 1138
PspPI GGNCC 5 cut(s) 45, 188, 300, 1037, 1344
PspPPI RGGWCCY 2 cut(s) 45, 1037
PspXI VCTCGAGB 1 cut(s) 228
PstI CTGCAG 1 cut(s) 946
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 2 cut(s) 985, 1093
RsaI GTAC 3 cut(s) 695, 1160, 1167
RsaNI GTAC 3 cut(s) 694, 1159, 1166
RseI CAYNNNNRTG 1 cut(s) 1014
SaqAI TTAA 3 cut(s) 678, 948, 1187
Sau3AI GATC 5 cut(s) 985, 1093, 1210, 1215, 1270
Sau96I GGNCC 5 cut(s) 45, 188, 300, 1037, 1344
SchI GAGTC 2 cut(s) 343, 744
ScrFI CCNGG 5 cut(s) 277, 769, 816, 1236, 1258
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 2 cut(s) 850, 1038
SfcI CTRYAG 3 cut(s) 19, 942, 1326
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 45, 188, 1037
SlaI CTCGAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 2 cut(s) 197, 228
SmoI CTYRAG 2 cut(s) 197, 228
SpeI ACTAGT 1 cut(s) 539
SsiI CCGC 8 cut(s) 7, 80, 165, 186, 292, 360, 765, 1133
SspI AATATT 1 cut(s) 473
SspMI CTAG 3 cut(s) 540, 666, 1061
StyD4I CCNGG 5 cut(s) 275, 767, 814, 1234, 1256
StyI CCWWGG 2 cut(s) 83, 1354
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 615
TaqI TCGA 2 cut(s) 229, 1322
TatI WGTACW 1 cut(s) 1165
TauI GCSGC 2 cut(s) 9, 362
TfiI GAWTC 6 cut(s) 569, 641, 719, 785, 811, 1261
Tru1I TTAA 3 cut(s) 678, 948, 1187
Tru9I TTAA 3 cut(s) 678, 948, 1187
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 8 cut(s) 144, 314, 317, 402, 635, 868, 941, 959
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 5 cut(s) 90, 564, 687, 716, 863
TspGWI ACGGA 1 cut(s) 1132
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 45, 188, 1037
XapI RAATTY 1 cut(s) 927
XceI RCATGY 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 228
XmnI GAANNNNTTC 2 cut(s) 159, 723
XspI CTAG 3 cut(s) 540, 666, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.