MD11G1252500.v1.1

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014127
Physical Location & Seq
Forward (+)
36485842 .. 36489464
3623 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1252500.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGTCAGGCGGATTGCTCAGACACCTTGCGTACAATCTCACCTCCCGCTGCTTCACCACCGTCTCTCGCCCTCTCGCTCCCCCATTCTCCTCCCGCTTCTTCCCAAACCCCAAACCCAGACACCTCTCCCGGCCCAATTCCCTCGCCGCCGCAAATATTTCCACTGCTTCTTCGGACCCTCCCACTCCCTCCGCCGAGCCCAACGAGCCCTTCGCTTCGCCTTTCCTCTCCGTTCAAATCCGCTGCCAAAAACATGTCGCTGATATACTTTCAGAAGCGCTGTTATGTTTCGGTGCAAGTTCTACAAGTATTGACGAAGAAGATGACAATGACGGAAAGGATGAGATCTGCATTGATTCCATATTTCCTGAAGGCGAAGATGTAAAAACCTGCATTTCACGTGCTGCAGATTCCGTAAGTTTGAAAGAGATGCCTAGTTATGAAGTTAAGATGGGTGAGCAGTTCGACTGGATAACGAAAACTCAGGAATCATTCCATCCTGTTGAAGTTACTGAAGGACTTTGGATTGTGCCCGAGTGGAGAATTCCCCCGGATGCCCAAGCAACTAATATAATTCTAAATCCTGGATTGGCATTCGGAACCGGGGAGCATGCTACTACCAAGTTATGTCTATTGCTGCTCCGTAGATTGATAAAGGGAAGAGAATTATTCTTGGACTATGGCACAGGTTCTGGAATTCTCGCAATCGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCCCAAGCAATTACTTCGGCGCGGCAGAATGCTGCTCTGAACAACATAGGACCTGAAAAGATGCAATTGCACCTGCTCCCCAGCAAAACTAGCTCTACCTCGAGAGATTCATGCGGAGGTGTGGAAGATCGGAGCTCATCTGGAGTGGAATCCATCTTAGAAACAAACAAGTACGACGTGGTCATCGCAAATATACTTTTGAATCCCCTATTAGATTTGGCGGATCATATCGTCTCTTATGCAAAGCCTGGGGCAGTCGTCGGTCTCTCTGGCATTATCTCTGAGCAGCTTCCACATATCGTAGAGCGGTATTCACAGTTATTAGAAGACGTATCGATTACTGAGATGGATGATTGGGCCTGTGTTCATGGAACAAAGAAGCAGAATCTTTCTGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

386

Amino Acids

41.7

Weight (kDa)

4.95

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 75 - 379 7.2e-77 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_23 PF13489 204 - 341 9.8e-06 Methyltransferase domain
Methyltransf_31 PF13847 224 - 322 1.8e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 837
Acc36I ACCTGC 2 cut(s) 398, 837
AccBSI CCGCTC 1 cut(s) 1063
AccII CGCG 1 cut(s) 778
AclWI GGATC 2 cut(s) 749, 987
AcsI RAATTY 2 cut(s) 543, 696
AcuI CTGAAG 2 cut(s) 390, 534
AcvI CACGTG 1 cut(s) 401
AfaI GTAC 2 cut(s) 32, 929
AfeI AGCGCT 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 236, 424, 506, 958
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 583, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 4 cut(s) 849, 891, 1045, 1155
AluI AGCT 4 cut(s) 849, 891, 1045, 1155
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 3 cut(s) 67, 994, 1025
AlwI GGATC 2 cut(s) 749, 987
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 533, 856
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 2 cut(s) 131, 1113
ApeKI GCWGC 8 cut(s) 48, 243, 404, 637, 710, 728, 788, 1042
ApoI RAATTY 2 cut(s) 543, 696
AspLEI GCGC 2 cut(s) 280, 778
AspS9I GGNCC 4 cut(s) 132, 175, 806, 1113
AsuC2I CCSGG 3 cut(s) 130, 551, 604
AsuHPI GGTGA 3 cut(s) 31, 46, 467
AvaI CYCGRG 2 cut(s) 533, 856
AvaII GGWCC 2 cut(s) 175, 806
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 3 cut(s) 201, 210, 893
BbrPI CACGTG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 1089
Bbv12I GWGCWC 1 cut(s) 893
BbvI GCAGC 8 cut(s) 35, 230, 391, 624, 697, 715, 775, 1054
BccI CCATC 4 cut(s) 445, 504, 917, 1096
BcgI CGANNNNNNTGC 2 cut(s) 753, 787
BciT130I CCWGG 2 cut(s) 585, 1005
BcnI CCSGG 3 cut(s) 130, 551, 604
BcoDI GTCTC 3 cut(s) 67, 994, 1025
BfaI CTAG 2 cut(s) 435, 846
BfmI CTRYAG 2 cut(s) 405, 711
BfoI RGCGCY 1 cut(s) 281
BfuAI ACCTGC 2 cut(s) 398, 837
BglII AGATCT 1 cut(s) 345
Bme1390I CCNGG 5 cut(s) 130, 551, 585, 604, 1005
Bme18I GGWCC 2 cut(s) 175, 806
BmeT110I CYCGRG 2 cut(s) 533, 856
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 4 cut(s) 132, 175, 806, 1113
BmiI GGNNCC 2 cut(s) 177, 601
BmrFI CCNGG 5 cut(s) 130, 551, 585, 604, 1005
BmsI GCATC 3 cut(s) 420, 544, 807
BpiI GAAGAC 1 cut(s) 1089
BpmI CTGGAG 1 cut(s) 918
BpuMI CCSGG 3 cut(s) 130, 551, 604
Bsa29I ATCGAT 1 cut(s) 1091
BsaAI YACGTR 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 3 cut(s) 549, 603, 1004
Bse1I ACTGG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 2 cut(s) 585, 1005
BseCI ATCGAT 1 cut(s) 1091
BseDI CCNNGG 3 cut(s) 549, 603, 1004
BseGI GGATG 4 cut(s) 346, 496, 559, 1111
BseJI GATNNNNATC 1 cut(s) 753
BseMII CTCAG 4 cut(s) 31, 497, 1029, 1089
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 8 cut(s) 35, 230, 391, 624, 697, 715, 775, 1054
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 2 cut(s) 133, 1115
BshVI ATCGAT 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 893
BsiHKCI CYCGRG 2 cut(s) 533, 856
BsiSI CCGG 3 cut(s) 130, 551, 603
BsmAI GTCTC 3 cut(s) 67, 994, 1025
BsmBI CGTCTC 2 cut(s) 67, 994
BsmI GAATGC 2 cut(s) 593, 790
BsnI GGCC 2 cut(s) 133, 1115
Bso31I GGTCTC 1 cut(s) 1025
BsoBI CYCGRG 2 cut(s) 533, 856
Bsp1286I GDGCHC 4 cut(s) 201, 210, 534, 893
Bsp143I GATC 4 cut(s) 345, 754, 883, 979
BspANI GGCC 2 cut(s) 133, 1115
BspCNI CTCAG 4 cut(s) 30, 496, 1030, 1090
BspDI ATCGAT 1 cut(s) 1091
BspFNI CGCG 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 177, 601
BspMAI CTGCAG 2 cut(s) 409, 715
BspMI ACCTGC 2 cut(s) 398, 837
BspPI GGATC 2 cut(s) 749, 987
BspTNI GGTCTC 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 1063
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 3 cut(s) 549, 603, 1004
BssMI GATC 4 cut(s) 345, 754, 883, 979
Bst2UI CCWGG 2 cut(s) 585, 1005
Bst4CI ACNGT 2 cut(s) 61, 1074
Bst6I CTCTTC 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 5 cut(s) 17, 483, 913, 1038, 1098
BstF5I GGATG 4 cut(s) 346, 496, 559, 1111
BstFNI CGCG 1 cut(s) 778
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 778
BstKTI GATC 4 cut(s) 348, 757, 886, 982
BstMAI GTCTC 3 cut(s) 67, 994, 1025
BstMBI GATC 4 cut(s) 345, 754, 883, 979
BstMWI GCNNNNNNNGC 3 cut(s) 205, 710, 846
BstNI CCWGG 2 cut(s) 585, 1005
BstNSI RCATGY 2 cut(s) 257, 614
BstSCI CCNGG 5 cut(s) 128, 549, 583, 602, 1003
BstSFI CTRYAG 2 cut(s) 405, 711
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 8 cut(s) 35, 230, 391, 624, 697, 715, 775, 1054
BstV2I GAAGAC 1 cut(s) 1089
BstX2I RGATCY 2 cut(s) 345, 754
BstYI RGATCY 2 cut(s) 345, 754
Bsu15I ATCGAT 1 cut(s) 1091
BsuRI GGCC 2 cut(s) 133, 1115
BsuTUI ATCGAT 1 cut(s) 1091
BtgZI GCGATG 1 cut(s) 925
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 4 cut(s) 346, 496, 559, 1111
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 2 cut(s) 398, 837
Cac8I GCNNGC 1 cut(s) 612
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 280, 778
Cfr13I GGNCC 4 cut(s) 132, 175, 806, 1113
ClaI ATCGAT 1 cut(s) 1091
Csp6I GTAC 2 cut(s) 31, 928
CviAII CATG 4 cut(s) 254, 611, 867, 1124
CviJI RGCY 9 cut(s) 133, 199, 208, 849, 891, 1003, 1045, 1115, 1155
CviKI_1 RGCY 9 cut(s) 133, 199, 208, 849, 891, 1003, 1045, 1115, 1155
CviQI GTAC 2 cut(s) 31, 928
DdeI CTNAG 5 cut(s) 17, 483, 913, 1038, 1098
DpnI GATC 4 cut(s) 347, 756, 885, 981
DpnII GATC 4 cut(s) 345, 754, 883, 979
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
EciI GGCGGA 3 cut(s) 24, 181, 992
Ecl136II GAGCTC 1 cut(s) 891
Eco24I GRGCYC 3 cut(s) 201, 210, 893
Eco31I GGTCTC 1 cut(s) 1025
Eco47I GGWCC 2 cut(s) 175, 806
Eco47III AGCGCT 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 891
Eco57I CTGAAG 2 cut(s) 390, 534
Eco72I CACGTG 1 cut(s) 401
Eco88I CYCGRG 2 cut(s) 533, 856
EcoICRI GAGCTC 1 cut(s) 891
EcoO109I RGGNCCY 1 cut(s) 806
EcoRI GAATTC 2 cut(s) 543, 696
EcoRII CCWGG 2 cut(s) 583, 1003
EcoT38I GRGCYC 3 cut(s) 201, 210, 893
Esp3I CGTCTC 2 cut(s) 67, 994
FaeI CATG 4 cut(s) 257, 614, 870, 1127
FatI CATG 4 cut(s) 253, 610, 866, 1123
FauI CCCGC 2 cut(s) 53, 101
FokI GGATG 4 cut(s) 353, 483, 566, 1118
FriOI GRGCYC 3 cut(s) 201, 210, 893
FspBI CTAG 2 cut(s) 435, 846
GlaI GCGC 2 cut(s) 279, 777
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 133, 1115
HapII CCGG 3 cut(s) 130, 551, 603
HhaI GCGC 2 cut(s) 280, 778
Hin1II CATG 4 cut(s) 257, 614, 870, 1127
Hin6I GCGC 2 cut(s) 278, 776
HinP1I GCGC 2 cut(s) 278, 776
HinfI GANTC 7 cut(s) 356, 410, 488, 863, 905, 958, 1141
HpaII CCGG 3 cut(s) 130, 551, 603
HphI GGTGA 3 cut(s) 31, 46, 467
Hpy188I TCNGA 9 cut(s) 20, 175, 274, 599, 743, 795, 888, 1039, 1150
Hpy188III TCNNGA 5 cut(s) 368, 485, 693, 858, 897
Hpy99I CGWCG 2 cut(s) 935, 1019
HpyAV CCTTC 3 cut(s) 220, 365, 509
HpyCH4III ACNGT 2 cut(s) 61, 1074
HpyCH4IV ACGT 3 cut(s) 400, 933, 1086
HpyCH4V TGCA 8 cut(s) 296, 351, 393, 407, 713, 820, 826, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 710, 846
HpyF3I CTNAG 5 cut(s) 17, 483, 913, 1038, 1098
HpySE526I ACGT 3 cut(s) 400, 933, 1086
Hsp92II CATG 4 cut(s) 257, 614, 870, 1127
HspAI GCGC 2 cut(s) 278, 776
Kzo9I GATC 4 cut(s) 345, 754, 883, 979
LmnI GCTCC 5 cut(s) 82, 607, 645, 837, 888
Lsp1109I GCAGC 8 cut(s) 35, 230, 391, 624, 697, 715, 775, 1054
LweI GCATC 3 cut(s) 420, 544, 807
MaeI CTAG 2 cut(s) 435, 846
MaeII ACGT 3 cut(s) 400, 933, 1086
MaeIII GTNAC 1 cut(s) 508
MalI GATC 4 cut(s) 347, 756, 885, 981
MbiI CCGCTC 1 cut(s) 1063
MboI GATC 4 cut(s) 345, 754, 883, 979
MboII GAAGA 8 cut(s) 91, 162, 329, 332, 389, 672, 893, 1094
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 2 cut(s) 345, 754
MhlI GDGCHC 4 cut(s) 201, 210, 534, 893
MluCI AATT 8 cut(s) 136, 543, 573, 665, 696, 744, 765, 821
MmeI TCCRAC 1 cut(s) 721
MseI TTAA 2 cut(s) 447, 717
MspA1I CMGCKG 2 cut(s) 48, 243
MspI CCGG 3 cut(s) 130, 551, 603
MspR9I CCNGG 5 cut(s) 130, 551, 585, 604, 1005
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 2 cut(s) 593, 790
MvaI CCWGG 2 cut(s) 585, 1005
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 3 cut(s) 205, 710, 846
NciI CCSGG 3 cut(s) 130, 551, 604
NdeII GATC 4 cut(s) 345, 754, 883, 979
NlaIII CATG 4 cut(s) 257, 614, 870, 1127
NlaIV GGNNCC 2 cut(s) 177, 601
NmeAIII GCCGAG 1 cut(s) 220
NspI RCATGY 2 cut(s) 257, 614
PaeI GCATGC 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 837
PciI ACATGT 1 cut(s) 253
PctI GAATGC 2 cut(s) 593, 790
PfeI GAWTC 7 cut(s) 356, 410, 488, 863, 905, 958, 1141
PflFI GACNNNGTC 1 cut(s) 935
PfoI TCCNGGA 1 cut(s) 583
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 401
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 893
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 583, 1003
PspCI CACGTG 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 2 cut(s) 583, 1003
PspN4I GGNNCC 2 cut(s) 177, 601
PspPI GGNCC 4 cut(s) 132, 175, 806, 1113
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 2 cut(s) 409, 715
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 2 cut(s) 345, 754
PsyI GACNNNGTC 1 cut(s) 935
RsaI GTAC 2 cut(s) 32, 929
RsaNI GTAC 2 cut(s) 31, 928
SacI GAGCTC 1 cut(s) 893
SaqAI TTAA 2 cut(s) 447, 717
Sau3AI GATC 4 cut(s) 345, 754, 883, 979
Sau96I GGNCC 4 cut(s) 132, 175, 806, 1113
ScrFI CCNGG 5 cut(s) 130, 551, 585, 604, 1005
SduI GDGCHC 4 cut(s) 201, 210, 534, 893
SfaNI GCATC 3 cut(s) 420, 544, 807
SfcI CTRYAG 2 cut(s) 405, 711
Sfr274I CTCGAG 1 cut(s) 856
SinI GGWCC 2 cut(s) 175, 806
SlaI CTCGAG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 856
SmoI CTYRAG 1 cut(s) 856
SphI GCATGC 1 cut(s) 614
Sse9I AATT 8 cut(s) 136, 543, 573, 665, 696, 744, 765, 821
SspI AATATT 1 cut(s) 157
SspMI CTAG 2 cut(s) 435, 846
SstI GAGCTC 1 cut(s) 893
StyD4I CCNGG 5 cut(s) 128, 549, 583, 602, 1003
TaaI ACNGT 2 cut(s) 61, 1074
TaiI ACGT 3 cut(s) 403, 936, 1089
TaqI TCGA 3 cut(s) 465, 857, 1091
TaqII GACCGA 1 cut(s) 1007
TasI AATT 8 cut(s) 136, 543, 573, 665, 696, 744, 765, 821
TauI GCSGC 3 cut(s) 149, 152, 781
TfiI GAWTC 7 cut(s) 356, 410, 488, 863, 905, 958, 1141
Tru1I TTAA 2 cut(s) 447, 717
Tru9I TTAA 2 cut(s) 447, 717
TscAI CASTG 1 cut(s) 169
TseI GCWGC 8 cut(s) 48, 243, 404, 637, 710, 728, 788, 1042
TspDTI ATGAA 3 cut(s) 456, 855, 1112
TspGWI ACGGA 4 cut(s) 220, 348, 403, 632
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 935
VpaK11BI GGWCC 2 cut(s) 175, 806
XapI RAATTY 2 cut(s) 543, 696
XceI RCATGY 2 cut(s) 257, 614
XhoI CTCGAG 1 cut(s) 856
XspI CTAG 2 cut(s) 435, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.