Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014127

Physical Location & Seq

Genomic Coordinates Reverse (-)

26989625 .. 26992885

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGACGGTGGCTATGAACAGCAACCTAAGGAACTGCGAAGGTTTGAAGCGTCCTTATCGAGATGCGCATTTGTTGCCTTCAACATCTGCAGCTCCACTCACTTGTGAATTCTTTTCACTTGAATATTGGAACTGGGTTTATGCTCATGATATGCTGCAAGAAGCTTTGTTATGTTTTGGTGCAAGTTCTACTAGTGTTGATGAAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGCGAAGATGTAGATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTACGATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTTATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCAGCCTGGAAAACTCCCCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAGGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCTGAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCGCATTTGTAGTGGAAGCCATCTCAGAAACAGACGAGTACGATGTACTACTTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCGCTGATCAGCTTCCATATATTATAGAGCGATATTCACAGTTCTTGGAAGGTGTATCAACTACCGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCTGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PrmA

Protein Analysis

348

Amino Acids

37.96

Weight (kDa)

4.2

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	53 - 341	1.3e-71	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	183 - 230	6e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53920
fragaria_vesca	FvH4_3g19490
malus_domestica	MD11G1252500.v1.1
prunus_persica	Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032751
rosa_laevigata	RLG00000033424
rosa_multiflora	Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii	Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana	Rw5G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	66
AclWI	GGATC	2 cut(s)	635, 743
AcsI	RAATTY	2 cut(s)	107, 582
AcuI	CTGAAG	2 cut(s)	276, 420
AfaI	GTAC	3 cut(s)	350, 815, 822
AgsI	TTSAA	5 cut(s)	46, 81, 122, 310, 392
AhlI	ACTAGT	1 cut(s)	191
AjnI	CCWGG	3 cut(s)	422, 469, 889
AluBI	AGCT	4 cut(s)	92, 164, 306, 931
AluI	AGCT	4 cut(s)	92, 164, 306, 931
Alw26I	GTCTC	2 cut(s)	880, 911
AlwI	GGATC	2 cut(s)	635, 743
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	999
ApeKI	GCWGC	6 cut(s)	89, 154, 290, 523, 596, 614
ApoI	RAATTY	2 cut(s)	107, 582
AspLEI	GCGC	2 cut(s)	67, 779
AspS9I	GGNCC	2 cut(s)	692, 999
AsuC2I	CCSGG	1 cut(s)	913
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	101, 141, 277, 510, 583, 601
BccI	CCATC	3 cut(s)	803, 982, 986
BciT130I	CCWGG	3 cut(s)	424, 471, 891
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	880, 911
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	3 cut(s)	192, 321, 716
BfmI	CTRYAG	2 cut(s)	87, 597
BisI	GCNGC	6 cut(s)	90, 155, 291, 524, 597, 615
BlsI	GCNGC	6 cut(s)	91, 156, 292, 525, 598, 616
Bme1390I	CCNGG	4 cut(s)	424, 471, 891, 913
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	692, 999
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	4 cut(s)	424, 471, 891, 913
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	4 cut(s)	52, 430, 505, 693
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	913
BsaBI	GATNNNNATC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	890, 1009
BsaWI	WCCGGW	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	137, 359
Bse21I	CCTNAGG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	424, 471, 891
BseDI	CCNNGG	2 cut(s)	890, 1009
BseGI	GGATG	2 cut(s)	496, 997
BseJI	GATNNNNATC	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	383, 813
BseNI	ACTGG	2 cut(s)	137, 359
BseXI	GCAGC	6 cut(s)	101, 141, 277, 510, 583, 601
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	1001
BsiSI	CCGG	2 cut(s)	489, 912
BsmAI	GTCTC	2 cut(s)	880, 911
BsmBI	CGTCTC	1 cut(s)	880
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	1001
Bso31I	GGTCTC	1 cut(s)	911
Bsp143I	GATC	5 cut(s)	640, 748, 865, 870, 925
Bsp19I	CCATGG	1 cut(s)	1009
BspANI	GGCC	1 cut(s)	1001
BspCNI	CTCAG	2 cut(s)	382, 812
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	2 cut(s)	91, 601
BspPI	GGATC	2 cut(s)	635, 743
BspTNI	GGTCTC	1 cut(s)	911
BsrI	ACTGG	2 cut(s)	137, 359
BssECI	CCNNGG	2 cut(s)	890, 1009
BssMI	GATC	5 cut(s)	640, 748, 865, 870, 925
BssT1I	CCWWGG	1 cut(s)	1009
Bst2UI	CCWGG	3 cut(s)	424, 471, 891
Bst4CI	ACNGT	2 cut(s)	7, 960
BstAPI	GCANNNNNTGC	2 cut(s)	73, 596
BstC8I	GCNNGC	2 cut(s)	420, 1036
BstDEI	CTNAG	3 cut(s)	26, 369, 799
BstDSI	CCRYGG	1 cut(s)	1009
BstF5I	GGATG	2 cut(s)	496, 997
BstHHI	GCGC	2 cut(s)	67, 779
BstKTI	GATC	5 cut(s)	643, 751, 868, 873, 928
BstMAI	GTCTC	2 cut(s)	880, 911
BstMBI	GATC	5 cut(s)	640, 748, 865, 870, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 596
BstNI	CCWGG	3 cut(s)	424, 471, 891
BstSCI	CCNGG	4 cut(s)	422, 469, 889, 911
BstSFI	CTRYAG	2 cut(s)	87, 597
BstV1I	GCAGC	6 cut(s)	101, 141, 277, 510, 583, 601
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	640, 748
BstYI	RGATCY	2 cut(s)	640, 748
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	1001
BtgI	CCRYGG	1 cut(s)	1009
BtsCI	GGATG	2 cut(s)	496, 997
Cac8I	GCNNGC	2 cut(s)	420, 1036
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	67, 779
Cfr13I	GGNCC	2 cut(s)	692, 999
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	349, 814, 821
CviAII	CATG	4 cut(s)	146, 530, 753, 1010
CviQI	GTAC	3 cut(s)	349, 814, 821
DdeI	CTNAG	3 cut(s)	26, 369, 799
DpnI	GATC	5 cut(s)	642, 750, 867, 872, 927
DpnII	GATC	5 cut(s)	640, 748, 865, 870, 925
DraI	TTTAAA	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	1009
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	276, 420
Eco81I	CCTNAGG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	692
EcoRI	GAATTC	2 cut(s)	107, 582
EcoRII	CCWGG	3 cut(s)	422, 469, 889
EcoT14I	CCWWGG	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	1009
Esp3I	CGTCTC	1 cut(s)	880
FaeI	CATG	4 cut(s)	149, 533, 756, 1013
FatI	CATG	4 cut(s)	145, 529, 752, 1009
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	6 cut(s)	90, 155, 291, 524, 597, 615
FokI	GGATG	2 cut(s)	483, 1004
Fsp4HI	GCNGC	6 cut(s)	90, 155, 291, 524, 597, 615
FspAI	RTGCGCAY	1 cut(s)	66
FspBI	CTAG	3 cut(s)	192, 321, 716
FspI	TGCGCA	1 cut(s)	66
GlaI	GCGC	2 cut(s)	66, 778
GluI	GCNGC	6 cut(s)	90, 155, 291, 524, 597, 615
HaeIII	GGCC	1 cut(s)	1001
HapII	CCGG	2 cut(s)	489, 912
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	67, 779
Hin1II	CATG	4 cut(s)	149, 533, 756, 1013
Hin6I	GCGC	2 cut(s)	65, 777
HinP1I	GCGC	2 cut(s)	65, 777
HindIII	AAGCTT	2 cut(s)	162, 304
HinfI	GANTC	6 cut(s)	221, 296, 374, 405, 466, 916
HpaII	CCGG	2 cut(s)	489, 912
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	7 cut(s)	226, 465, 629, 681, 723, 802, 870
Hpy188III	TCNNGA	6 cut(s)	59, 146, 254, 371, 409, 579
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	5 cut(s)	32, 87, 251, 395, 962
HpyCH4III	ACNGT	2 cut(s)	7, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 596
HpyF3I	CTNAG	3 cut(s)	26, 369, 799
Hsp92II	CATG	4 cut(s)	149, 533, 756, 1013
HspAI	GCGC	2 cut(s)	65, 777
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	640, 748, 865, 870, 925
LmnI	GCTCC	2 cut(s)	97, 774
Lsp1109I	GCAGC	6 cut(s)	101, 141, 277, 510, 583, 601
LweI	GCATC	4 cut(s)	52, 430, 505, 693
MaeI	CTAG	3 cut(s)	192, 321, 716
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	642, 750, 867, 872, 927
MboI	GATC	5 cut(s)	640, 748, 865, 870, 925
MboII	GAAGA	3 cut(s)	215, 275, 779
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	640, 748
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	249, 607
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	2 cut(s)	603, 842
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	2 cut(s)	489, 912
MspR9I	CCNGG	4 cut(s)	424, 471, 891, 913
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	3 cut(s)	424, 471, 891
MwoI	GCNNNNNNNGC	2 cut(s)	73, 596
NciI	CCSGG	1 cut(s)	913
NcoI	CCATGG	1 cut(s)	1009
NdeII	GATC	5 cut(s)	640, 748, 865, 870, 925
NlaIII	CATG	4 cut(s)	149, 533, 756, 1013
NlaIV	GGNNCC	1 cut(s)	487
NsbI	TGCGCA	1 cut(s)	66
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	5 cut(s)	221, 296, 374, 466, 916
PfoI	TCCNGGA	2 cut(s)	469, 911
PkrI	GCNGC	6 cut(s)	91, 156, 292, 525, 598, 616
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PpuMI	RGGWCCY	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	692
Psp6I	CCWGG	3 cut(s)	422, 469, 889
PspGI	CCWGG	3 cut(s)	422, 469, 889
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	2 cut(s)	692, 999
PspPPI	RGGWCCY	1 cut(s)	692
PstI	CTGCAG	2 cut(s)	91, 601
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	640, 748
RsaI	GTAC	3 cut(s)	350, 815, 822
RsaNI	GTAC	3 cut(s)	349, 814, 821
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	603, 842
SatI	GCNGC	6 cut(s)	90, 155, 291, 524, 597, 615
Sau3AI	GATC	5 cut(s)	640, 748, 865, 870, 925
Sau96I	GGNCC	2 cut(s)	692, 999
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	4 cut(s)	424, 471, 891, 913
SfaNI	GCATC	4 cut(s)	52, 430, 505, 693
SfcI	CTRYAG	2 cut(s)	87, 597
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	669
SpeI	ACTAGT	1 cut(s)	191
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	3 cut(s)	192, 321, 716
StyD4I	CCNGG	4 cut(s)	422, 469, 889, 911
StyI	CCWWGG	1 cut(s)	1009
TaaI	ACNGT	2 cut(s)	7, 960
TaqI	TCGA	1 cut(s)	58
TaqII	GACCGA	1 cut(s)	893
TatI	WGTACW	1 cut(s)	820
TfiI	GAWTC	5 cut(s)	221, 296, 374, 466, 916
Tru1I	TTAA	2 cut(s)	603, 842
Tru9I	TTAA	2 cut(s)	603, 842
TseI	GCWGC	6 cut(s)	89, 154, 290, 523, 596, 614
TspDTI	ATGAA	4 cut(s)	29, 216, 342, 518
TspGWI	ACGGA	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	2 cut(s)	107, 582
XspI	CTAG	3 cut(s)	192, 321, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.