Rh5BG227300

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014127
Physical Location & Seq
Reverse (-)
26690346 .. 26694463
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG227300.1

Sequence Viewer

Length: 1122 bp
ATGGATCGGGTTATGGGCGAAAATCTGAATATGAGGCACTGGAATCAGAGTATGGATCTGAATCTGGTCGAGAAACCCGAGTACGAAGCGCCAGTCAGGTCGGGCTATGGCCGGAAGCCAAGTTACTATGAGGATGAGAGTGGCGGATACGAGACTCCCTCTGCCGCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCGCTGCCAAAGACATGTCTCTGATATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTAGTGTTGATGAAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGCGAAGACGTAAATACTTGCATTTCCTGCGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTAATATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCCCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAAGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGACCCAAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCGCATTTGTAGCGGGAGCCATCTCAGAAACAGACAAGTACGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGCTTCCCTATATTATAGAGCGATATTCACAATTCTTGGAAGGTGTATCGACTACAGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCCGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

373

Amino Acids

40.8

Weight (kDa)

4.41

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 63 - 367 3.8e-76 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 207 - 311 1.4e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 144, 165, 498, 866
AclWI GGATC 4 cut(s) 12, 63, 713, 821
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 2 cut(s) 354, 498
AfaI GTAC 4 cut(s) 83, 428, 893, 900
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 3 cut(s) 236, 388, 470
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 3 cut(s) 500, 547, 967
AluBI AGCT 3 cut(s) 242, 384, 1009
AluI AGCT 3 cut(s) 242, 384, 1009
Alw26I GTCTC 4 cut(s) 146, 226, 958, 989
AlwI GGATC 4 cut(s) 12, 63, 713, 821
AlwNI CAGNNNCTG 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 109, 1077
ApeKI GCWGC 5 cut(s) 207, 368, 601, 674, 692
ApoI RAATTY 1 cut(s) 660
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 3 cut(s) 91, 368, 857
AspS9I GGNCC 2 cut(s) 770, 1077
AsuC2I CCSGG 1 cut(s) 991
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 498
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BbsI GAAGAC 2 cut(s) 288, 348
BbvI GCAGC 5 cut(s) 194, 355, 588, 661, 679
BccI CCATC 3 cut(s) 881, 1060, 1064
BciT130I CCWGG 3 cut(s) 502, 549, 969
BciVI GTATCC 1 cut(s) 140
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 1 cut(s) 991
BcoDI GTCTC 4 cut(s) 146, 226, 958, 989
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 3 cut(s) 270, 399, 794
BfmI CTRYAG 2 cut(s) 675, 1059
BfoI RGCGCY 1 cut(s) 92
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 6 cut(s) 165, 208, 369, 602, 675, 693
BlsI GCNGC 6 cut(s) 166, 209, 370, 603, 676, 694
Bme1390I CCNGG 4 cut(s) 502, 549, 969, 991
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 770, 1077
BmiI GGNNCC 3 cut(s) 565, 772, 871
BmrFI CCNGG 4 cut(s) 502, 549, 969, 991
BmsI GCATC 3 cut(s) 508, 583, 771
BpiI GAAGAC 2 cut(s) 288, 348
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpuMI CCSGG 1 cut(s) 991
BsaBI GATNNNNATC 2 cut(s) 60, 717
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 2 cut(s) 968, 1087
BsaWI WCCGGW 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 3 cut(s) 44, 92, 437
Bse8I GATNNNNATC 2 cut(s) 60, 717
BseBI CCWGG 3 cut(s) 502, 549, 969
BseDI CCNNGG 2 cut(s) 968, 1087
BseGI GGATG 4 cut(s) 139, 460, 574, 1075
BseJI GATNNNNATC 2 cut(s) 60, 717
BseMII CTCAG 2 cut(s) 461, 891
BseNI ACTGG 3 cut(s) 44, 92, 437
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 5 cut(s) 194, 355, 588, 661, 679
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 2 cut(s) 111, 1079
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 4 cut(s) 112, 567, 990, 1113
BsmAI GTCTC 4 cut(s) 146, 226, 958, 989
BsmBI CGTCTC 1 cut(s) 958
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 2 cut(s) 111, 1079
Bso31I GGTCTC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
Bsp19I CCATGG 1 cut(s) 1087
BspACI CCGC 4 cut(s) 144, 165, 498, 866
BspANI GGCC 2 cut(s) 111, 1079
BspCNI CTCAG 2 cut(s) 460, 890
BspLI GGNNCC 3 cut(s) 565, 772, 871
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 4 cut(s) 12, 63, 713, 821
BspTNI GGTCTC 1 cut(s) 989
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 3 cut(s) 44, 92, 437
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 2 cut(s) 968, 1087
BssMI GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
BssT1I CCWWGG 1 cut(s) 1087
Bst2UI CCWGG 3 cut(s) 502, 549, 969
BstAPI GCANNNNNTGC 2 cut(s) 363, 674
BstC8I GCNNGC 2 cut(s) 498, 1114
BstDEI CTNAG 2 cut(s) 447, 877
BstDSI CCRYGG 1 cut(s) 1087
BstF5I GGATG 4 cut(s) 139, 460, 574, 1075
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 3 cut(s) 91, 368, 857
BstKTI GATC 7 cut(s) 7, 58, 721, 829, 946, 951, 1006
BstMAI GTCTC 4 cut(s) 146, 226, 958, 989
BstMBI GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 363, 674, 863
BstNI CCWGG 3 cut(s) 502, 549, 969
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 4 cut(s) 500, 547, 967, 989
BstSFI CTRYAG 2 cut(s) 675, 1059
BstSLI GKGCMC 1 cut(s) 498
BstV1I GCAGC 5 cut(s) 194, 355, 588, 661, 679
BstV2I GAAGAC 2 cut(s) 288, 348
BstX2I RGATCY 3 cut(s) 55, 718, 826
BstYI RGATCY 3 cut(s) 55, 718, 826
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 111, 1079
BtgI CCRYGG 1 cut(s) 1087
BtsCI GGATG 4 cut(s) 139, 460, 574, 1075
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 498, 1114
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 3 cut(s) 91, 368, 857
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 2 cut(s) 770, 1077
Csp6I GTAC 4 cut(s) 82, 427, 892, 899
CviAII CATG 4 cut(s) 218, 608, 831, 1088
CviQI GTAC 4 cut(s) 82, 427, 892, 899
DdeI CTNAG 2 cut(s) 447, 877
DpnI GATC 7 cut(s) 6, 57, 720, 828, 945, 950, 1005
DpnII GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
DraI TTTAAA 1 cut(s) 921
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 1087
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 354, 498
Eco88I CYCGRG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 3 cut(s) 500, 547, 967
EcoT14I CCWWGG 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 1087
Esp3I CGTCTC 1 cut(s) 958
FaeI CATG 4 cut(s) 221, 611, 834, 1091
FatI CATG 4 cut(s) 217, 607, 830, 1087
FauI CCCGC 2 cut(s) 505, 859
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 6 cut(s) 165, 208, 369, 602, 675, 693
FokI GGATG 4 cut(s) 146, 447, 561, 1082
Fsp4HI GCNGC 6 cut(s) 165, 208, 369, 602, 675, 693
FspBI CTAG 3 cut(s) 270, 399, 794
GlaI GCGC 3 cut(s) 90, 367, 856
GluI GCNGC 6 cut(s) 165, 208, 369, 602, 675, 693
GsaI CCCAGC 1 cut(s) 172
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 111, 1079
HapII CCGG 4 cut(s) 112, 567, 990, 1113
HhaI GCGC 3 cut(s) 91, 368, 857
Hin1II CATG 4 cut(s) 221, 611, 834, 1091
Hin6I GCGC 3 cut(s) 89, 366, 855
HinP1I GCGC 3 cut(s) 89, 366, 855
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 9 cut(s) 43, 61, 154, 299, 374, 452, 483, 544, 994
HpaII CCGG 4 cut(s) 112, 567, 990, 1113
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 6 cut(s) 70, 236, 332, 449, 487, 657
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 329, 473, 1040
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 9 cut(s) 260, 315, 357, 668, 677, 740, 784, 908, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 674, 863
HpyF3I CTNAG 2 cut(s) 447, 877
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 4 cut(s) 221, 611, 834, 1091
HspAI GCGC 3 cut(s) 89, 366, 855
KroI GCCGGC 1 cut(s) 1112
KroNI GCCGGC 1 cut(s) 1114
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
LmnI GCTCC 2 cut(s) 852, 869
Lsp1109I GCAGC 5 cut(s) 194, 355, 588, 661, 679
LweI GCATC 3 cut(s) 508, 583, 771
MaeI CTAG 3 cut(s) 270, 399, 794
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 122
MalI GATC 7 cut(s) 6, 57, 720, 828, 945, 950, 1005
MboI GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
MboII GAAGA 3 cut(s) 293, 353, 857
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 3 cut(s) 55, 718, 826
MhlI GDGCHC 1 cut(s) 498
MlyI GAGTC 2 cut(s) 148, 477
MmeI TCCRAC 2 cut(s) 327, 685
MnlI CCTC 4 cut(s) 27, 124, 169, 289
MroNI GCCGGC 1 cut(s) 1112
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 3 cut(s) 411, 681, 920
MslI CAYNNNNRTG 1 cut(s) 747
MspI CCGG 4 cut(s) 112, 567, 990, 1113
MspR9I CCNGG 4 cut(s) 502, 549, 969, 991
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 3 cut(s) 502, 549, 969
MwoI GCNNNNNNNGC 3 cut(s) 363, 674, 863
NaeI GCCGGC 1 cut(s) 1114
NciI CCSGG 1 cut(s) 991
NcoI CCATGG 1 cut(s) 1087
NdeII GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
NgoMIV GCCGGC 1 cut(s) 1112
NlaIII CATG 4 cut(s) 221, 611, 834, 1091
NlaIV GGNNCC 3 cut(s) 565, 772, 871
NspI RCATGY 1 cut(s) 221
PciI ACATGT 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 754
PdiI GCCGGC 1 cut(s) 1114
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 7 cut(s) 43, 61, 299, 374, 452, 544, 994
PfoI TCCNGGA 2 cut(s) 547, 989
PkrI GCNGC 6 cut(s) 166, 209, 370, 603, 676, 694
PleI GAGTC 2 cut(s) 148, 477
PpsI GAGTC 2 cut(s) 148, 477
PpuMI RGGWCCY 1 cut(s) 770
PscI ACATGT 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 500, 547, 967
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 3 cut(s) 500, 547, 967
PspN4I GGNNCC 3 cut(s) 565, 772, 871
PspPI GGNCC 2 cut(s) 770, 1077
PspPPI RGGWCCY 1 cut(s) 770
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 3 cut(s) 55, 718, 826
RsaI GTAC 4 cut(s) 83, 428, 893, 900
RsaNI GTAC 4 cut(s) 82, 427, 892, 899
RseI CAYNNNNRTG 1 cut(s) 747
SaqAI TTAA 3 cut(s) 411, 681, 920
SatI GCNGC 6 cut(s) 165, 208, 369, 602, 675, 693
Sau3AI GATC 7 cut(s) 4, 55, 718, 826, 943, 948, 1003
Sau96I GGNCC 2 cut(s) 770, 1077
SchI GAGTC 2 cut(s) 148, 477
ScrFI CCNGG 4 cut(s) 502, 549, 969, 991
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 3 cut(s) 508, 583, 771
SfcI CTRYAG 2 cut(s) 675, 1059
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 4 cut(s) 144, 165, 498, 866
SspMI CTAG 3 cut(s) 270, 399, 794
StyD4I CCNGG 4 cut(s) 500, 547, 967, 989
StyI CCWWGG 1 cut(s) 1087
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 69, 1055
TaqII GACCGA 1 cut(s) 971
TatI WGTACW 1 cut(s) 898
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 7 cut(s) 43, 61, 299, 374, 452, 544, 994
Tru1I TTAA 3 cut(s) 411, 681, 920
Tru9I TTAA 3 cut(s) 411, 681, 920
TscAI CASTG 1 cut(s) 44
TseI GCWGC 5 cut(s) 207, 368, 601, 674, 692
TspDTI ATGAA 4 cut(s) 294, 420, 449, 596
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 1 cut(s) 660
XceI RCATGY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 270, 399, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.