Rh5DG232000

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014127
Physical Location & Seq
Reverse (-)
26464301 .. 26466924
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG232000.1

Sequence Viewer

Length: 894 bp
ATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTAGTGTTGATGAAGACGATGACTATGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGCGAAGACGTAAATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTAATATAGGTGAGCAGTACGACTGGATAAAGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCGCCTGATGCCCAAGCAACAAATATAATTCTGAATCCTGGATTAGCATTTGGAACCGGAGAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAAGGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTACTCTGAACAACATAGGTCCCAAACAGATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTTGGACAGATCCATGTGGAAATGTGGAAGAACGGAGCGCATTTGTAGCGGGAGCCATCTCAGAAACAGACAAGTACGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGCTTCCCTATATTATAGAGCGATATTCACAATTCTTGGAAGGTGTATCGACTACAGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCCGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

297

Amino Acids

32.03

Weight (kDa)

4.24

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 21 - 291 1.4e-73 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 131 - 236 8.5e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 270, 284, 638
AclWI GGATC 2 cut(s) 485, 593
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 2 cut(s) 126, 270
AfaI GTAC 3 cut(s) 200, 665, 672
AgsI TTSAA 3 cut(s) 8, 160, 242
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 3 cut(s) 272, 319, 739
AluBI AGCT 3 cut(s) 14, 156, 781
AluI AGCT 3 cut(s) 14, 156, 781
Alw26I GTCTC 2 cut(s) 730, 761
AlwI GGATC 2 cut(s) 485, 593
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 4 cut(s) 140, 373, 446, 464
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 542, 849
AsuC2I CCSGG 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 60, 120
BbvI GCAGC 4 cut(s) 127, 360, 433, 451
BccI CCATC 3 cut(s) 653, 832, 836
BciT130I CCWGG 3 cut(s) 274, 321, 741
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 730, 761
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 3 cut(s) 42, 171, 566
BfmI CTRYAG 2 cut(s) 447, 831
BisI GCNGC 4 cut(s) 141, 374, 447, 465
BlsI GCNGC 4 cut(s) 142, 375, 448, 466
Bme1390I CCNGG 4 cut(s) 274, 321, 741, 763
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 542, 849
BmiI GGNNCC 3 cut(s) 337, 544, 643
BmrFI CCNGG 4 cut(s) 274, 321, 741, 763
BmsI GCATC 3 cut(s) 280, 355, 543
BpiI GAAGAC 2 cut(s) 60, 120
BpuMI CCSGG 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 740, 859
BsaWI WCCGGW 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 3 cut(s) 274, 321, 741
BseDI CCNNGG 2 cut(s) 740, 859
BseGI GGATG 3 cut(s) 232, 346, 847
BseJI GATNNNNATC 1 cut(s) 489
BseMII CTCAG 2 cut(s) 233, 663
BseNI ACTGG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 4 cut(s) 127, 360, 433, 451
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 851
BsiSI CCGG 3 cut(s) 339, 762, 885
BslFI GGGAC 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 730, 761
BsmBI CGTCTC 1 cut(s) 730
BsmFI GGGAC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 1 cut(s) 851
Bso31I GGTCTC 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 5 cut(s) 490, 598, 715, 720, 775
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 3 cut(s) 270, 284, 638
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 2 cut(s) 232, 662
BspLI GGNNCC 3 cut(s) 337, 544, 643
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 485, 593
BspTNI GGTCTC 1 cut(s) 761
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 2 cut(s) 740, 859
BssMI GATC 5 cut(s) 490, 598, 715, 720, 775
BssT1I CCWWGG 1 cut(s) 859
Bst2UI CCWGG 3 cut(s) 274, 321, 741
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 270, 886
BstDEI CTNAG 2 cut(s) 219, 649
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 3 cut(s) 232, 346, 847
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 5 cut(s) 493, 601, 718, 723, 778
BstMAI GTCTC 2 cut(s) 730, 761
BstMBI GATC 5 cut(s) 490, 598, 715, 720, 775
BstMWI GCNNNNNNNGC 2 cut(s) 446, 635
BstNI CCWGG 3 cut(s) 274, 321, 741
BstSCI CCNGG 4 cut(s) 272, 319, 739, 761
BstSFI CTRYAG 2 cut(s) 447, 831
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 4 cut(s) 127, 360, 433, 451
BstV2I GAAGAC 2 cut(s) 60, 120
BstX2I RGATCY 2 cut(s) 490, 598
BstYI RGATCY 2 cut(s) 490, 598
BsuRI GGCC 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 859
BtsCI GGATG 3 cut(s) 232, 346, 847
Cac8I GCNNGC 2 cut(s) 270, 886
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 2 cut(s) 542, 849
Csp6I GTAC 3 cut(s) 199, 664, 671
CviAII CATG 3 cut(s) 380, 603, 860
CviJI RGCY 7 cut(s) 14, 156, 384, 644, 739, 781, 851
CviKI_1 RGCY 7 cut(s) 14, 156, 384, 644, 739, 781, 851
CviQI GTAC 3 cut(s) 199, 664, 671
DdeI CTNAG 2 cut(s) 219, 649
DpnI GATC 5 cut(s) 492, 600, 717, 722, 777
DpnII GATC 5 cut(s) 490, 598, 715, 720, 775
DraI TTTAAA 1 cut(s) 693
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 761
Eco47I GGWCC 1 cut(s) 542
Eco57I CTGAAG 2 cut(s) 126, 270
EcoO109I RGGNCCY 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 432
EcoRII CCWGG 3 cut(s) 272, 319, 739
EcoT14I CCWWGG 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 730
FaeI CATG 3 cut(s) 383, 606, 863
FaqI GGGAC 1 cut(s) 528
FatI CATG 3 cut(s) 379, 602, 859
FauI CCCGC 2 cut(s) 277, 631
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 141, 374, 447, 465
FokI GGATG 3 cut(s) 219, 333, 854
Fsp4HI GCNGC 4 cut(s) 141, 374, 447, 465
FspBI CTAG 3 cut(s) 42, 171, 566
GlaI GCGC 1 cut(s) 628
GluI GCNGC 4 cut(s) 141, 374, 447, 465
HaeIII GGCC 1 cut(s) 851
HapII CCGG 3 cut(s) 339, 762, 885
HhaI GCGC 1 cut(s) 629
Hin1II CATG 3 cut(s) 383, 606, 863
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 6 cut(s) 71, 146, 224, 255, 316, 766
HpaII CCGG 3 cut(s) 339, 762, 885
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 8 cut(s) 76, 315, 479, 531, 573, 652, 720, 775
Hpy188III TCNNGA 5 cut(s) 8, 104, 221, 259, 429
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 101, 245, 812
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 9 cut(s) 32, 87, 129, 440, 449, 512, 556, 680, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 635
HpyF3I CTNAG 2 cut(s) 219, 649
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 383, 606, 863
HspAI GCGC 1 cut(s) 627
KroI GCCGGC 1 cut(s) 884
KroNI GCCGGC 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 5 cut(s) 490, 598, 715, 720, 775
LmnI GCTCC 2 cut(s) 624, 641
Lsp1109I GCAGC 4 cut(s) 127, 360, 433, 451
LweI GCATC 3 cut(s) 280, 355, 543
MaeI CTAG 3 cut(s) 42, 171, 566
MaeII ACGT 1 cut(s) 117
MalI GATC 5 cut(s) 492, 600, 717, 722, 777
MboI GATC 5 cut(s) 490, 598, 715, 720, 775
MboII GAAGA 3 cut(s) 65, 125, 629
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 490, 598
MhlI GDGCHC 1 cut(s) 270
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 99, 457
MnlI CCTC 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 183, 453, 692
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 3 cut(s) 339, 762, 885
MspR9I CCNGG 4 cut(s) 274, 321, 741, 763
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 3 cut(s) 274, 321, 741
MwoI GCNNNNNNNGC 2 cut(s) 446, 635
NaeI GCCGGC 1 cut(s) 886
NciI CCSGG 1 cut(s) 763
NcoI CCATGG 1 cut(s) 859
NdeII GATC 5 cut(s) 490, 598, 715, 720, 775
NgoMIV GCCGGC 1 cut(s) 884
NlaIII CATG 3 cut(s) 383, 606, 863
NlaIV GGNNCC 3 cut(s) 337, 544, 643
PctI GAATGC 1 cut(s) 526
PdiI GCCGGC 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 5 cut(s) 71, 146, 224, 316, 766
PfoI TCCNGGA 2 cut(s) 319, 761
PkrI GCNGC 4 cut(s) 142, 375, 448, 466
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 542
Psp6I CCWGG 3 cut(s) 272, 319, 739
PspGI CCWGG 3 cut(s) 272, 319, 739
PspN4I GGNNCC 3 cut(s) 337, 544, 643
PspPI GGNCC 2 cut(s) 542, 849
PspPPI RGGWCCY 1 cut(s) 542
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 490, 598
RsaI GTAC 3 cut(s) 200, 665, 672
RsaNI GTAC 3 cut(s) 199, 664, 671
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 3 cut(s) 183, 453, 692
SatI GCNGC 4 cut(s) 141, 374, 447, 465
Sau3AI GATC 5 cut(s) 490, 598, 715, 720, 775
Sau96I GGNCC 2 cut(s) 542, 849
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 4 cut(s) 274, 321, 741, 763
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 3 cut(s) 280, 355, 543
SfcI CTRYAG 2 cut(s) 447, 831
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 519
SpeI ACTAGT 1 cut(s) 41
SsiI CCGC 3 cut(s) 270, 284, 638
SspMI CTAG 3 cut(s) 42, 171, 566
StyD4I CCNGG 4 cut(s) 272, 319, 739, 761
StyI CCWWGG 1 cut(s) 859
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 827
TaqII GACCGA 1 cut(s) 743
TatI WGTACW 1 cut(s) 670
TfiI GAWTC 5 cut(s) 71, 146, 224, 316, 766
Tru1I TTAA 3 cut(s) 183, 453, 692
Tru9I TTAA 3 cut(s) 183, 453, 692
TseI GCWGC 4 cut(s) 140, 373, 446, 464
TspDTI ATGAA 4 cut(s) 66, 192, 221, 368
TspGWI ACGGA 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 3 cut(s) 42, 171, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.